Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J00897 Eucalyptus grandis HOM05D007330 ORTHO05D009368 2.0e-86 322.4 166 100.0
Ciclev10029423m.g Citrus clementina HOM05D007330 ORTHO05D009368 2.2e-48 196.1 123 81.3
PGR119G1592 Punica granatum HOM05D007330 ORTHO05D009368 8.4e-48 194.1 131 75.6
Manes.11G150100 Manihot esculenta HOM05D007330 ORTHO05D009368 1.9e-47 193.0 164 63.4
TAR636G1893 Trochodendron aralioides HOM05D007330 ORTHO05D009368 2.4e-47 192.6 148 68.9
CSS0040476 Camellia sinensis var. sinensis HOM05D007330 ORTHO05D009368 7.8e-46 187.6 121 76.9
Thecc.09G347600 Theobroma cacao HOM05D007330 ORTHO05D009368 2.3e-45 186.0 164 60.4
Rhsim13G0098500 Rhododendron simsii HOM05D007330 ORTHO05D009368 5.1e-45 184.9 130 74.6
Potri.009G008400 Populus trichocarpa HOM05D007330 ORTHO05D009368 2.5e-44 182.6 164 59.1
vmacro03274 Vaccinium macrocarpon HOM05D007330 ORTHO05D009368 2.5e-44 182.6 120 77.5
CiPaw.13G117900 Carya illinoinensis HOM05D007330 ORTHO05D009368 4.3e-44 181.8 114 79.8
Dinv34698 Davidia involucrata HOM05D007330 ORTHO05D009368 2.1e-43 179.5 156 62.8
Gohir.D05G106300 Gossypium hirsutum HOM05D007330 ORTHO05D009368 2.8e-43 179.1 120 73.3
Gohir.A05G106300 Gossypium hirsutum HOM05D007330 ORTHO05D009368 4.8e-43 178.3 120 72.5
Ca_19301_v3 Cicer arietinum L. HOM05D007330 ORTHO05D009368 6.2e-43 177.9 134 67.9
FvH4_3g31190 Fragaria vesca HOM05D007330 ORTHO05D009368 8.1e-43 177.6 129 67.4
FAN25G0306 Fragaria x ananassa HOM05D007330 ORTHO05D009368 1.1e-42 177.2 129 67.4
FAN11G3216 Fragaria x ananassa HOM05D007330 ORTHO05D009368 1.8e-42 176.4 127 67.7
CANSAT35G1795 Cannabis sativa HOM05D007330 ORTHO05D009368 4.0e-42 175.3 115 76.5
COL.COLO4_34706 Corchorus olitorius HOM05D007330 ORTHO05D009368 4.0e-42 175.3 130 68.5
RcHm_v2.0_Chr5g0057841 Rosa chinensis HOM05D007330 ORTHO05D009368 5.3e-42 174.9 129 68.2
BcaB05g23421 Brassica carinata HOM05D007330 ORTHO05D009368 1.2e-41 173.7 128 71.1
FAN21G2017 Fragaria x ananassa HOM05D007330 ORTHO05D009368 1.2e-41 173.7 129 65.9
Glyma.12G079000 Glycine max HOM05D007330 ORTHO05D009368 1.5e-41 173.3 133 68.4
THA.LOC104814822 Tarenaya hassleriana HOM05D007330 ORTHO05D009368 2.0e-41 172.9 111 77.5
GSVIVG01031517001 Vitis vinifera HOM05D000070 ORTHO05D001255 2.0e-41 172.9 149 61.7
Atru.chr3.3558 Acer truncatum HOM05D007330 ORTHO05D009368 2.6e-41 172.6 116 75.0
BcaC09g49699 Brassica carinata HOM05D007330 ORTHO05D009368 9.9e-41 170.6 128 70.3
A01p26570 Brassica napus HOM05D007330 ORTHO05D009368 9.9e-41 170.6 128 70.3
C01p33810 Brassica napus HOM05D007330 ORTHO05D009368 9.9e-41 170.6 128 70.3
BolC1t03342H Brassica oleracea HOM05D007330 ORTHO05D009368 9.9e-41 170.6 128 70.3
BraA01t02587Z Brassica rapa HOM05D007330 ORTHO05D009368 9.9e-41 170.6 128 70.3
Ah.01g003130 Amaranthus hybridus HOM05D007330 ORTHO05D009368 1.3e-40 170.2 131 63.4
Carub.0005s1083 Capsella rubella HOM05D007330 ORTHO05D009368 1.3e-40 170.2 145 64.1
MSTRG.18683 Avicennia marina HOM05D007330 ORTHO05D009368 1.7e-40 169.9 127 71.7
CARHR150920 Cardamine hirsuta HOM05D007330 ORTHO05D009368 1.7e-40 169.9 121 71.9
