Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J00831 Eucalyptus grandis HOM05D007162 ORTHO05D007631 5.4e-39 163.7 74 100.0
Eucgr.B03982 Eucalyptus grandis HOM05D007162 ORTHO05D007631 2.7e-14 81.6 42 85.7
Lalb_Chr15g0089091 Lupinus albus HOM05D007162 ORTHO05D007631 1.6e-11 72.4 42 76.2
Nn4g25520 Nelumbo nucifera HOM05D007162 ORTHO05D007631 1.6e-11 72.4 36 88.9
TAR362G1081 Trochodendron aralioides HOM05D007162 ORTHO05D007631 8.1e-11 70.1 36 86.1
Lalb_Chr18g0058531 Lupinus albus HOM05D007162 ORTHO05D007631 1.4e-10 69.3 35 88.6
Duzib151G0437 Durio zibethinus HOM05D007162 ORTHO05D007631 1.8e-10 68.9 42 76.2
Thecc.04G306200 Theobroma cacao HOM05D007162 ORTHO05D007631 1.8e-10 68.9 42 76.2
Ca_00957_v3 Cicer arietinum L. HOM05D007162 ORTHO05D007631 2.4e-10 68.6 42 73.8
Dinv15135 Davidia involucrata HOM05D007162 ORTHO05D007631 3.1e-10 68.2 35 85.7
Hma1.2p1_0516F.1_g170520 Hydrangea macrophylla HOM05D007162 ORTHO05D007631 3.1e-10 68.2 35 85.7
Cfa015679 Carpinus fangiana HOM05D007162 ORTHO05D007631 4.0e-10 67.8 41 75.6
Haze_00858 Corylus avellana HOM05D007162 ORTHO05D007631 4.0e-10 67.8 41 75.6
Aqoxy2G02919 Aquilegia oxysepala HOM05D007162 ORTHO05D007631 5.3e-10 67.4 36 80.6
Glyma.09G032600 Glycine max HOM05D007162 ORTHO05D007631 5.3e-10 67.4 35 85.7
Glyma.15G137700 Glycine max HOM05D007162 ORTHO05D007631 5.3e-10 67.4 35 85.7
Medtr2g033410 Medicago truncatula HOM05D007162 ORTHO05D007631 5.3e-10 67.4 48 68.8
Duzib212G0788 Durio zibethinus HOM05D007162 ORTHO05D007631 6.9e-10 67.0 35 85.7
Phvul.006G120400 Phaseolus vulgaris HOM05D007162 ORTHO05D007631 6.9e-10 67.0 35 85.7
Psat1g162520 Pisum sativum HOM05D007162 ORTHO05D007631 6.9e-10 67.0 48 68.8
VMungo0540G1379 Vigna mungo HOM05D007162 ORTHO05D007631 6.9e-10 67.0 35 85.7
EL10Ac3g05554 Beta vulgaris HOM05D007162 ORTHO05D007631 9.0e-10 66.6 52 69.2
Lj6g0014268 Lotus japonicus HOM05D007162 ORTHO05D007631 9.0e-10 66.6 35 85.7
QL06p013113 Quercus lobata HOM05D007162 ORTHO05D007631 9.0e-10 66.6 35 82.9
QL12p005934 Quercus lobata HOM05D007162 ORTHO05D007631 9.0e-10 66.6 35 82.9
COL.COLO4_34567 Corchorus olitorius HOM05D007162 ORTHO05D007631 1.2e-09 66.2 42 71.4
TPR.G33885 Trifolium pratense HOM05D007162 ORTHO05D007631 1.2e-09 66.2 41 78.0
Atru.chr4.3114 Acer truncatum HOM05D007162 ORTHO05D007631 1.5e-09 65.9 42 71.4
Migut.G00030 Erythranthe guttata HOM05D007162 ORTHO05D007631 1.5e-09 65.9 38 73.7
Manes.03G207900 Manihot esculenta HOM05D007162 ORTHO05D007631 1.5e-09 65.9 35 80.0
MSTRG.10171 Avicennia marina HOM05D007162 ORTHO05D007631 2.0e-09 65.5 41 73.2
DCAR_023374 Daucus carota HOM05D007162 ORTHO05D007631 2.0e-09 65.5 35 82.9
