Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J00410 Eucalyptus grandis HOM05D005484 ORTHO05D006761 1.3e-149 533.1 274 100.0
PGR119G0112 Punica granatum HOM05D005484 ORTHO05D006761 7.5e-78 294.7 295 62.7
Manes.04G011000 Manihot esculenta HOM05D005484 ORTHO05D006761 9.5e-73 277.7 226 69.5
QL01p014158 Quercus lobata HOM05D005484 ORTHO05D006761 4.7e-72 275.4 299 59.9
Manes.11G155200 Manihot esculenta HOM05D005484 ORTHO05D006761 3.1e-71 272.7 219 69.9
GSVIVG01031426001 Vitis vinifera HOM05D005484 ORTHO05D006761 3.1e-71 272.7 279 61.6
CiPaw.14G105100 Carya illinoinensis HOM05D005484 ORTHO05D006761 1.3e-69 267.3 298 57.0
ClCG01G013990 Citrullus lanatus HOM05D005484 ORTHO05D006761 2.2e-69 266.5 286 58.7
Potri.009G151400 Populus trichocarpa HOM05D005484 ORTHO05D006761 2.9e-69 266.2 284 59.9
Rhsim13G0103500 Rhododendron simsii HOM05D005484 ORTHO05D006761 2.9e-69 266.2 303 57.4
Cfa010112 Carpinus fangiana HOM05D005484 ORTHO05D006761 4.9e-69 265.4 299 59.2
Actinidia24166 Actinidia chinensis HOM05D005484 ORTHO05D006761 4.1e-68 262.3 253 62.5
CSS0041747 Camellia sinensis var. sinensis HOM05D005484 ORTHO05D006761 5.4e-68 261.9 239 64.9
Sabra09G0119900 Salix brachista HOM05D005484 ORTHO05D006761 7.1e-68 261.5 279 59.5
Aqoxy1G01005 Aquilegia oxysepala HOM05D005484 ORTHO05D006761 9.2e-68 261.2 247 59.1
TAR623G0584 Trochodendron aralioides HOM05D005484 ORTHO05D006761 9.2e-68 261.2 306 56.5
Ciclev10028468m.g Citrus clementina HOM05D005484 ORTHO05D006761 2.7e-67 259.6 282 57.4
Nn2g13932 Nelumbo nucifera HOM05D005484 ORTHO05D006761 4.6e-67 258.8 279 57.3
vmacro03234 Vaccinium macrocarpon HOM05D005484 ORTHO05D006761 4.6e-67 258.8 177 79.1
MELO3C004840.2 Cucumis melo HOM05D005484 ORTHO05D006761 6.0e-67 258.5 289 57.4
Duzib170G0418 Durio zibethinus HOM05D005484 ORTHO05D006761 6.0e-67 258.5 310 54.8
Migut.N02528 Erythranthe guttata HOM05D005484 ORTHO05D006761 7.8e-67 258.1 256 61.7
Os03g0684400 Oryza sativa ssp. japonica HOM05D005484 ORTHO05D006761 1.3e-66 257.3 240 64.2
arahy.Tifrunner.gnm1.ann1.9XN6EE Arachis hypogaea HOM05D005484 ORTHO05D006761 1.7e-66 256.9 297 56.6
Glyma.12G180000 Glycine max HOM05D005484 ORTHO05D006761 1.7e-66 256.9 266 61.3
Thecc.09G294600 Theobroma cacao HOM05D005484 ORTHO05D006761 1.7e-66 256.9 299 56.5
Atru.chr3.3424 Acer truncatum HOM05D005484 ORTHO05D006761 2.3e-66 256.5 227 64.8
Ca_01692_v3 Cicer arietinum L. HOM05D005484 ORTHO05D006761 2.3e-66 256.5 292 57.5