Thhalv10002688m.g Eutrema salsugineum HOM05D007330 ORTHO05D009368 1.7e-40 169.9 112 76.8
Glyma.11G195100 Glycine max HOM05D007330 ORTHO05D009368 1.7e-40 169.9 126 69.0
Sp5g16210 Schrenkiella parvula HOM05D007330 ORTHO05D009368 1.7e-40 169.9 125 71.2
Aa31LG4G14100 Aethionema arabicum HOM05D007330 ORTHO05D009368 2.9e-40 169.1 126 70.6
Nn2g13766 Nelumbo nucifera HOM05D007330 ORTHO05D009368 2.9e-40 169.1 119 71.4
QL01p015978 Quercus lobata HOM05D007330 ORTHO05D009368 2.9e-40 169.1 115 74.8
Medtr4g057845 Medicago truncatula HOM05D007330 ORTHO05D009368 3.8e-40 168.7 133 64.7
Migut.N02576 Erythranthe guttata HOM05D007330 ORTHO05D009368 4.9e-40 168.3 126 71.4
DCAR_018785 Daucus carota HOM05D007330 ORTHO05D009368 8.4e-40 167.5 113 76.1
MD11G1142300 Malus domestica HOM05D007330 ORTHO05D009368 1.4e-39 166.8 129 68.2
ClCG03G002650 Citrullus lanatus HOM05D007330 ORTHO05D009368 1.9e-39 166.4 119 68.1
MELO3C004968.2 Cucumis melo HOM05D007330 ORTHO05D009368 1.9e-39 166.4 119 68.1
AT3G45050 Arabidopsis thaliana HOM05D007330 ORTHO05D009368 4.2e-39 165.2 122 70.5
CsaV3_1G013380 Cucumis sativus L. HOM05D007330 ORTHO05D009368 4.2e-39 165.2 119 67.2
TWI31G1101 Tripterygium wilfordii HOM05D007330 ORTHO05D009368 4.2e-39 165.2 116 74.1
Cc01_g10610 Coffea canephora HOM05D007330 ORTHO05D009368 5.4e-39 164.9 113 76.1
Lalb_Chr19g0137021 Lupinus albus HOM05D007330 ORTHO05D009368 1.2e-38 163.7 115 73.9
Nitab4.5_0000567g0040 Nicotiana tabacum HOM05D007330 ORTHO05D009368 1.6e-38 163.3 114 70.2
HanXRQChr11g0346411 Helianthus annuus HOM05D007330 ORTHO05D009368 2.1e-38 162.9 122 68.0
Hma1.2p1_0569F.1_g180250 Hydrangea macrophylla HOM05D007330 ORTHO05D009368 2.1e-38 162.9 116 70.7
Lj3g0015691 Lotus japonicus HOM05D007330 ORTHO05D009368 2.1e-38 162.9 121 67.8
Sed0025524 Sechium edule HOM05D007330 ORTHO05D009368 2.1e-38 162.9 120 67.5
MBI18_g25263_MAGBIO Magnolia biondii HOM05D007330 ORTHO05D009368 2.7e-38 162.5 222 46.8
Sc15g0001620 Simmondsia chinensis HOM05D007330 ORTHO05D009368 2.7e-38 162.5 116 70.7
ECA248G2053 Erigeron canadensis HOM05D007330 ORTHO05D009368 4.6e-38 161.8 117 70.9
PSO339G1528 Papaver somniferum HOM05D007330 ORTHO05D009368 4.6e-38 161.8 134 64.2
Actinidia07167 Actinidia chinensis HOM05D007330 ORTHO05D009368 6.0e-38 161.4 114 71.1
Psat4g155560 Pisum sativum HOM05D007330 ORTHO05D009368 7.9e-38 161.0 124 66.1
Sopen04g002470 Solanum pennellii HOM05D007330 ORTHO05D009368 1.0e-37 160.6 119 66.4
Lsat_1_v5_gn_1_63180 Lactuca sativa HOM05D007330 ORTHO05D009368 3.9e-37 158.7 117 70.1
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 5.1e-37 158.3 114 68.4
Solyc04g007410.4 Solanum lycopersicum HOM05D007330 ORTHO05D009368 6.7e-37 157.9 119 65.5
VMungo1127G0312 Vigna mungo HOM05D007330 ORTHO05D009368 1.1e-36 157.1 136 61.0
SGA_v2.0_scaffold116G32214 Striga asiatica HOM05D007330 ORTHO05D009368 3.3e-36 155.6 101 75.2
Peaxi162Scf00064g00193 Petunia axillaris HOM05D007330 ORTHO05D009368 4.8e-35 151.8 115 67.8
CAN.G1577.6 Capsicum annuum HOM05D007330 ORTHO05D009368 8.1e-35 151.0 113 65.5
