Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J00677 Eucalyptus grandis HOM05D002733 ORTHO05D010023 1.4e-218 762.7 383 100.0
Thecc.09G246300 Theobroma cacao HOM05D002733 ORTHO05D010023 3.0e-48 196.8 411 38.4
QL01p016685 Quercus lobata HOM05D002733 ORTHO05D010023 3.3e-47 193.4 403 38.0
PGR119G1676 Punica granatum HOM05D002733 ORTHO05D010023 3.9e-40 169.9 388 37.6
Atru.chr3.3004 Acer truncatum HOM05D002733 ORTHO05D010023 5.6e-39 166.0 396 35.1
Cfa009898 Carpinus fangiana HOM05D002733 ORTHO05D010023 3.7e-38 163.3 395 37.2
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 5.3e-37 159.5 379 38.3
CiPaw.13G148700 Carya illinoinensis HOM05D002733 ORTHO05D010023 2.2e-35 154.1 396 34.6
COL.COLO4_02755 Corchorus olitorius HOM05D002733 ORTHO05D010023 2.9e-35 153.7 397 35.3
Potri.001G274000 Populus trichocarpa HOM05D002733 ORTHO05D010023 2.9e-35 153.7 391 33.0
Manes.05G200100 Manihot esculenta HOM05D002733 ORTHO05D010023 3.8e-35 153.3 403 33.0
Dinv04578 Davidia involucrata HOM05D002733 ORTHO05D010023 3.5e-33 146.7 391 32.5
Gohir.A07G121200 Gossypium hirsutum HOM05D002733 ORTHO05D010023 1.0e-32 145.2 397 33.0
Glyma.14G036400 Glycine max HOM05D002733 ORTHO05D010023 2.3e-32 144.1 391 33.2
Sabra16G0168800 Salix brachista HOM05D002733 ORTHO05D010023 2.3e-32 144.1 400 31.5
Gorai.001G135300 Gossypium raimondii HOM05D002733 ORTHO05D010023 3.0e-32 143.7 398 33.9
Potri.009G068200 Populus trichocarpa HOM05D002733 ORTHO05D010023 3.0e-32 143.7 388 31.4
Gohir.D07G125500 Gossypium hirsutum HOM05D002733 ORTHO05D010023 3.9e-32 143.3 398 34.2
Hma1.2p1_0460F.1_g157570 Hydrangea macrophylla HOM05D002733 ORTHO05D010023 9.6e-31 138.7 398 34.2
TAR369G1143 Trochodendron aralioides HOM05D002733 ORTHO05D010023 8.2e-30 135.6 380 34.2
LjContig00564g0023278 Lotus japonicus HOM05D002733 ORTHO05D010023 8.5e-27 125.6 382 30.9
MD03G1164300 Malus domestica HOM05D002733 ORTHO05D010023 8.5e-27 125.6 386 31.9
Manes.02G136900 Manihot esculenta HOM05D002733 ORTHO05D010023 1.4e-26 124.8 427 30.4
MD00G1045800 Malus domestica HOM05D002733 ORTHO05D010023 2.5e-26 124.0 384 31.0
Glyma.02G278200 Glycine max HOM05D002733 ORTHO05D010023 4.2e-26 123.2 314 32.2
Prupe.4G260600 Prunus persica HOM05D002733 ORTHO05D010023 7.2e-26 122.5 406 32.3
Ciclev10017459m.g Citrus clementina HOM05D002733 ORTHO05D010023 2.1e-25 120.9 391 30.4
Phvul.008G202700 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 3.6e-25 120.2 318 34.3
CANSAT54G1196 Cannabis sativa HOM05D002733 ORTHO05D010023 1.0e-24 118.6 401 33.4
Migut.D00675 Erythranthe guttata HOM05D002733 ORTHO05D010023 1.3e-24 118.2 380 31.6
Medtr5g089100 Medicago truncatula HOM05D002733 ORTHO05D010023 2.3e-24 117.5 377 30.5
Psat0s1289g0080 Pisum sativum HOM05D002733 ORTHO05D010023 2.3e-24 117.5 410 32.2
Dinv36151 Davidia involucrata HOM05D002733 ORTHO05D010023 3.0e-24 117.1 337 36.5