Ca_30938_v3 Cicer arietinum L. HOM05D005484 ORTHO05D006761 2.3e-66 256.5 292 57.5
Glyma.13G320800 Glycine max HOM05D005484 ORTHO05D006761 5.1e-66 255.4 276 59.8
TWI31G0675 Tripterygium wilfordii HOM05D005484 ORTHO05D006761 5.1e-66 255.4 290 56.9
arahy.Tifrunner.gnm1.ann1.TP1LAH Arachis hypogaea HOM05D005484 ORTHO05D006761 6.6e-66 255.0 297 55.6
RcHm_v2.0_Chr5g0055951 Rosa chinensis HOM05D005484 ORTHO05D006761 8.6e-66 254.6 227 65.2
THA.LOC104799526 Tarenaya hassleriana HOM05D005484 ORTHO05D006761 8.6e-66 254.6 171 78.9
Medtr2g084565 Medicago truncatula HOM05D005484 ORTHO05D006761 1.9e-65 253.4 221 63.8
COL.COLO4_19256 Corchorus olitorius HOM05D005484 ORTHO05D006761 2.5e-65 253.1 305 55.1
Sp6g22590 Schrenkiella parvula HOM05D005484 ORTHO05D006761 2.5e-65 253.1 172 77.3
SGA_v2.0_scaffold466G52019 Striga asiatica HOM05D005484 ORTHO05D006761 2.5e-65 253.1 201 72.6
A10p18190 Brassica napus HOM05D005484 ORTHO05D006761 3.3e-65 252.7 172 77.3
BraA10t43894Z Brassica rapa HOM05D005484 ORTHO05D006761 3.3e-65 252.7 172 77.3
FAN16G1757 Fragaria x ananassa HOM05D005484 ORTHO05D006761 3.3e-65 252.7 199 71.9
AL6G33940 Arabidopsis lyrata HOM05D005484 ORTHO05D006761 4.3e-65 252.3 171 77.8
Thhalv10013483m.g Eutrema salsugineum HOM05D005484 ORTHO05D006761 4.3e-65 252.3 171 77.8
Phvul.005G128800 Phaseolus vulgaris HOM05D005484 ORTHO05D006761 4.3e-65 252.3 232 64.2
DCAR_015491 Daucus carota HOM05D005484 ORTHO05D006761 5.6e-65 251.9 217 67.3
Gohir.A09G086400 Gossypium hirsutum HOM05D005484 ORTHO05D006761 5.6e-65 251.9 278 57.2
Prupe.6G116100 Prunus persica HOM05D005484 ORTHO05D006761 5.6e-65 251.9 173 78.0
Aa31LG1G12880 Aethionema arabicum HOM05D005484 ORTHO05D006761 9.5e-65 251.1 233 65.2
BcaB08g36405 Brassica carinata HOM05D005484 ORTHO05D006761 9.5e-65 251.1 171 77.2
BcaC04g19603 Brassica carinata HOM05D005484 ORTHO05D006761 9.5e-65 251.1 171 77.2
C09p53800 Brassica napus HOM05D005484 ORTHO05D006761 9.5e-65 251.1 171 77.2
BolC9t58255H Brassica oleracea HOM05D005484 ORTHO05D006761 9.5e-65 251.1 171 77.2
AT5G22830 Arabidopsis thaliana HOM05D005484 ORTHO05D006761 1.2e-64 250.8 171 77.2
MD03G1131000 Malus domestica HOM05D005484 ORTHO05D006761 1.2e-64 250.8 227 66.1
Cc01_g10030 Coffea canephora HOM05D005484 ORTHO05D006761 1.6e-64 250.4 173 76.9
FvH4_3g30160 Fragaria vesca HOM05D005484 ORTHO05D006761 1.6e-64 250.4 261 59.4
MD11G1153500 Malus domestica HOM05D005484 ORTHO05D006761 1.6e-64 250.4 286 57.7
Actinidia07200 Actinidia chinensis HOM05D005484 ORTHO05D006761 2.1e-64 250.0 297 57.2