Hma1.2p1_0013F.1_g008260 Hydrangea macrophylla HOM05D007162 ORTHO05D007631 2.6e-09 65.1 35 80.0
Lsat_1_v5_gn_1_40801 Lactuca sativa HOM05D007162 ORTHO05D007631 2.6e-09 65.1 42 66.7
TWI09G0041 Tripterygium wilfordii HOM05D007162 ORTHO05D007631 2.6e-09 65.1 35 82.9
Aa31LG11G8430 Aethionema arabicum HOM05D007162 ORTHO05D007631 3.4e-09 64.7 35 80.0
Ciclev10005014m.g Citrus clementina HOM05D007162 ORTHO05D007631 3.4e-09 64.7 41 75.6
Lalb_Chr20g0120651 Lupinus albus HOM05D007162 ORTHO05D007631 3.4e-09 64.7 35 85.7
PGR031G2441 Punica granatum HOM05D007162 ORTHO05D007631 3.4e-09 64.7 35 82.9
Gohir.A01G035600 Gossypium hirsutum HOM05D007162 ORTHO05D007631 4.5e-09 64.3 35 77.1
Gohir.A10G174800 Gossypium hirsutum HOM05D007162 ORTHO05D007631 5.8e-09 63.9 35 80.0
Gohir.D10G181300 Gossypium hirsutum HOM05D007162 ORTHO05D007631 5.8e-09 63.9 35 80.0
Gorai.011G202800 Gossypium raimondii HOM05D007162 ORTHO05D007631 5.8e-09 63.9 35 80.0
MBI19_g03280_MAGBIO Magnolia biondii HOM05D002153 ORTHO05D002137 5.8e-09 63.9 36 77.8
unitig_0.g2579 Utricularia gibba HOM05D007162 ORTHO05D007631 5.8e-09 63.9 42 66.7
BcaC03g17742 Brassica carinata HOM05D007162 ORTHO05D007631 7.6e-09 63.5 42 61.9
C02p57550 Brassica napus HOM05D007162 ORTHO05D007631 7.6e-09 63.5 42 61.9
BolC2t11828H Brassica oleracea HOM05D007162 ORTHO05D007631 7.6e-09 63.5 42 61.9
AUR62016246 Chenopodium quinoa HOM05D007162 ORTHO05D007631 7.6e-09 63.5 35 80.0
AUR62032769 Chenopodium quinoa HOM05D007162 ORTHO05D007631 7.6e-09 63.5 35 80.0
Gohir.D01G023577 Gossypium hirsutum HOM05D007162 ORTHO05D007631 7.6e-09 63.5 35 77.1
Gorai.002G031500 Gossypium raimondii HOM05D007162 ORTHO05D007631 7.6e-09 63.5 35 77.1
MD13G1148700 Malus domestica HOM05D007162 ORTHO05D007631 7.6e-09 63.5 35 82.9
CANSAT78G1184 Cannabis sativa HOM05D007162 ORTHO05D007631 1.0e-08 63.2 35 77.1
Potri.010G149000 Populus trichocarpa HOM05D007162 ORTHO05D007631 1.0e-08 63.2 35 80.0
THA.LOC104818869 Tarenaya hassleriana HOM05D007162 ORTHO05D007631 1.0e-08 63.2 35 80.0
BraA02t08804Z Brassica rapa HOM05D007162 ORTHO05D007631 1.3e-08 62.8 35 74.3
SGA_v2.0_scaffold157G37347 Striga asiatica HOM05D007162 ORTHO05D007631 1.3e-08 62.8 41 68.3
A02p38240 Brassica napus HOM05D007162 ORTHO05D007631 1.7e-08 62.4 35 74.3
Lj3P834T54 Lonicera japonica HOM05D007162 ORTHO05D007631 1.7e-08 62.4 35 80.0
RcHm_v2.0_Chr4g0426111 Rosa chinensis HOM05D007162 ORTHO05D007631 1.7e-08 62.4 35 77.1
Sabra10G0115000 Salix brachista HOM05D007162 ORTHO05D007631 1.7e-08 62.4 35 80.0
Sp2g19920 Schrenkiella parvula HOM05D007162 ORTHO05D007631 2.2e-08 62.0 35 77.1
ATR0693G387 Amborella trichopoda HOM05D007162 ORTHO05D007631 2.9e-08 61.6 36 66.7
