Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1701.8 855 100.0
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1335.5 855 78.8
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1324.7 839 79.4
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1301.6 850 76.5
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1301.2 847 76.4
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1298.1 837 78.3
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1295.0 853 75.4
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1293.5 837 77.2
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1277.3 838 76.7
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1273.1 840 76.5
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1271.1 840 76.5
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1269.6 840 76.2
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1265.8 841 75.7
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1262.7 849 73.7
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1262.3 841 76.0
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1258.4 850 73.4
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1258.0 868 74.1
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1246.9 853 74.6
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1245.7 837 74.0
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1245.7 858 73.7
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1239.2 856 73.4
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1234.2 856 73.4
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1233.8 852 73.4
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1230.7 852 73.2
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1229.2 833 73.9
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1228.4 840 74.2
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1226.5 853 73.2
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1224.9 854 73.0
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1224.2 851 72.9
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1223.8 818 75.7
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1222.6 851 72.4
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1220.3 853 72.6
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1215.7 840 73.8
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 0.0e+00 1214.1 848 72.9
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 0.0e+00 1213.4 834 73.9
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 0.0e+00 1212.2 847 73.1
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 0.0e+00 1211.8 837 73.2
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1210.3 854 71.8
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 0.0e+00 1209.9 936 67.5
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1208.4 849 71.5
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 0.0e+00 1208.0 836 72.2
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 0.0e+00 1206.4 851 72.2
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1204.1 851 71.8
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 0.0e+00 1203.0 852 71.1
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1202.2 847 71.5
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 0.0e+00 1201.8 853 72.0
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 0.0e+00 1199.1 766 77.7
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 0.0e+00 1197.2 839 70.8
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 0.0e+00 1195.3 838 71.6
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 0.0e+00 1192.9 850 71.5
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 0.0e+00 1192.2 772 77.3
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1189.1 832 72.4
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1186.8 883 69.9
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1186.0 840 72.7
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1185.6 851 71.8
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 0.0e+00 1180.6 836 70.7
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 0.0e+00 1179.9 835 70.8
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 0.0e+00 1179.9 827 72.2
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1179.9 841 69.7
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 0.0e+00 1177.9 836 70.6
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1176.8 866 69.4
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 0.0e+00 1174.1 831 71.0
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 0.0e+00 1171.4 855 70.2
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1171.0 837 70.8
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1168.3 849 69.7
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1159.4 940 65.0
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1157.9 848 68.9
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1157.9 839 70.2
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1155.2 848 68.9
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 0.0e+00 1153.3 734 78.9
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1152.9 855 68.8
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1152.9 762 76.1
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1151.3 839 69.7
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1151.0 840 69.4
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1145.2 727 78.3
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 0.0e+00 1144.0 892 66.4
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1138.6 869 68.2
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1137.1 852 69.7
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 0.0e+00 1135.9 930 64.8
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 0.0e+00 1134.4 847 68.6
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 0.0e+00 1131.3 848 68.6
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1128.6 930 63.9
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 0.0e+00 1125.9 992 61.4
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 0.0e+00 1125.5 835 69.2
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1120.5 837 68.1
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 0.0e+00 1113.6 853 67.1
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1113.6 853 67.1
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 0.0e+00 1110.1 706 78.5
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1109.4 837 67.3
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1102.8 836 66.7
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 0.0e+00 1095.5 838 66.9
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1091.6 839 66.4
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1090.1 838 66.9
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1089.3 838 66.7
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1087.4 827 67.6
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1087.0 849 64.9
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 0.0e+00 1081.2 840 66.1
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1081.2 840 66.1
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 0.0e+00 1081.2 830 67.0
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 0.0e+00 1075.1 869 64.8
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 9.8e-310 1066.6 825 67.4
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 4.1e-308 1061.2 741 72.3
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 2.7e-307 1058.5 836 64.7
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 6.9e-295 1017.3 738 69.5
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 1.0e-290 1003.4 839 61.9
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 1.1e-287 993.4 835 62.6
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 4.0e-287 991.5 720 70.6
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 5.3e-287 991.1 720 69.7
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 5.3e-287 991.1 834 62.7
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 9.3e-284 980.3 846 60.6
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 1.2e-270 936.8 741 65.3
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 7.6e-270 934.1 675 70.5
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 1.7e-269 932.9 792 61.7
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 2.5e-257 892.5 672 67.9
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 3.4e-254 882.1 534 81.8
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 1.7e-240 836.6 856 53.2
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 9.7e-233 810.8 849 54.5
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 2.7e-227 792.7 777 58.6
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 3.1e-223 779.2 538 74.2
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 1.7e-213 746.9 865 48.8
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 3.9e-213 745.7 878 48.3
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 1.1e-212 744.2 872 48.9
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 4.4e-201 705.7 456 76.8
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 2.4e-178 630.2 758 49.1
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 5.4e-175 619.0 451 70.5
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 9.6e-172 608.2 537 60.1
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 1.5e-169 600.9 456 68.0
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 5.4e-167 592.4 472 65.9
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 9.3e-167 591.7 392 76.3
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.9e-159 567.4 472 63.1
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 1.5e-156 557.8 493 61.9
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 3.3e-156 556.6 368 73.4
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 6.9e-154 548.9 815 42.6
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 2.2e-144 517.3 738 44.0
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 1.8e-133 481.1 460 55.4
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 4.8e-123 446.4 389 60.2
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 1.4e-122 444.9 298 72.5
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 3.2e-119 433.7 367 64.9
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 6.8e-117 426.0 352 62.5
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 3.1e-114 417.2 311 68.5
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 6.5e-112 409.5 316 65.8
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 1.4e-98 365.2 319 58.0
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 2.9e-91 340.9 291 61.2
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 8.6e-88 329.3 248 67.7
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 4.0e-85 320.5 204 75.5
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 3.2e-66 257.7 173 71.7
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 1.3e-64 252.3 227 59.0
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 8.1e-62 243.0 185 64.3
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 1.3e-59 235.7 158 77.8
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 2.6e-52 211.5 277 49.8
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 5.5e-50 203.8 131 75.6
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 1.5e-44 185.7 140 67.1
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 1.7e-43 182.2 492 31.3
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 5.5e-34 150.6 109 69.7
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 3.3e-31 141.4 128 63.3
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 1.3e-30 139.4 124 62.9
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 1.1e-29 136.3 72 93.1
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 1.1e-26 126.3 112 60.7
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 5.3e-21 107.5 77 72.7
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 2.0e-20 105.5 79 67.1
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 1.0e-16 93.2 60 73.3
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.1e-15 89.7 68 60.3
RcHm_v2.0_Chr2g0132831 Rosa chinensis HOM05D004192 ORTHO05D004917 2.7e-09 68.6 55 61.8
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 2.3e-08 65.5 92 41.3
TAR633G0581 Trochodendron aralioides HOM05D004192 ORTHO05D004917 6.7e-08 63.9 60 53.3
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 8.8e-08 63.5 35 80.0
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 8.8e-08 63.5 35 80.0
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 8.8e-08 63.5 35 80.0
Hma1.2p1_0492F.1_g164730 Hydrangea macrophylla HOM05D011107 ORTHO05D012795 2.6e-07 62.0 53 58.5
AL6G39020 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 3.7e-06 58.2 35 74.3


User provided reference genes

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