CARHR190740 Cardamine hirsuta HOM05D005484 ORTHO05D006761 2.1e-64 250.0 227 65.2
Lj3g0024733 Lotus japonicus HOM05D005484 ORTHO05D006761 2.1e-64 250.0 272 58.8
HanXRQChr14g0451871 Helianthus annuus HOM05D005484 ORTHO05D006761 2.8e-64 249.6 184 74.5
Psat5g253880 Pisum sativum HOM05D005484 ORTHO05D006761 2.8e-64 249.6 240 62.1
CANSAT64G0117 Cannabis sativa HOM05D005484 ORTHO05D006761 4.7e-64 248.8 285 56.8
CANSAT64G0716 Cannabis sativa HOM05D005484 ORTHO05D006761 4.7e-64 248.8 285 56.8
FAN11G2949 Fragaria x ananassa HOM05D005484 ORTHO05D006761 4.7e-64 248.8 200 71.0
FAN25G3300 Fragaria x ananassa HOM05D005484 ORTHO05D006761 4.7e-64 248.8 261 59.0
Peaxi162Scf00150g00079 Petunia axillaris HOM05D005484 ORTHO05D006761 4.7e-64 248.8 221 67.0
SalBow3G0456 Salvia bowleyana HOM05D005484 ORTHO05D006761 6.2e-64 248.4 280 59.6
Lsat_1_v5_gn_2_96860 Lactuca sativa HOM05D005484 ORTHO05D006761 8.1e-64 248.1 226 65.0
CsaV3_1G014320 Cucumis sativus L. HOM05D005484 ORTHO05D006761 1.1e-63 247.7 280 57.1
EL10Ac9g21044 Beta vulgaris HOM05D005484 ORTHO05D006761 1.4e-63 247.3 174 74.7
Zm00001eb053210 Zea mays HOM05D005484 ORTHO05D006761 1.4e-63 247.3 190 71.1
VMungo1080G0291 Vigna mungo HOM05D005484 ORTHO05D006761 1.8e-63 246.9 276 58.0
Lalb_Chr22g0350511 Lupinus albus HOM05D005484 ORTHO05D006761 2.4e-63 246.5 173 76.3
unitig_22.g6648 Utricularia gibba HOM05D005484 ORTHO05D006761 2.4e-63 246.5 245 61.2
Nitab4.5_0000442g0140 Nicotiana tabacum HOM05D005484 ORTHO05D006761 3.1e-63 246.1 229 64.2
Sed0014392 Sechium edule HOM05D005484 ORTHO05D006761 3.1e-63 246.1 279 57.0
CDE06G0450 Ceratophyllum demersum HOM05D005484 ORTHO05D006761 4.0e-63 245.7 185 70.3
Hma1.2p1_1447F.1_g284000 Hydrangea macrophylla HOM05D005484 ORTHO05D006761 4.0e-63 245.7 238 63.0
TPR.G32384 Trifolium pratense HOM05D005484 ORTHO05D006761 4.0e-63 245.7 233 60.9
Solyc11g066660.3 Solanum lycopersicum HOM05D005484 ORTHO05D006761 5.2e-63 245.4 198 70.7
Sopen11g026390 Solanum pennellii HOM05D005484 ORTHO05D006761 5.2e-63 245.4 198 71.2
ATR0665G031 Amborella trichopoda HOM05D005484 ORTHO05D006761 6.8e-63 245.0 207 67.6
Gohir.D09G086420 Gossypium hirsutum HOM05D005484 ORTHO05D006761 6.8e-63 245.0 273 56.8
Gorai.006G102800 Gossypium raimondii HOM05D005484 ORTHO05D006761 6.8e-63 245.0 273 56.8
Gohir.A13G223600 Gossypium hirsutum HOM05D005484 ORTHO05D006761 8.9e-63 244.6 298 55.0
Oeu026994.1 Olea europaea HOM05D005484 ORTHO05D006761 8.9e-63 244.6 192 72.9