Nitab4.5_0007012g0030 Nicotiana tabacum HOM05D018239 ORTHO05D010023 6.7e-24 115.9 406 31.3
TWI79G0642 Tripterygium wilfordii HOM05D002733 ORTHO05D010023 8.7e-24 115.5 369 29.8
Peaxi162Scf00004g00424 Petunia axillaris HOM05D018239 ORTHO05D010023 1.1e-23 115.2 401 32.9
VMungo0647G1446 Vigna mungo HOM05D002733 ORTHO05D010023 1.5e-23 114.8 354 30.5
Oeu025912.1 Olea europaea HOM05D002733 ORTHO05D010023 1.9e-23 114.4 392 31.4
Phvul.008G165900 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 2.8e-22 110.5 311 34.4
FAN15G1799 Fragaria x ananassa HOM05D002733 ORTHO05D010023 1.1e-21 108.6 384 30.5
DCAR_029984 Daucus carota HOM05D002733 ORTHO05D010023 1.4e-21 108.2 399 29.8
Actinidia06978 Actinidia chinensis HOM05D002733 ORTHO05D010023 1.8e-21 107.8 273 34.8
FAN20G0750 Fragaria x ananassa HOM05D002733 ORTHO05D010023 5.3e-21 106.3 384 30.5
RcHm_v2.0_Chr6g0258931 Rosa chinensis HOM05D002733 ORTHO05D010023 9.1e-21 105.5 382 30.4
FAN27G2498 Fragaria x ananassa HOM05D002733 ORTHO05D010023 1.5e-20 104.8 378 30.4
arahy.Tifrunner.gnm1.ann1.88337C Arachis hypogaea HOM05D002733 ORTHO05D010023 2.0e-20 104.4 396 30.6
Sopen11g024780 Solanum pennellii HOM05D018239 ORTHO05D010023 2.0e-20 104.4 403 32.0
arahy.Tifrunner.gnm1.ann1.MI3W0U Arachis hypogaea HOM05D002733 ORTHO05D010023 3.4e-20 103.6 396 30.6
Solyc11g065010.1 Solanum lycopersicum HOM05D018239 ORTHO05D010023 5.9e-20 102.8 393 31.3
TPR.G16419 Trifolium pratense HOM05D002733 ORTHO05D010023 7.7e-20 102.4 396 29.8
MSTRG.18469 Avicennia marina HOM05D002733 ORTHO05D010023 1.3e-19 101.7 399 32.8
FvH4_2g06740 Fragaria vesca HOM05D002733 ORTHO05D010023 1.3e-19 101.7 384 28.9
FAN24G3374 Fragaria x ananassa HOM05D002733 ORTHO05D010023 2.2e-19 100.9 385 29.1
Lalb_Chr10g0106141 Lupinus albus HOM05D002733 ORTHO05D010023 2.2e-19 100.9 369 29.8
ClCG02G022730 Citrullus lanatus HOM05D002733 ORTHO05D010023 2.9e-19 100.5 290 31.7
CAN.G468.8 Capsicum annuum HOM05D018239 ORTHO05D010023 3.8e-19 100.1 397 31.0
Sed0027264 Sechium edule HOM05D002733 ORTHO05D010023 5.0e-19 99.8 270 33.7
AUR62000212 Chenopodium quinoa HOM05D002733 ORTHO05D010023 1.4e-18 98.2 391 31.7
Nitab4.5_0006764g0040 Nicotiana tabacum HOM05D018239 ORTHO05D010023 2.5e-18 97.4 390 30.3
PGSC0003DMG400009447 Solanum tuberosum HOM05D018239 ORTHO05D010023 2.5e-18 97.4 405 30.4
ECA238G3721 Erigeron canadensis HOM05D002733 ORTHO05D010023 1.2e-17 95.1 375 28.8
Ca_06190_v3 Cicer arietinum L. HOM05D002733 ORTHO05D010023 1.6e-17 94.7 382 30.9
Lsat_1_v5_gn_2_32340 Lactuca sativa HOM05D002733 ORTHO05D010023 3.6e-17 93.6 345 30.4
Sabra09G0051300 Salix brachista HOM05D002733 ORTHO05D010023 3.6e-17 93.6 86 55.8
AUR62006558 Chenopodium quinoa HOM05D002733 ORTHO05D010023 4.6e-17 93.2 390 31.0
Ah.06g194720 Amaranthus hybridus HOM05D002733 ORTHO05D010023 6.1e-17 92.8 367 30.5
PGR102G0853 Punica granatum HOM05D002733 ORTHO05D010023 1.4e-16 91.7 385 29.1
