Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 0.0e+00 1165.2 568 100.0
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 0.0e+00 1088.2 568 91.5
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 0.0e+00 1083.6 568 91.2
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 0.0e+00 1075.8 568 90.5
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 1.2e-311 1072.4 568 90.7
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 1.6e-311 1072.0 568 90.3
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 7.8e-311 1069.7 568 89.8
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 3.0e-310 1067.8 564 89.9
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 2.8e-308 1061.2 568 88.7
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 3.6e-308 1060.8 568 88.7
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 4.7e-308 1060.4 568 89.1
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 4.7e-308 1060.4 571 90.0
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 8.0e-308 1059.7 563 90.6
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 1.0e-307 1059.3 563 89.9
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 1.4e-307 1058.9 556 91.4
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 8.8e-307 1056.2 561 90.0
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 8.8e-307 1056.2 563 90.2
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 1.5e-306 1055.4 567 88.5
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 9.8e-306 1052.7 563 89.7
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 4.9e-305 1050.4 565 88.1
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 1.1e-304 1049.3 568 88.6
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 1.4e-304 1048.9 568 88.2
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 3.1e-304 1047.7 561 89.5
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 7.0e-304 1046.6 568 88.6
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 1.2e-303 1045.8 568 87.5
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 4.5e-303 1043.9 568 88.2
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 4.5e-303 1043.9 568 87.9
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 7.8e-303 1043.1 568 87.7
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.7e-302 1042.0 563 88.5
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 2.9e-302 1041.2 556 89.2
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 2.9e-302 1041.2 568 87.1
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 2.9e-302 1041.2 568 88.0
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 6.6e-302 1040.0 568 87.1
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 1.1e-301 1039.3 568 86.8
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 3.3e-301 1037.7 561 88.8
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 4.3e-301 1037.3 567 87.1
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 5.6e-301 1036.9 573 87.4
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 9.5e-301 1036.2 567 86.9
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 1.2e-300 1035.8 568 87.1
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 2.1e-300 1035.0 568 86.8
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 2.8e-300 1034.6 573 87.3
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 6.1e-300 1033.5 567 86.2
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 1.4e-299 1032.3 568 86.6
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.8e-299 1031.9 568 86.8
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 5.2e-299 1030.4 568 87.9
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.6e-298 1028.1 568 85.7
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 9.8e-298 1026.2 568 85.9
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 2.2e-297 1025.0 563 87.4
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 2.9e-297 1024.6 568 85.9
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 2.9e-297 1024.6 568 85.9
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 2.9e-297 1024.6 563 87.4
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 4.9e-297 1023.8 568 85.6
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 8.3e-297 1023.1 563 87.2
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 8.3e-297 1023.1 563 86.1
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 8.3e-297 1023.1 563 86.1
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 1.4e-296 1022.3 561 86.3
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 3.2e-296 1021.1 568 85.9
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 5.4e-296 1020.4 563 87.2
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 1.3e-294 1015.8 568 86.4
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 2.3e-294 1015.0 565 84.6
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 3.0e-294 1014.6 563 86.7
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 4.3e-293 1010.7 556 85.1
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 5.6e-293 1010.4 566 85.5
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 9.5e-293 1009.6 569 84.2
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 8.0e-292 1006.5 561 85.7
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 1.8e-291 1005.4 565 83.2
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 5.2e-291 1003.8 563 86.0
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 2.0e-290 1001.9 549 86.2
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 3.4e-290 1001.1 565 85.0
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 2.2e-289 998.4 565 82.7
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 1.1e-288 996.1 571 83.5
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.4e-288 995.7 552 84.6
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 1.9e-288 995.3 557 86.4
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.9e-288 995.3 564 84.9
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 2.4e-288 995.0 559 85.5
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 9.2e-288 993.0 565 84.2
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 2.0e-287 991.9 550 85.3
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 2.7e-287 991.5 565 83.0
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 1.7e-286 988.8 564 84.6
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 8.6e-286 986.5 561 83.2
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 8.6e-286 986.5 568 82.7
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 2.1e-284 981.9 564 83.5
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 4.7e-284 980.7 564 83.3
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 4.7e-284 980.7 564 83.3
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 4.7e-284 980.7 564 83.3
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 2.3e-283 978.4 564 83.2
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 2.3e-283 978.4 570 82.8
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 3.1e-283 978.0 549 85.2
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 3.1e-283 978.0 533 86.3
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 5.2e-283 977.2 564 82.6
