Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 0.0e+00 1104.4 564 100.0
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 8.9e-259 896.7 542 82.3
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 1.2e-258 896.3 544 83.1
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 5.8e-258 894.0 543 82.7
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 1.0e-254 883.2 534 80.9
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 1.3e-254 882.9 544 80.7
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 1.3e-254 882.9 534 81.6
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 1.2e-252 876.3 538 80.9
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 3.6e-252 874.8 544 79.4
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 1.1e-251 873.2 538 80.9
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 1.8e-251 872.5 544 80.5
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 2.3e-251 872.1 545 78.5
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 6.8e-251 870.5 534 81.1
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 1.2e-250 869.8 538 80.3
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 1.5e-250 869.4 611 73.8
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.5e-250 869.4 534 81.3
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.5e-250 869.4 534 80.9
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 2.0e-250 869.0 544 80.0
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 3.4e-250 868.2 537 80.1
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 1.7e-249 865.9 549 79.2
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 1.7e-249 865.9 553 77.9
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 3.2e-248 861.7 528 80.1
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 4.1e-248 861.3 545 78.0
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 9.2e-248 860.1 534 79.2
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 4.6e-247 857.8 536 78.7
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 6.0e-247 857.4 546 77.5
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 7.8e-247 857.1 537 78.8
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.0e-246 856.7 534 79.0
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 2.3e-246 855.5 538 79.2
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 3.0e-246 855.1 538 79.2
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 1.9e-245 852.4 537 78.0
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 3.3e-245 851.7 542 77.3
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 4.3e-245 851.3 533 79.5
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.6e-244 849.4 535 78.7
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.8e-244 848.6 535 78.7
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 8.1e-244 847.0 553 77.2
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.8e-243 845.9 533 78.6
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 5.2e-243 844.3 535 78.9
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 2.6e-242 842.0 528 79.7
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 4.4e-242 841.3 535 78.3
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 9.9e-242 840.1 544 76.5
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 1.7e-241 839.3 528 79.5
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 2.2e-241 839.0 561 75.8
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 2.2e-241 839.0 528 78.2
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 1.1e-240 836.6 528 78.0
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.4e-240 836.3 533 78.0
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 1.4e-240 836.3 526 78.5
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 1.9e-240 835.9 528 77.7
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 5.4e-240 834.3 533 77.9
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 7.1e-240 833.9 525 77.9
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 1.6e-239 832.8 528 78.2
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 7.8e-239 830.5 534 76.6
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 1.0e-238 830.1 548 75.4
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 1.5e-237 826.2 544 76.3
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 2.5e-237 825.5 504 79.2
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 2.8e-236 822.0 544 74.1
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 1.8e-235 819.3 586 71.5
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 3.4e-234 815.1 544 76.5
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 4.5e-234 814.7 543 76.4
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 5.8e-234 814.3 544 76.3
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 7.6e-234 813.9 529 75.2
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 9.9e-234 813.5 531 75.1
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 2.4e-232 808.9 544 74.1
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 4.2e-232 808.1 544 75.0
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 5.4e-232 807.7 538 74.7
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 9.3e-232 807.0 533 75.0
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 2.1e-231 805.8 534 74.5
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 4.6e-231 804.7 534 74.2
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 6.0e-231 804.3 531 75.5
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 1.0e-230 803.5 520 75.8
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 6.7e-230 800.8 543 73.5
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 1.5e-229 799.7 534 73.8
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 1.5e-229 799.7 534 76.0
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 1.9e-229 799.3 532 74.2
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 2.5e-229 798.9 543 73.1
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 3.3e-229 798.5 536 74.1
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 4.3e-229 798.1 534 73.4
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 4.3e-229 798.1 534 74.0
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 9.6e-229 797.0 541 74.1
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 1.6e-228 796.2 529 73.9
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 2.1e-228 795.8 528 74.4
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 2.1e-228 795.8 528 74.4
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 2.1e-228 795.8 546 72.7
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 3.7e-228 795.0 537 75.0
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 4.8e-228 794.7 534 73.8
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 6.2e-228 794.3 529 73.9
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 1.4e-227 793.1 528 74.1
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 2.0e-226 789.3 554 72.7
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 4.5e-226 788.1 537 72.4
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 9.9e-226 786.9 536 72.4
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.3e-225 786.6 543 72.6
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.9e-225 785.4 538 74.0
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 1.1e-224 783.5 531 74.2
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.2e-223 780.0 533 74.1
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 3.5e-223 778.5 539 70.1
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 2.3e-222 775.8 523 73.2
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.3e-220 770.0 530 73.8
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 1.3e-220 770.0 539 72.5
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 1.3e-220 770.0 558 68.6
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 2.8e-220 768.8 529 73.2
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 3.7e-220 768.5 529 73.2
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 4.8e-220 768.1 533 73.2
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.8e-219 766.1 530 73.4
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 2.4e-219 765.8 542 71.4
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 3.4e-218 761.9 527 72.5
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 3.8e-217 758.4 535 72.5
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 6.5e-217 757.7 474 78.7
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 5.5e-216 754.6 574 67.1
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 1.2e-215 753.4 537 70.9
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 6.0e-215 751.1 542 70.8
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 6.0e-215 751.1 576 66.7
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 8.7e-214 747.3 541 71.0
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.1e-213 746.9 588 67.3
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 1.9e-213 746.1 530 69.6
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 6.3e-212 741.1 611 63.7
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 4.3e-205 718.4 530 67.0
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 7.7e-202 707.6 475 73.3
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 3.9e-198 695.3 499 66.7
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 1.3e-196 690.3 556 63.5
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 3.7e-196 688.7 433 79.2
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 7.0e-187 657.9 545 64.2
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 6.5e-185 651.4 453 73.5
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 1.9e-184 649.8 545 60.7
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 1.4e-174 617.1 533 58.0
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.5e-173 613.6 415 74.2
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 2.8e-172 609.4 536 58.2
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 1.8e-163 580.1 396 70.2
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 7.0e-163 578.2 397 70.0
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 7.8e-162 574.7 397 69.8
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.1e-160 570.9 367 76.8
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 5.6e-160 568.5 359 81.1
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 3.3e-136 489.6 533 48.6
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 1.5e-128 464.2 509 46.8
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 2.5e-128 463.4 322 72.4
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 6.7e-113 412.1 251 81.3
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 1.9e-112 410.6 333 63.1
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 8.4e-100 368.6 220 78.6
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 3.2e-83 313.5 195 73.8
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.7e-68 264.6 178 75.8
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 9.4e-67 258.8 195 69.7
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 8.0e-50 202.6 151 65.6
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 1.1e-46 192.2 146 66.4
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 1.3e-44 185.3 117 74.4
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.8e-41 174.9 120 72.5
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 1.7e-36 158.3 112 67.9
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 1.2e-26 125.6 85 71.8
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 2.1e-26 124.8 83 74.7
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 4.4e-24 117.1 96 58.3
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 1.1e-22 112.5 89 64.0
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 3.5e-21 107.5 125 45.6
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 2.5e-19 101.3 109 51.4
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 6.2e-18 96.7 64 82.8
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 1.3e-10 72.4 55 65.5
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 9.3e-06 56.2 108 35.2


User provided reference genes

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