MELO3C014550.2 Cucumis melo HOM05D002733 ORTHO05D010023 3.0e-16 90.5 313 31.0
Dinv36152 Davidia involucrata HOM05D000362 ORTHO05D000325 3.0e-16 90.5 159 44.7
CsaV3_6G038850 Cucumis sativus L. HOM05D002733 ORTHO05D010023 6.7e-16 89.4 310 30.3
Aqoxy2G00438 Aquilegia oxysepala HOM05D002733 ORTHO05D010023 2.6e-15 87.4 381 30.2
Rhsim13G0206300 Rhododendron simsii HOM05D002733 ORTHO05D010023 7.4e-15 85.9 233 33.5
MBI13_g09212_MAGBIO Magnolia biondii HOM05D002733 ORTHO05D010023 1.7e-14 84.7 379 29.6
Lsat_1_v5_gn_2_32520 Lactuca sativa HOM05D002733 ORTHO05D010023 1.1e-13 82.0 191 34.0
HanXRQChr03g0090311 Helianthus annuus HOM05D002733 ORTHO05D010023 6.9e-13 79.3 192 33.9
Sc16g0010940 Simmondsia chinensis HOM05D002733 ORTHO05D010023 6.5e-11 72.8 127 41.7
TAR633G0275 Trochodendron aralioides HOM05D002733 ORTHO05D010023 7.2e-10 69.3 166 36.7
MSTRG.20139 Avicennia marina HOM05D001841 ORTHO05D001767 9.4e-10 68.9 212 34.9
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 4.7e-09 66.6 142 35.2
Peaxi162Scf00684g00566 Petunia axillaris HOM05D001841 ORTHO05D001767 7.9e-09 65.9 213 31.9
Oeu013688.1 Olea europaea HOM05D001841 ORTHO05D001767 1.0e-08 65.5 99 44.4
ATR0307G041 Amborella trichopoda HOM05D002733 ORTHO05D010023 1.8e-08 64.7 194 33.5
Oeu007260.1 Olea europaea HOM05D001841 ORTHO05D001767 1.8e-08 64.7 217 32.7
Lalb_Chr05g0219031 Lupinus albus HOM05D001841 ORTHO05D001767 5.2e-08 63.2 206 32.0
CDE03G0088 Ceratophyllum demersum HOM05D000370 ORTHO05D001767 1.5e-07 61.6 201 31.8
BcaB06g27216 Brassica carinata HOM05D001841 ORTHO05D001767 2.0e-07 61.2 205 34.6
Lsat_1_v5_gn_5_113300 Lactuca sativa HOM05D001841 ORTHO05D001767 2.6e-07 60.8 209 30.6
CARHR120050 Cardamine hirsuta HOM05D001841 ORTHO05D001767 5.7e-07 59.7 103 41.7
unitig_37.g12810 Utricularia gibba HOM05D001841 ORTHO05D001767 5.7e-07 59.7 199 31.7
SGA_v2.0_scaffold29G12225 Striga asiatica HOM05D002733 ORTHO05D010023 7.4e-07 59.3 221 30.8
CAN.G1166.17 Capsicum annuum HOM05D001841 ORTHO05D001767 9.7e-07 58.9 108 39.8
Lsat_1_v5_gn_3_109980 Lactuca sativa HOM05D002733 ORTHO05D010023 1.7e-06 58.2 301 27.2
Nitab4.5_0000736g0050 Nicotiana tabacum HOM05D001841 ORTHO05D001767 1.7e-06 58.2 219 32.0
Sp4g07730 Schrenkiella parvula HOM05D001841 ORTHO05D001767 2.8e-06 57.4 205 30.2
ATR0097G009 Amborella trichopoda HOM05D001841 ORTHO05D001767 4.8e-06 56.6 170 32.9
MSTRG.16762 Avicennia marina HOM05D001841 ORTHO05D001767 4.8e-06 56.6 196 33.2
BolC3t15576H Brassica oleracea HOM05D001841 ORTHO05D001767 4.8e-06 56.6 200 29.0
C03p32340 Brassica napus HOM05D001841 ORTHO05D001767 6.3e-06 56.2 216 28.7
BraA03t11907Z Brassica rapa HOM05D001841 ORTHO05D001767 8.2e-06 55.8 199 30.7
Dinv42133 Davidia involucrata HOM05D001841 ORTHO05D001767 8.2e-06 55.8 111 39.6
Migut.B00315 Erythranthe guttata HOM05D001841 ORTHO05D001767 8.2e-06 55.8 224 29.9


User provided reference genes

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