Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 5.5e-137 491.1 277 100.0
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 3.2e-124 448.7 277 89.2
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 5.4e-124 448.0 277 88.8
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 9.2e-124 447.2 277 89.5
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 1.2e-123 446.8 277 89.9
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 1.2e-123 446.8 277 89.5
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.7e-123 445.7 277 89.9
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.7e-123 445.7 277 89.2
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 2.7e-123 445.7 277 89.5
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 3.5e-123 445.3 277 89.5
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 4.6e-123 444.9 277 89.2
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 4.6e-123 444.9 276 90.6
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 5.9e-123 444.5 277 89.5
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 5.9e-123 444.5 277 89.5
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 7.8e-123 444.1 277 89.5
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 1.0e-122 443.7 277 89.2
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 1.0e-122 443.7 277 88.4
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.3e-122 443.4 277 89.5
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 1.7e-122 443.0 277 88.1
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 5.0e-122 441.4 277 88.4
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 5.0e-122 441.4 277 87.4
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 1.1e-121 440.3 277 88.4
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 1.5e-121 439.9 277 87.7
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 1.5e-121 439.9 277 87.4
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 1.5e-121 439.9 277 88.4
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 1.9e-121 439.5 277 87.4
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 2.5e-121 439.1 277 87.7
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 3.3e-121 438.7 277 87.0
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 4.3e-121 438.3 277 87.0
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 2.1e-120 436.0 277 87.7
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 2.1e-120 436.0 277 87.0
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 2.8e-120 435.6 277 86.3
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 3.6e-120 435.3 277 87.4
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 3.6e-120 435.3 277 87.4
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 6.2e-120 434.5 277 86.6
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 8.0e-120 434.1 277 85.9
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 8.0e-120 434.1 277 85.6
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 1.0e-119 433.7 277 86.3
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 1.0e-119 433.7 277 86.6
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 2.3e-119 432.6 277 87.4
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 2.3e-119 432.6 277 87.4
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 3.1e-119 432.2 277 86.3
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 4.0e-119 431.8 277 84.5
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 5.2e-119 431.4 277 85.9
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 5.2e-119 431.4 276 86.6
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 6.8e-119 431.0 277 87.0
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 1.2e-118 430.3 277 85.9
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 2.0e-118 429.5 274 85.0
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 2.0e-118 429.5 277 86.3
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 2.6e-118 429.1 277 86.3
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 2.6e-118 429.1 277 87.4
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 4.4e-118 428.3 277 86.3
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 7.5e-118 427.6 274 84.7
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 9.8e-118 427.2 277 84.8
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 1.3e-117 426.8 277 85.6
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 2.2e-117 426.0 277 83.4
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 2.9e-117 425.6 278 85.6
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 2.9e-117 425.6 277 86.3
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 3.7e-117 425.2 277 83.8
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 4.9e-117 424.9 277 84.8
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 6.4e-117 424.5 277 82.7
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 6.4e-117 424.5 277 85.9
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 1.4e-116 423.3 277 85.6
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 3.2e-116 422.2 275 84.0
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 1.6e-115 419.9 283 84.1
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 2.0e-115 419.5 277 83.0
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 2.0e-115 419.5 301 79.7
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 3.5e-115 418.7 277 85.6
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 4.6e-115 418.3 275 84.0
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 4.6e-115 418.3 275 84.0
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 7.8e-115 417.5 277 86.3
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 1.1e-113 413.7 261 88.1
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 1.9e-113 412.9 280 83.6
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 3.3e-113 412.1 321 74.5
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.6e-112 409.8 261 87.7
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.6e-112 409.8 277 82.7
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 1.1e-111 407.1 277 79.1
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.1e-111 407.1 261 87.0
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 1.8e-111 406.4 278 81.7
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 1.2e-110 403.7 277 80.9
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 2.0e-110 402.9 278 79.9