ECA238G0643 Erigeron canadensis HOM05D005484 ORTHO05D006761 1.2e-62 244.2 184 72.3
Carub.0006s2055 Capsella rubella HOM05D005484 ORTHO05D006761 2.0e-62 243.4 282 56.0
CAN.G644.47 Capsicum annuum HOM05D005484 ORTHO05D006761 4.4e-62 242.3 231 64.9
PSO063G3820 Papaver somniferum HOM05D005484 ORTHO05D006761 7.6e-62 241.5 206 66.5
PSO339G5122 Papaver somniferum HOM05D005484 ORTHO05D006761 7.6e-62 241.5 208 65.9
AUR62023974 Chenopodium quinoa HOM05D005484 ORTHO05D006761 1.3e-61 240.7 167 77.2
Gorai.013G259100 Gossypium raimondii HOM05D005484 ORTHO05D006761 1.7e-61 240.4 299 54.2
Gohir.D13G228400 Gossypium hirsutum HOM05D005484 ORTHO05D006761 2.2e-61 240.0 299 54.2
ECA233G3593 Erigeron canadensis HOM05D005484 ORTHO05D006761 3.8e-61 239.2 173 74.0
Lsat_1_v5_gn_6_42460 Lactuca sativa HOM05D005484 ORTHO05D006761 1.1e-60 237.7 173 73.4
AUR62031772 Chenopodium quinoa HOM05D005484 ORTHO05D006761 3.5e-59 232.6 297 55.6
Ah.01g016150 Amaranthus hybridus HOM05D005484 ORTHO05D006761 1.5e-57 227.3 308 52.3
Hma1.2p1_0864F.1_g230060 Hydrangea macrophylla HOM05D005484 ORTHO05D006761 1.6e-56 223.8 224 61.6
Duzib150G1233 Durio zibethinus HOM05D005484 ORTHO05D006761 2.1e-56 223.4 353 46.2
Lj2A998T22 Lonicera japonica HOM05D005484 ORTHO05D006761 2.1e-56 223.4 326 47.5
HanXRQChr02g0055131 Helianthus annuus HOM05D005484 ORTHO05D006761 3.6e-56 222.6 204 62.7
SEGI_15590 Sequoiadendron giganteum HOM05D005484 ORTHO05D006761 1.8e-55 220.3 172 67.4
Sc06g0008870 Simmondsia chinensis HOM05D005484 ORTHO05D006761 2.6e-54 216.5 216 60.6
HPP92_026475 Vanilla planifolia HOM05D005484 ORTHO05D006761 3.9e-50 202.6 167 65.9
MBI01_g19332_MAGBIO Magnolia biondii HOM05D002731 ORTHO05D003073 2.1e-48 196.8 232 53.9
Haze_23498 Corylus avellana HOM05D005484 ORTHO05D006761 2.8e-48 196.4 289 49.5
Mapoly0034s0035 Marchantia polymorpha HOM05D005484 ORTHO05D006761 9.0e-47 191.4 207 56.5
Pp3c25_90 Physcomitrium patens HOM05D005484 ORTHO05D006761 2.6e-46 189.9 173 60.1
Dinv29402 Davidia involucrata HOM05D005484 ORTHO05D006761 2.9e-45 186.4 144 72.2
CsaV3_4G022020 Cucumis sativus L. HOM05D005484 ORTHO05D006761 1.9e-44 183.7 180 61.1
AagrBONN_evm.TU.Sc2ySwM_228.452 Anthoceros agrestis HOM05D005484 ORTHO05D006761 4.2e-44 182.6 200 54.5
Pp3c5_14300 Physcomitrium patens HOM05D005484 ORTHO05D006761 2.5e-41 173.3 174 56.9
Cpa.g.sc47.33 Carica papaya HOM05D005484 ORTHO05D006761 2.4e-39 166.8 115 77.4
Hund07725 Selenicereus undatus HOM05D005484 ORTHO05D006761 6.9e-31 138.7 270 43.3
