Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J00596 Eucalyptus grandis HOM05D007375 ORTHO05D009293 6.3e-111 404.4 257 100.0
Thecc.09G269700 Theobroma cacao HOM05D007375 ORTHO05D009293 1.1e-17 94.7 42 92.9
Hma1.2p1_1811F.1_g303540 Hydrangea macrophylla HOM05D007375 ORTHO05D009293 5.3e-17 92.4 47 78.7
Nn6g33246 Nelumbo nucifera HOM05D007375 ORTHO05D009293 6.9e-17 92.0 42 90.5
Rhsim01G0198300 Rhododendron simsii HOM05D007375 ORTHO05D009293 6.9e-17 92.0 52 69.2
FAN11G1199 Fragaria x ananassa HOM05D007375 ORTHO05D009293 1.5e-16 90.9 42 90.5
GSVIVG01037526001 Vitis vinifera HOM05D007375 ORTHO05D009293 1.5e-16 90.9 41 90.2
Duzib168G1424 Durio zibethinus HOM05D007375 ORTHO05D009293 2.6e-16 90.1 41 87.8
Gohir.A07G113900 Gossypium hirsutum HOM05D007375 ORTHO05D009293 2.6e-16 90.1 41 87.8
Gohir.D07G117600 Gossypium hirsutum HOM05D007375 ORTHO05D009293 2.6e-16 90.1 41 87.8
Gorai.001G126500 Gossypium raimondii HOM05D007375 ORTHO05D009293 2.6e-16 90.1 41 87.8
Potri.009G155700 Populus trichocarpa HOM05D007375 ORTHO05D009293 2.6e-16 90.1 44 79.5
Sabra09G0122000 Salix brachista HOM05D007375 ORTHO05D009293 2.6e-16 90.1 44 79.5
FAN16G0622 Fragaria x ananassa HOM05D007375 ORTHO05D009293 3.4e-16 89.7 42 88.1
CSS0023504 Camellia sinensis var. sinensis HOM05D007375 ORTHO05D009293 4.5e-16 89.4 44 79.5
Sc21g0006670 Simmondsia chinensis HOM05D007375 ORTHO05D009293 4.5e-16 89.4 47 74.5
Cc01_g08020 Coffea canephora HOM05D007375 ORTHO05D009293 5.9e-16 89.0 42 85.7
Duzib170G0509 Durio zibethinus HOM05D007375 ORTHO05D009293 5.9e-16 89.0 41 85.4
FvH4_3g26920 Fragaria vesca HOM05D007375 ORTHO05D009293 7.7e-16 88.6 41 90.2
Manes.04G063400 Manihot esculenta HOM05D007375 ORTHO05D009293 7.7e-16 88.6 41 87.8
vmacro14306 Vaccinium macrocarpon HOM05D007375 ORTHO05D009293 7.7e-16 88.6 42 83.3
CANSAT54G0888 Cannabis sativa HOM05D007375 ORTHO05D009293 1.0e-15 88.2 41 87.8
FAN25G3479 Fragaria x ananassa HOM05D000507 ORTHO05D000416 1.0e-15 88.2 54 70.4
CiPaw.13G125500 Carya illinoinensis HOM05D007375 ORTHO05D009293 1.3e-15 87.8 41 87.8
Atru.chr3.3047 Acer truncatum HOM05D007375 ORTHO05D009293 1.7e-15 87.4 45 77.8
Atru.chr3.3056 Acer truncatum HOM05D007375 ORTHO05D009293 1.7e-15 87.4 45 77.8
EL10Ac7g16260 Beta vulgaris HOM05D007375 ORTHO05D009293 1.7e-15 87.4 43 81.4
Cfa010224 Carpinus fangiana HOM05D007375 ORTHO05D009293 1.7e-15 87.4 52 67.3
Ciclev10029424m.g Citrus clementina HOM05D007375 ORTHO05D009293 1.7e-15 87.4 44 79.5
FAN21G2595 Fragaria x ananassa HOM05D007375 ORTHO05D009293 1.7e-15 87.4 41 87.8
MD03G1161000 Malus domestica HOM05D007375 ORTHO05D009293 1.7e-15 87.4 41 87.8