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.0e-282 975.3 567 82.7
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.4e-282 974.5 567 82.7
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 4.4e-282 974.2 564 82.6
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 5.8e-282 973.8 564 82.4
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 5.8e-282 973.8 564 82.4
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 5.8e-282 973.8 564 82.4
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 5.8e-282 973.8 549 84.7
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 9.9e-282 973.0 549 84.9
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 9.9e-282 973.0 564 82.3
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 3.7e-281 971.1 564 82.1
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 3.7e-281 971.1 565 81.8
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 6.4e-281 970.3 564 83.0
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 1.1e-280 969.5 564 82.1
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 2.4e-280 968.4 564 82.6
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 2.4e-280 968.4 568 81.0
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 7.1e-280 966.8 564 81.2
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 7.1e-280 966.8 568 80.5
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 9.2e-280 966.5 564 82.3
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 2.1e-279 965.3 564 82.8
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 3.5e-279 964.5 564 81.7
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 1.9e-277 958.7 564 80.7
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 9.5e-277 956.4 564 81.0
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 6.2e-276 953.7 562 82.6
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.1e-275 953.0 564 80.0
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 1.4e-275 952.6 568 79.2
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 5.2e-275 950.7 564 80.1
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 4.4e-274 947.6 564 80.1
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 9.9e-274 946.4 562 82.0
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 4.9e-273 944.1 564 81.2
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 7.1e-272 940.3 568 78.5
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 9.6e-269 929.9 563 81.0
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 3.6e-268 927.9 565 78.2
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 4.7e-268 927.5 571 77.6
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 4.4e-266 921.0 562 78.3
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 4.4e-266 921.0 571 76.5
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 3.9e-262 907.9 564 78.9
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 8.7e-262 906.7 568 75.7
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 1.5e-261 906.0 524 83.0
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.5e-261 906.0 567 75.7
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 9.6e-261 903.3 574 74.9
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 9.3e-256 886.7 564 73.6
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 6.0e-255 884.0 565 75.4
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 3.1e-251 871.7 556 78.6
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 3.4e-250 868.2 550 75.3
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 1.2e-247 859.8 569 73.8
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 2.7e-247 858.6 568 74.1
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 3.9e-246 854.7 565 72.2
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 2.7e-239 832.0 469 82.9
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 3.9e-238 828.2 564 70.9
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 2.0e-221 772.7 424 87.3
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 6.7e-214 747.7 563 67.1
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 7.0e-211 737.6 425 82.6
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 6.5e-209 731.1 567 65.8
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.2e-188 662.9 373 82.8
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 3.4e-173 612.5 543 55.1
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 6.4e-172 608.2 417 73.6
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 4.4e-165 585.5 329 81.5
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 4.1e-163 578.9 488 55.7
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 7.8e-162 574.7 523 52.4
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 1.9e-160 570.1 292 88.0
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.7e-148 530.4 418 61.0
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 4.2e-139 499.2 567 50.3
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 6.7e-137 491.9 568 50.0
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 3.9e-129 466.1 319 72.4
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 6.2e-127 458.8 468 54.9
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 7.5e-88 328.9 555 39.5
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 2.7e-85 320.5 213 73.7
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 5.7e-80 302.8 497 35.4
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 2.8e-66 257.3 197 64.5
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 3.1e-65 253.8 197 63.5
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 3.5e-61 240.4 166 67.5
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.1e-51 208.8 131 79.4
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 2.2e-47 194.5 133 73.7
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.2e-45 188.7 128 74.2
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 6.0e-45 186.4 166 62.7
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 2.3e-44 184.5 166 62.7
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 3.9e-44 183.7 166 62.7
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 3.9e-44 183.7 128 68.0
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 4.3e-43 180.3 166 62.0
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 7.1e-38 162.9 324 33.0
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 3.8e-31 140.6 87 73.6
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 5.4e-30 136.7 496 26.4
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 9.3e-30 136.0 94 69.1
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 2.5e-27 127.9 213 38.5
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 5.6e-27 126.7 76 71.1
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 7.3e-27 126.3 85 63.5
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 2.4e-22 111.3 184 40.2
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 3.0e-20 104.4 166 42.8
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 3.1e-17 94.4 103 46.6
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 1.4e-09 68.9 46 60.9
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 5.5e-06 57.0 72 50.0


User provided reference genes

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