Oeu044764.1 Olea europaea HOM05D005484 ORTHO05D006761 2.0e-30 137.1 163 55.8
SMO114G0014 Selaginella moellendorffii HOM05D005484 ORTHO05D006761 1.0e-29 134.8 114 62.3
Oeu039852.1 Olea europaea HOM05D005484 ORTHO05D006761 6.7e-26 122.1 87 74.7
arahy.Tifrunner.gnm1.ann1.QN3LZL Arachis hypogaea HOM05D005484 ORTHO05D006761 1.4e-23 114.4 84 69.0
PRCOL_00001328 Prasinoderma coloniale HOM05D005484 ORTHO05D006761 2.6e-22 110.2 170 37.6
PGSC0003DMG401000463 Solanum tuberosum HOM05D005484 ORTHO05D006761 5.5e-20 102.4 242 39.7
HPP92_014217 Vanilla planifolia HOM05D005484 ORTHO05D006761 2.7e-19 100.1 92 62.0
Cpa.g.sc2655.1 Carica papaya HOM05D005484 ORTHO05D006761 3.3e-17 93.2 149 45.6
arahy.Tifrunner.gnm1.ann1.F907EV Arachis hypogaea HOM05D005484 ORTHO05D006761 2.4e-15 87.0 83 60.2
arahy.Tifrunner.gnm1.ann1.3CLD45 Arachis hypogaea HOM05D005484 ORTHO05D006761 1.0e-13 81.6 60 66.7
arahy.Tifrunner.gnm1.ann1.76UAY3 Arachis hypogaea HOM05D005484 ORTHO05D006761 1.0e-13 81.6 60 66.7
arahy.Tifrunner.gnm1.ann1.G5FPRP Arachis hypogaea HOM05D005484 ORTHO05D006761 1.0e-13 81.6 60 66.7
arahy.Tifrunner.gnm1.ann1.RDY6U4 Arachis hypogaea HOM05D005484 ORTHO05D006761 1.0e-13 81.6 60 66.7
MCO16G698 Micromonas commoda HOM05D005484 ORTHO05D006761 1.4e-12 77.8 221 29.4
arahy.Tifrunner.gnm1.ann1.43PCVQ Arachis hypogaea HOM05D005484 ORTHO05D006761 2.5e-12 77.0 55 69.1
arahy.Tifrunner.gnm1.ann1.W9NQ6G Arachis hypogaea HOM05D005484 ORTHO05D006761 5.5e-12 75.9 54 70.4
arahy.Tifrunner.gnm1.ann1.M9ALVS Arachis hypogaea HOM05D000309 ORTHO05D000271 7.2e-12 75.5 119 42.9
HPP92_014216 Vanilla planifolia HOM05D005484 ORTHO05D006761 5.7e-09 65.9 49 61.2
MBI01_g19330_MAGBIO Magnolia biondii HOM05D005484 ORTHO05D006761 7.4e-09 65.5 52 67.3
TPR.G8328 Trifolium pratense HOM05D000470 ORTHO05D000348 6.3e-08 62.4 166 28.9
Lj1g0016160 Lotus japonicus HOM05D000470 ORTHO05D000348 2.4e-07 60.5 172 27.9
CDE09G0788 Ceratophyllum demersum HOM05D002182 ORTHO05D004671 2.0e-06 57.4 68 52.9
Glyma.01G242000 Glycine max HOM05D000470 ORTHO05D000348 4.5e-06 56.2 185 28.6
COL.COLO4_27879 Corchorus olitorius HOM05D000470 ORTHO05D000348 5.9e-06 55.8 151 27.2
Cfa027116 Carpinus fangiana HOM05D005484 ORTHO05D126395 7.7e-06 55.5 161 27.3
Cre03.g168600 Chlamydomonas reinhardtii HOM05D005484 ORTHO05D006761 7.7e-06 55.5 66 39.4
Medtr5g005240 Medicago truncatula HOM05D000470 ORTHO05D000348 7.7e-06 55.5 171 28.7


User provided reference genes

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