Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 1.4e-238 829.3 462 100.0
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 8.6e-143 511.1 288 81.6
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 5.6e-142 508.4 288 81.9
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 1.2e-141 507.3 288 81.2
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 1.6e-141 506.9 287 81.2
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 8.1e-141 504.6 286 80.4
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 8.1e-141 504.6 288 80.2
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 8.1e-141 504.6 287 80.8
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 1.4e-140 503.8 285 81.4
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 3.1e-140 502.7 287 80.1
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 5.2e-140 501.9 290 80.7
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 8.9e-140 501.1 288 80.9
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 2.6e-139 499.6 284 79.9
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 2.6e-139 499.6 287 79.8
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 2.6e-139 499.6 287 79.8
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 9.9e-139 497.7 287 78.7
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 1.3e-138 497.3 288 80.9
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 4.9e-138 495.4 289 79.2
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 6.4e-138 495.0 287 79.8
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 2.1e-136 490.0 290 77.6
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 1.3e-135 487.3 300 73.7
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 2.3e-135 486.5 311 73.6
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 3.0e-135 486.1 294 75.5
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 3.0e-135 486.1 285 77.9
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 1.1e-134 484.2 290 76.6
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 7.3e-134 481.5 287 76.3
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 9.6e-134 481.1 281 77.2
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 2.1e-133 479.9 262 80.9
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 2.8e-133 479.6 260 82.3
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 3.6e-133 479.2 263 82.1
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 3.6e-133 479.2 274 78.1
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 4.7e-133 478.8 289 75.1
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 8.1e-133 478.0 288 75.7
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.4e-132 477.2 258 84.5
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 1.4e-132 477.2 287 76.0
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 1.8e-132 476.9 286 75.9
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 1.8e-132 476.9 279 78.5
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 4.0e-132 475.7 296 74.7
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 4.0e-132 475.7 290 75.5
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 4.0e-132 475.7 259 82.6
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 3.4e-131 472.6 269 78.1
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 4.4e-131 472.2 260 81.9
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 5.8e-131 471.9 283 74.9
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 7.6e-131 471.5 280 77.1
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 9.9e-131 471.1 268 78.0
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 9.9e-131 471.1 265 80.4
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 1.3e-130 470.7 269 77.7
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 1.7e-130 470.3 262 79.0
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 2.2e-130 469.9 285 75.1
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 2.9e-130 469.5 270 77.0
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 3.8e-130 469.2 280 76.4
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 4.9e-130 468.8 256 78.5
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 8.4e-130 468.0 260 81.2
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 1.1e-129 467.6 313 70.9
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.4e-129 467.2 290 74.8
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 1.9e-129 466.8 286 74.1
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 1.9e-129 466.8 263 80.2
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 3.2e-129 466.1 288 76.4
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 4.2e-129 465.7 290 74.5
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 5.4e-129 465.3 260 80.4
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 7.1e-129 464.9 288 76.0
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 7.1e-129 464.9 284 76.4
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 1.6e-128 463.8 285 74.0
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 2.1e-128 463.4 259 81.1
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 7.8e-128 461.5 285 74.0
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 1.0e-127 461.1 259 79.9
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 1.3e-127 460.7 293 73.7
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 1.3e-127 460.7 259 79.9
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 1.7e-127 460.3 434 57.1
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.7e-127 460.3 254 79.1
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 2.3e-127 459.9 283 74.9
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 3.9e-127 459.1 256 79.3
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 3.9e-127 459.1 280 74.3
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 5.1e-127 458.8 268 77.6
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 5.1e-127 458.8 285 73.3
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 8.7e-127 458.0 286 73.1
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 2.5e-126 456.4 283 75.6
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 4.3e-126 455.7 259 79.5
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 5.6e-126 455.3 269 77.7
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 7.3e-126 454.9 258 79.8
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 1.3e-125 454.1 275 75.6
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.6e-125 453.8 289 72.3
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 2.1e-125 453.4 288 71.2
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 4.8e-125 452.2 285 73.0
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.8e-125 452.2 290 73.4
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 4.8e-125 452.2 290 73.4
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 2.4e-124 449.9 287 72.1
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 2.4e-124 449.9 285 72.6
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 2.4e-124 449.9 264 77.3
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 1.5e-123 447.2 287 72.5
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 2.0e-123 446.8 254 79.5
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 2.6e-123 446.4 279 73.5
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 3.4e-123 446.0 259 77.6
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 1.3e-122 444.1 287 73.2
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 1.3e-122 444.1 269 78.1
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 1.4e-121 440.7 350 63.1
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 2.4e-121 439.9 247 78.9
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 5.4e-121 438.7 259 75.7
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 9.3e-121 438.0 240 82.5
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 2.1e-120 436.8 304 70.4
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 1.3e-119 434.1 260 75.8
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 1.8e-119 433.7 261 75.5
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.9e-118 430.3 268 73.1
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 1.9e-118 430.3 303 69.6
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 3.3e-118 429.5 240 81.2
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.3e-117 427.6 290 69.0
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 6.2e-117 425.2 281 71.2
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 2.4e-116 423.3 282 70.2
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 3.1e-116 422.9 256 77.7
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 1.5e-115 420.6 241 80.9
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 1.0e-111 407.9 258 72.9
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 1.4e-108 397.5 296 64.2
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 5.3e-108 395.6 331 56.8
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 6.3e-101 372.1 264 66.7
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 1.5e-99 367.5 204 77.9
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 1.1e-97 361.3 206 76.7
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 4.2e-97 359.4 302 58.3
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.3e-95 354.4 291 59.1
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 3.7e-93 346.3 304 54.9
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 2.2e-90 337.0 184 81.0
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 8.8e-87 325.1 198 78.3
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 9.7e-86 321.6 281 56.2
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 1.3e-85 321.2 274 57.7
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 2.4e-84 317.0 173 85.5
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 2.4e-84 317.0 173 85.5
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 2.4e-84 317.0 177 84.2
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 1.5e-83 314.3 245 62.4
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.5e-83 312.8 205 74.6
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 7.7e-83 312.0 173 83.2
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 1.3e-82 311.2 179 81.0
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.3e-79 300.4 194 74.7
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 6.3e-77 292.4 270 56.7
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 1.4e-76 291.2 279 55.6
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 2.7e-72 276.9 206 67.0
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 9.1e-68 261.9 287 49.8
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.7e-66 257.7 234 56.0
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 5.0e-66 256.1 291 46.7
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 6.1e-64 249.2 242 50.4
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 4.1e-60 236.5 191 60.2
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 1.5e-57 228.0 144 76.4
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 2.5e-57 227.3 140 77.9
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 3.2e-57 226.9 206 58.3
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 4.2e-57 226.5 154 72.1
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 1.8e-55 221.1 195 55.9
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 3.1e-52 210.3 223 49.3
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 3.3e-49 200.3 230 47.0
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 4.4e-46 189.9 251 43.8
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 1.4e-44 184.9 215 47.9
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 3.1e-39 167.2 129 63.6
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 5.2e-39 166.4 125 63.2
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 6.6e-34 149.4 84 71.4
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.4e-28 131.7 81 66.7
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 5.2e-15 86.7 54 64.8
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 9.0e-15 85.9 50 64.0
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 9.0e-15 85.9 50 64.0
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 6.9e-07 59.7 148 29.1
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 4.5e-06 57.0 203 28.1
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 4.5e-06 57.0 167 27.5
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 9.9e-06 55.8 239 27.6


User provided reference genes

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