CiPaw.01G134400 Carya illinoinensis HOM05D007162 ORTHO05D007631 2.9e-08 61.6 35 80.0
Prupe.1G112700 Prunus persica HOM05D007162 ORTHO05D007631 2.9e-08 61.6 35 80.0
Sabra08G0077100 Salix brachista HOM05D006827 ORTHO05D007631 2.9e-08 61.6 35 80.0
Ah.07g201630 Amaranthus hybridus HOM05D007162 ORTHO05D007631 3.8e-08 61.2 35 77.1
Migut.G00033 Erythranthe guttata HOM05D007162 ORTHO05D007631 3.8e-08 61.2 38 71.1
PSO170G0624 Papaver somniferum HOM05D007162 ORTHO05D007631 3.8e-08 61.2 37 73.0
BcaB07g34165 Brassica carinata HOM05D007162 ORTHO05D007631 4.9e-08 60.8 45 62.2
Cc03_g00510 Coffea canephora HOM05D007162 ORTHO05D007631 4.9e-08 60.8 35 77.1
Sc13g0007060 Simmondsia chinensis HOM05D007162 ORTHO05D007631 4.9e-08 60.8 35 82.9
vmacro07965 Vaccinium macrocarpon HOM05D007162 ORTHO05D007631 4.9e-08 60.8 42 69.0
CAN.G484.72 Capsicum annuum HOM05D007162 ORTHO05D007631 1.1e-07 59.7 35 74.3
FvH4_4g20690 Fragaria vesca HOM05D007162 ORTHO05D007631 1.1e-07 59.7 35 74.3
FAN07G2689 Fragaria x ananassa HOM05D007162 ORTHO05D007631 1.1e-07 59.7 35 74.3
FAN12G3043 Fragaria x ananassa HOM05D007162 ORTHO05D007631 1.1e-07 59.7 35 74.3
Nitab4.5_0002150g0050 Nicotiana tabacum HOM05D007162 ORTHO05D007631 1.4e-07 59.3 35 74.3
Oeu046586.1 Olea europaea HOM05D007162 ORTHO05D007631 1.4e-07 59.3 35 74.3
Rhsim04G0242300 Rhododendron simsii HOM05D007162 ORTHO05D007631 1.4e-07 59.3 42 69.0
SalBow8G4721 Salvia bowleyana HOM05D007162 ORTHO05D007631 1.4e-07 59.3 38 68.4
HPP92_017256 Vanilla planifolia HOM05D007162 ORTHO05D007631 1.4e-07 59.3 36 72.2
Actinidia18474 Actinidia chinensis HOM05D007162 ORTHO05D007631 1.9e-07 58.9 42 66.7
EL10Ac1g01146 Beta vulgaris HOM05D007162 ORTHO05D007631 1.9e-07 58.9 48 68.8
Carub.0008s0947 Capsella rubella HOM05D007162 ORTHO05D007631 1.9e-07 58.9 35 71.4
Sopen12g033850 Solanum pennellii HOM05D007162 ORTHO05D007631 1.9e-07 58.9 35 74.3
PGSC0003DMG400004614 Solanum tuberosum HOM05D007162 ORTHO05D007631 2.5e-07 58.5 35 71.4
AL8G23420 Arabidopsis lyrata HOM05D007162 ORTHO05D007631 4.2e-07 57.8 35 68.6
Thhalv10004464m.g Eutrema salsugineum HOM05D007162 ORTHO05D007631 4.2e-07 57.8 35 68.6
CSS0000127 Camellia sinensis var. sinensis HOM05D007162 ORTHO05D007631 7.1e-07 57.0 35 68.6
CSS0043507 Camellia sinensis var. sinensis HOM05D007162 ORTHO05D007631 7.1e-07 57.0 35 68.6
AT5G49610 Arabidopsis thaliana HOM05D007162 ORTHO05D007631 9.3e-07 56.6 35 68.6
BcaC06g30717 Brassica carinata HOM05D007162 ORTHO05D007631 3.5e-06 54.7 35 65.7
BcaNung05953 Brassica carinata HOM05D007162 ORTHO05D007631 3.5e-06 54.7 35 65.7


User provided reference genes

Program Settings