arahy.Tifrunner.gnm1.ann1.PP0PHB Arachis hypogaea HOM05D007330 ORTHO05D009368 1.5e-33 146.7 130 61.5
arahy.Tifrunner.gnm1.ann1.V5GM9G Arachis hypogaea HOM05D007330 ORTHO05D009368 2.6e-33 146.0 122 64.8
AL5G23540 Arabidopsis lyrata HOM05D007330 ORTHO05D009368 5.8e-33 144.8 122 64.8
Prupe.6G107600 Prunus persica HOM05D007330 ORTHO05D009368 1.7e-32 143.3 103 71.8
Phvul.011G083600 Phaseolus vulgaris HOM05D007330 ORTHO05D009368 4.9e-32 141.7 97 71.1
AUR62022766 Chenopodium quinoa HOM05D007330 ORTHO05D009368 2.5e-31 139.4 139 53.2
PSO801G0259 Papaver somniferum HOM05D007330 ORTHO05D009368 2.5e-31 139.4 119 63.0
Lj1C194T4 Lonicera japonica HOM05D007330 ORTHO05D009368 1.2e-30 137.1 116 62.9
Peaxi162Scf00597g00033 Petunia axillaris HOM05D007330 ORTHO05D009368 6.0e-30 134.8 113 64.6
Lj1A195G28 Lonicera japonica HOM05D007330 ORTHO05D009368 1.8e-29 133.3 116 63.8
Gorai.009G110400 Gossypium raimondii HOM05D007330 ORTHO05D009368 5.7e-28 128.3 94 68.1
Cpa.g.sc65.31 Carica papaya HOM05D007330 ORTHO05D009368 6.2e-27 124.8 94 68.1
HPP92_007165 Vanilla planifolia HOM05D007330 ORTHO05D009368 6.2e-27 124.8 110 60.0
Sabra09G0004900 Salix brachista HOM05D007330 ORTHO05D009368 1.4e-26 123.6 139 49.6
Aqoxy2G01788 Aquilegia oxysepala HOM05D007330 ORTHO05D009368 3.4e-25 119.0 92 69.6
Nitab4.5_0003325g0010 Nicotiana tabacum HOM05D007330 ORTHO05D009368 4.5e-25 118.6 86 70.9
Peaxi162Scf00958g00023 Petunia axillaris HOM05D007330 ORTHO05D009368 5.8e-25 118.2 92 71.7
SEGI_17989 Sequoiadendron giganteum HOM05D007330 ORTHO05D009368 1.3e-24 117.1 111 51.4
PGSC0003DMG400005973 Solanum tuberosum HOM05D007330 ORTHO05D009368 5.0e-24 115.2 91 64.8
Pp3c18_13360 Physcomitrium patens HOM05D007330 ORTHO05D009368 4.2e-23 112.1 120 50.8
Hund08155 Selenicereus undatus HOM05D007330 ORTHO05D009368 7.1e-23 111.3 103 56.3
AagrBONN_evm.TU.Sc2ySwM_228.4164 Anthoceros agrestis HOM05D007330 ORTHO05D009368 1.8e-21 106.7 115 48.7
Os06g0731300 Oryza sativa ssp. japonica HOM05D007330 ORTHO05D009368 1.9e-20 103.2 71 62.0
CBR_g54316 Chara braunii HOM05D007330 ORTHO05D009368 3.1e-18 95.9 115 41.7
MD03G1125100 Malus domestica HOM05D007330 ORTHO05D009368 3.1e-18 95.9 130 45.4
Haze_23760 Corylus avellana HOM05D007330 ORTHO05D009368 1.2e-17 94.0 190 36.3
SMO275G0064 Selaginella moellendorffii HOM05D007330 ORTHO05D009368 2.5e-15 86.3 118 44.9
Mapoly0184s0021 Marchantia polymorpha HOM05D007330 ORTHO05D009368 4.2e-15 85.5 121 41.3
SMO367G0878 Selaginella moellendorffii HOM05D007330 ORTHO05D009368 4.2e-15 85.5 118 44.9
AUR62029217 Chenopodium quinoa HOM05D007330 ORTHO05D009368 7.9e-14 81.3 103 46.6
arahy.Tifrunner.gnm1.ann1.N36MJA Arachis hypogaea HOM05D007330 ORTHO05D009368 8.2e-11 71.2 72 54.2
EL10Ac9g22568 Beta vulgaris HOM05D007330 ORTHO05D009368 6.9e-10 68.2 131 35.9
Oeu013536.1 Olea europaea HOM05D000070 ORTHO05D001255 3.4e-09 65.9 130 36.2
Actinidia24129 Actinidia chinensis HOM05D000070 ORTHO05D001255 4.2e-07 58.9 70 50.0


User provided reference genes

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