MD11G1177000 Malus domestica HOM05D007375 ORTHO05D009293 1.7e-15 87.4 41 87.8
RcHm_v2.0_Chr5g0049271 Rosa chinensis HOM05D007375 ORTHO05D009293 1.7e-15 87.4 41 87.8
TAR623G0701 Trochodendron aralioides HOM05D007375 ORTHO05D009293 1.7e-15 87.4 41 87.8
AUR62020198 Chenopodium quinoa HOM05D007375 ORTHO05D009293 2.2e-15 87.0 45 77.8
Migut.N02430 Erythranthe guttata HOM05D007375 ORTHO05D009293 5.0e-15 85.9 41 85.4
Os01g0930000 Oryza sativa ssp. japonica HOM05D007375 ORTHO05D009293 5.0e-15 85.9 47 70.2
Phvul.008G210600 Phaseolus vulgaris HOM05D007375 ORTHO05D009293 5.0e-15 85.9 40 82.5
SEGI_05685 Sequoiadendron giganteum HOM05D007375 ORTHO05D009293 5.0e-15 85.9 45 75.6
ATR0697G291 Amborella trichopoda HOM05D007375 ORTHO05D009293 8.5e-15 85.1 41 82.9
ECA233G1923 Erigeron canadensis HOM05D000870 ORTHO05D000715 8.5e-15 85.1 45 73.3
QL01p018876 Quercus lobata HOM05D007375 ORTHO05D009293 8.5e-15 85.1 40 85.0
ClCG06G014160 Citrullus lanatus HOM05D007375 ORTHO05D009293 1.1e-14 84.7 41 80.5
MELO3C017379.2 Cucumis melo HOM05D007375 ORTHO05D009293 1.1e-14 84.7 41 80.5
HanXRQChr13g0404191 Helianthus annuus HOM05D007375 ORTHO05D009293 1.1e-14 84.7 45 71.1
MSTRG.18802 Avicennia marina HOM05D007375 ORTHO05D009293 1.4e-14 84.3 41 82.9
Lsat_1_v5_gn_6_49101 Lactuca sativa HOM05D007375 ORTHO05D009293 1.4e-14 84.3 45 73.3
PSO339G5659 Papaver somniferum HOM05D007375 ORTHO05D009293 1.4e-14 84.3 40 82.5
PSO384G3190 Papaver somniferum HOM05D007375 ORTHO05D009293 1.4e-14 84.3 40 82.5
Peaxi162Scf00259g00119 Petunia axillaris HOM05D007375 ORTHO05D009293 1.9e-14 84.0 41 82.9
CDE07G1152 Ceratophyllum demersum HOM05D007375 ORTHO05D009293 2.5e-14 83.6 41 78.0
CsaV3_1G004520 Cucumis sativus L. HOM05D007375 ORTHO05D009293 4.2e-14 82.8 41 78.0
Nitab4.5_0002498g0050 Nicotiana tabacum HOM05D007375 ORTHO05D009293 4.2e-14 82.8 41 82.9
Nitab4.5_0007815g0030 Nicotiana tabacum HOM05D007375 ORTHO05D009293 4.2e-14 82.8 41 82.9
Actinidia22459 Actinidia chinensis HOM05D007375 ORTHO05D009293 5.5e-14 82.4 40 80.0
Aa31LG2G17160 Aethionema arabicum HOM05D007375 ORTHO05D009293 5.5e-14 82.4 42 78.6
CAN.G742.2 Capsicum annuum HOM05D007375 ORTHO05D009293 5.5e-14 82.4 38 86.8
Solyc11g071710.2 Solanum lycopersicum HOM05D007375 ORTHO05D009293 5.5e-14 82.4 38 86.8
Sopen11g029380 Solanum pennellii HOM05D007375 ORTHO05D009293 5.5e-14 82.4 38 86.8
Lj2E833T0 Lonicera japonica HOM05D007375 ORTHO05D009293 7.2e-14 82.0 42 78.6
LjContig00564g0003226 Lotus japonicus HOM05D007375 ORTHO05D009293 7.2e-14 82.0 41 78.0
VMungo0647G0066 Vigna mungo HOM05D007375 ORTHO05D009293 7.2e-14 82.0 40 77.5