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 3.4e-110 402.1 275 80.0
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.9e-109 399.1 320 72.5
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 4.9e-109 398.3 277 80.5
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 4.9e-109 398.3 270 84.8
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 8.3e-109 397.5 299 72.9
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 1.9e-108 396.4 318 71.4
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 3.2e-108 395.6 274 82.5
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 4.1e-108 395.2 318 69.2
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 1.7e-106 389.8 255 86.7
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 3.0e-106 389.0 274 74.5
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 1.1e-105 387.1 264 82.6
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 5.6e-105 384.8 278 77.0
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 5.6e-105 384.8 281 77.9
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 7.3e-105 384.4 273 77.3
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.2e-104 383.6 283 75.6
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 3.6e-104 382.1 277 78.3
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 6.8e-103 377.9 269 75.5
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 6.8e-103 377.9 262 79.4
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 4.4e-102 375.2 256 80.5
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 5.8e-102 374.8 256 82.4
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.2e-101 372.9 353 60.1
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 3.7e-101 372.1 275 76.4
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 1.1e-100 370.5 273 77.7
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 1.9e-97 359.8 331 67.1
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 4.7e-96 355.1 230 85.7
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 4.0e-95 352.1 230 83.5
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 5.8e-94 348.2 222 87.8
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 1.4e-92 343.6 277 65.7
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 2.7e-91 339.3 222 85.6
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 3.3e-89 332.4 277 67.1
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 1.3e-88 330.5 268 70.5
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 4.8e-88 328.6 250 75.2
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 4.8e-88 328.6 250 75.2
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 2.6e-86 322.8 274 68.6
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 2.6e-86 322.8 274 64.6
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 2.9e-85 319.3 281 65.5
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.9e-85 319.3 274 68.2
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.9e-85 319.3 313 64.2
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 1.9e-84 316.6 222 82.0
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 1.2e-83 313.9 283 65.4
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 1.3e-69 267.3 187 79.7
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 1.1e-68 264.2 258 59.3
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.9e-65 253.4 287 51.6
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 1.5e-62 243.8 278 53.6
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 5.7e-57 225.3 181 76.8
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 1.6e-56 223.8 156 73.7
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 1.5e-54 217.2 138 81.9
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 2.0e-54 216.9 145 86.9
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 2.5e-52 209.9 129 84.5
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 1.8e-50 203.8 132 79.5
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 8.8e-50 201.4 300 46.3
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 1.3e-40 171.0 97 88.7
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 1.7e-40 170.6 106 81.1
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 9.1e-39 164.9 90 91.1
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 2.7e-35 153.3 84 90.5
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 2.0e-33 147.1 155 58.1
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.2e-29 133.7 74 90.5
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 2.2e-29 133.7 74 90.5
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 1.9e-28 130.6 80 81.2
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 2.5e-28 130.2 80 81.2
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 2.2e-21 107.1 158 48.1
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 8.5e-21 105.1 258 34.9
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 2.1e-19 100.5 158 44.9
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 1.4e-18 97.8 170 40.0
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.0e-18 96.7 71 85.9
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 5.2e-18 95.9 154 39.0
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 1.2e-17 94.7 104 55.8
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 5.7e-17 92.4 158 41.1
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 9.8e-17 91.7 71 78.9
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 1.7e-16 90.9 57 75.4
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 2.2e-16 90.5 147 42.9
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 4.1e-15 86.3 62 79.0
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 3.5e-14 83.2 155 35.5
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 5.9e-14 82.4 46 89.1
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 5.0e-13 79.3 46 78.3
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.3e-12 76.6 46 82.6
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.6e-11 74.3 160 38.8
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 6.1e-11 72.4 43 81.4
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 8.0e-11 72.0 336 25.9
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 1.5e-09 67.8 268 29.9
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 8.3e-08 62.0 140 40.7
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 1.2e-06 58.2 60 55.0


User provided reference genes

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