Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 9.4e-170 600.1 309 100.0
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 5.7e-74 282.0 311 51.1
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 4.0e-67 259.2 311 48.2
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 4.8e-65 252.3 311 45.0
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 8.2e-65 251.5 320 46.9
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 2.4e-64 250.0 311 47.6
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 2.0e-63 246.9 329 45.9
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 1.2e-60 237.7 317 44.8
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.0e-59 234.6 316 45.9
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 1.8e-59 233.8 316 44.0
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 2.3e-59 233.4 313 46.0
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 6.8e-59 231.9 317 42.3
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.6e-58 229.9 316 45.3
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 2.6e-58 229.9 316 45.3
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 5.7e-58 228.8 312 44.2
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 1.3e-57 227.6 312 45.2
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 2.2e-57 226.9 308 43.8
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 2.2e-57 226.9 340 42.6
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 1.8e-56 223.8 314 42.4
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 1.8e-56 223.8 312 43.6
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.1e-56 223.0 316 43.7
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 4.1e-56 222.6 318 44.7
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 4.5e-55 219.2 312 43.6
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 1.3e-54 217.6 313 43.8
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 1.7e-54 217.2 314 43.9
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 1.7e-54 217.2 313 43.1
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 2.2e-54 216.9 312 42.9
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 2.9e-54 216.5 311 41.8
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 2.9e-54 216.5 311 43.7
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 2.9e-54 216.5 317 44.2
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 5.0e-54 215.7 313 42.8
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.5e-53 214.2 298 44.0
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 7.2e-53 211.8 312 44.2
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 2.1e-52 210.3 316 38.0
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 2.7e-52 209.9 317 42.6
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 2.7e-52 209.9 321 41.7
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 1.0e-51 208.0 319 42.0
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 1.8e-51 207.2 310 40.3
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 2.3e-51 206.8 311 40.5
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 8.8e-51 204.9 308 40.6
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 8.8e-51 204.9 317 39.4
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 8.8e-51 204.9 317 39.4
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 8.8e-51 204.9 314 41.7
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 8.8e-51 204.9 311 40.8
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 1.2e-50 204.5 291 44.0
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 2.0e-50 203.8 317 41.6
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 2.6e-50 203.4 341 39.9
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 2.6e-50 203.4 311 41.2
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 5.7e-50 202.2 312 41.3
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 5.7e-50 202.2 311 40.8
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 7.5e-50 201.8 351 41.3
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.7e-49 200.7 317 42.3
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 1.7e-49 200.7 320 41.2
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 2.8e-49 199.9 310 40.0
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 2.8e-49 199.9 311 40.5
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 6.3e-49 198.7 323 39.0
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 6.3e-49 198.7 317 38.8
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 1.1e-48 198.0 318 41.8
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 1.1e-48 198.0 310 39.4
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 9.2e-48 194.9 352 38.1
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 1.2e-47 194.5 311 40.2
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 3.5e-47 193.0 337 38.3
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 4.5e-47 192.6 315 40.0
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 5.9e-47 192.2 322 42.2
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 2.9e-46 189.9 316 39.9
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 5.0e-46 189.1 312 37.5
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 8.6e-46 188.3 320 42.2
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 8.6e-46 188.3 311 38.6
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 1.5e-45 187.6 313 40.6
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 1.9e-45 187.2 320 42.5
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 3.3e-45 186.4 310 40.0
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 5.6e-45 185.7 315 39.7
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 1.2e-44 184.5 313 40.6
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 2.1e-44 183.7 289 40.8
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 2.1e-44 183.7 319 38.6
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 2.1e-44 183.7 319 39.2
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 4.7e-44 182.6 341 36.4
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 6.1e-44 182.2 310 39.4
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 1.2e-42 177.9 315 38.7
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 1.2e-42 177.9 340 37.4
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 1.5e-42 177.6 357 36.4
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 2.6e-42 176.8 289 40.5
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 4.4e-42 176.0 314 39.8
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 4.4e-42 176.0 314 39.8
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 2.2e-41 173.7 314 39.5
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 4.9e-41 172.6 328 37.5
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 6.4e-41 172.2 325 38.2
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 1.1e-40 171.4 373 34.3
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 1.8e-40 170.6 307 41.0
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 2.4e-40 170.2 321 38.0
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 1.2e-39 167.9 314 39.2
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 1.2e-39 167.9 311 37.0
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 1.2e-39 167.9 322 37.3
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 2.0e-39 167.2 309 37.9
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 2.3e-38 163.7 309 38.5
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 3.0e-38 163.3 313 38.0
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 1.5e-37 161.0 337 36.8
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 1.9e-37 160.6 310 34.8
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 4.3e-37 159.5 324 36.4
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 4.3e-37 159.5 296 34.8
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 1.6e-36 157.5 313 38.0
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 2.1e-36 157.1 346 35.0
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 4.7e-36 156.0 312 36.9
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 4.7e-36 156.0 317 37.9
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 6.2e-36 155.6 311 36.0
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.5e-34 151.0 229 41.0
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 3.4e-34 149.8 300 37.3
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 2.9e-33 146.7 313 37.4
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 3.7e-33 146.4 308 34.4
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 4.9e-33 146.0 317 34.4
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 8.3e-33 145.2 224 41.5
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 1.9e-32 144.1 412 30.6
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.3e-30 137.9 225 40.9
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 4.7e-28 129.4 320 33.4
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 3.4e-26 123.2 222 37.8
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 1.2e-23 114.8 231 37.2
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 6.0e-23 112.5 268 31.3
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 3.9e-22 109.8 229 38.0
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 6.6e-22 109.0 249 34.5
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 3.3e-21 106.7 343 30.6
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 4.3e-21 106.3 233 33.9
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 6.2e-20 102.4 220 35.5
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 8.1e-20 102.1 109 45.9
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 6.8e-19 99.0 221 35.3
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 1.7e-17 94.4 241 31.1
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 6.4e-17 92.4 95 46.3
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 1.1e-16 91.7 95 44.2
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 1.4e-16 91.3 234 30.8
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 1.4e-16 91.3 68 64.7
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 1.6e-15 87.8 349 27.2
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 7.3e-13 79.0 159 39.6
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 9.6e-13 78.6 308 25.3
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 3.6e-12 76.6 141 36.2
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 3.6e-12 76.6 338 25.4
Mapoly0019s0119 Marchantia polymorpha HOM05D001447 ORTHO05D005923 4.0e-11 73.2 315 27.3
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 5.2e-11 72.8 211 32.7
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 4.4e-10 69.7 104 41.3
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 1.7e-09 67.8 95 42.1
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.9e-09 66.2 58 56.9
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 6.4e-09 65.9 42 59.5
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 2.1e-07 60.8 195 30.3
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 2.1e-07 60.8 101 37.6
BcaC01g05497 Brassica carinata HOM05D001447 ORTHO05D005923 3.5e-07 60.1 77 39.0
BcaC02g08532 Brassica carinata HOM05D001447 ORTHO05D005923 6.6e-06 55.8 74 37.8


User provided reference genes

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