Zm00001eb370040 Zea mays HOM05D007375 ORTHO05D009293 9.4e-14 81.6 48 68.8
AagrBONN_evm.TU.Sc2ySwM_362.1659 Anthoceros agrestis HOM05D007375 ORTHO05D009293 1.2e-13 81.3 45 68.9
Sed0019994 Sechium edule HOM05D007375 ORTHO05D009293 1.2e-13 81.3 41 75.6
Glyma.02G271400 Glycine max HOM05D007375 ORTHO05D009293 1.6e-13 80.9 41 75.6
Psat2g023920 Pisum sativum HOM05D007375 ORTHO05D009293 2.7e-13 80.1 41 78.0
Lalb_Chr10g0105741 Lupinus albus HOM05D007375 ORTHO05D009293 3.6e-13 79.7 40 77.5
PGSC0003DMG401003010 Solanum tuberosum HOM05D007375 ORTHO05D009293 4.7e-13 79.3 38 84.2
Sp5g17280 Schrenkiella parvula HOM05D007375 ORTHO05D009293 6.1e-13 79.0 41 73.2
AT3G44020 Arabidopsis thaliana HOM05D007375 ORTHO05D009293 7.9e-13 78.6 40 77.5
Carub.0005s0977 Capsella rubella HOM05D007375 ORTHO05D009293 7.9e-13 78.6 40 77.5
CARHR152710 Cardamine hirsuta HOM05D007375 ORTHO05D009293 7.9e-13 78.6 40 77.5
Thhalv10021645m.g Eutrema salsugineum HOM05D007375 ORTHO05D009293 7.9e-13 78.6 41 70.7
HPP92_000979 Vanilla planifolia HOM05D007375 ORTHO05D009293 1.0e-12 78.2 41 73.2
Medtr5g086670 Medicago truncatula HOM05D007375 ORTHO05D009293 1.4e-12 77.8 39 79.5
BcaB01g01208 Brassica carinata HOM05D007375 ORTHO05D009293 1.8e-12 77.4 40 75.0
BcaC01g02084 Brassica carinata HOM05D007375 ORTHO05D009293 1.8e-12 77.4 40 75.0
A06p22290 Brassica napus HOM05D007375 ORTHO05D009293 1.8e-12 77.4 40 75.0
C03p68750 Brassica napus HOM05D007375 ORTHO05D009293 1.8e-12 77.4 40 75.0
BolC3t19129H Brassica oleracea HOM05D007375 ORTHO05D009293 1.8e-12 77.4 40 75.0
BraA06t25313Z Brassica rapa HOM05D007375 ORTHO05D009293 1.8e-12 77.4 40 75.0
AL5G22060 Arabidopsis lyrata HOM05D007375 ORTHO05D009293 2.3e-12 77.0 41 73.2
Mapoly0036s0048 Marchantia polymorpha HOM05D007375 ORTHO05D009293 1.5e-11 74.3 41 73.2
Pp3c7_23060 Physcomitrium patens HOM05D007375 ORTHO05D009293 4.4e-11 72.8 40 72.5
Pp3c11_5080 Physcomitrium patens HOM05D007375 ORTHO05D009293 7.4e-11 72.0 40 72.5
arahy.Tifrunner.gnm1.ann1.MUTN5S Arachis hypogaea HOM05D007375 ORTHO05D009293 3.7e-10 69.7 35 71.4
arahy.Tifrunner.gnm1.ann1.R1KXAM Arachis hypogaea HOM05D007375 ORTHO05D009293 3.7e-10 69.7 35 71.4
COL.COLO4_25390 Corchorus olitorius HOM05D007375 ORTHO05D009293 2.4e-09 67.0 31 87.1
Hund18815 Selenicereus undatus HOM05D007375 ORTHO05D009293 4.5e-08 62.8 33 75.8
unitig_22.g6168 Utricularia gibba HOM05D007375 ORTHO05D009293 6.5e-07 58.9 29 86.2
SGA_v2.0_scaffold7G04014 Striga asiatica HOM05D007375 ORTHO05D009293 9.4e-06 55.1 27 85.2


User provided reference genes

Program Settings