Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J00311 Eucalyptus grandis HOM05D006718 ORTHO05D008492 0.0e+00 1228.4 628 100.0
Cfa010452 Carpinus fangiana HOM05D006718 ORTHO05D008492 8.8e-82 308.9 581 39.6
QL04p050382 Quercus lobata HOM05D006718 ORTHO05D008492 1.1e-79 302.0 518 41.1
Haze_03406 Corylus avellana HOM05D006718 ORTHO05D008492 1.4e-71 275.0 590 38.3
Prupe.2G061400 Prunus persica HOM05D006718 ORTHO05D008492 2.0e-70 271.2 550 39.3
PGR044G1203 Punica granatum HOM05D006718 ORTHO05D008492 2.5e-68 264.2 509 40.9
MD07G1054700 Malus domestica HOM05D006718 ORTHO05D008492 8.9e-66 255.8 562 37.4
CiPaw.13G047100 Carya illinoinensis HOM05D006718 ORTHO05D008492 7.0e-63 246.1 491 39.7
Atru.chr12.1182 Acer truncatum HOM05D006718 ORTHO05D008492 1.6e-62 245.0 365 47.1
MD02G1263300 Malus domestica HOM05D006718 ORTHO05D008492 5.0e-61 240.0 549 36.2
Dinv24591 Davidia involucrata HOM05D006718 ORTHO05D008492 1.2e-59 235.3 442 42.1
Manes.07G082900 Manihot esculenta HOM05D006718 ORTHO05D008492 1.1e-58 232.3 499 38.7
ClCG08G008520 Citrullus lanatus HOM05D006718 ORTHO05D008492 4.9e-56 223.4 581 35.6
TWI38G0042 Tripterygium wilfordii HOM05D006718 ORTHO05D008492 4.1e-55 220.3 531 36.0
Gohir.A06G171400 Gossypium hirsutum HOM05D006718 ORTHO05D008492 7.1e-55 219.5 435 39.5
MELO3C019922.2 Cucumis melo HOM05D006718 ORTHO05D008492 9.2e-55 219.2 502 36.5
CsaV3_6G004530 Cucumis sativus L. HOM05D006718 ORTHO05D008492 1.2e-54 218.8 566 35.3
Glyma.14G084400 Glycine max HOM05D006718 ORTHO05D008492 3.5e-54 217.2 569 35.5
Ciclev10015184m.g Citrus clementina HOM05D006718 ORTHO05D008492 6.0e-54 216.5 430 38.4
Thecc.10G129200 Theobroma cacao HOM05D006718 ORTHO05D008492 1.3e-53 215.3 566 36.0
Gohir.D06G179500 Gossypium hirsutum HOM05D006718 ORTHO05D008492 1.7e-53 214.9 432 39.4
Gorai.010G210100 Gossypium raimondii HOM05D006718 ORTHO05D008492 3.9e-53 213.8 432 39.4
Phvul.011G216700 Phaseolus vulgaris HOM05D006718 ORTHO05D008492 2.5e-52 211.1 544 35.5
RcHm_v2.0_Chr3g0490591 Rosa chinensis HOM05D006718 ORTHO05D008492 2.5e-52 211.1 586 36.0
Glyma.17G240500 Glycine max HOM05D006718 ORTHO05D008492 1.8e-50 204.9 553 35.6
Lalb_Chr25g0284721 Lupinus albus HOM05D006718 ORTHO05D008492 2.3e-50 204.5 511 38.0
CANSAT56G0860 Cannabis sativa HOM05D006718 ORTHO05D008492 4.0e-50 203.8 506 36.2
Hund06826 Selenicereus undatus HOM05D006718 ORTHO05D008492 3.4e-49 200.7 537 35.6
FAN23G2020 Fragaria x ananassa HOM05D006718 ORTHO05D008492 4.4e-49 200.3 514 36.8
Sc09g0004890 Simmondsia chinensis HOM05D006718 ORTHO05D008492 4.4e-49 200.3 499 34.1
Potri.010G246500 Populus trichocarpa HOM05D006718 ORTHO05D008492 5.8e-49 199.9 638 32.8
FAN19G2415 Fragaria x ananassa HOM05D006718 ORTHO05D008492 9.9e-49 199.1 534 36.0
Nn2g14019 Nelumbo nucifera HOM05D006718 ORTHO05D008492 9.9e-49 199.1 563 36.6
FAN28G2084 Fragaria x ananassa HOM05D006718 ORTHO05D008492 1.3e-48 198.7 508 36.8
FvH4_1g30390 Fragaria vesca HOM05D006718 ORTHO05D008492 1.7e-48 198.4 534 36.0
TAR369G0954 Trochodendron aralioides HOM05D006718 ORTHO05D008492 6.4e-48 196.4 560 35.9
VMungo0647G0438 Vigna mungo HOM05D006718 ORTHO05D008492 6.4e-48 196.4 500 35.8
AUR62014308 Chenopodium quinoa HOM05D006718 ORTHO05D008492 2.4e-47 194.5 606 34.2
AUR62034103 Chenopodium quinoa HOM05D006718 ORTHO05D008492 1.6e-46 191.8 516 35.9
Ca_03601_v3 Cicer arietinum L. HOM05D006718 ORTHO05D008492 2.1e-46 191.4 521 35.1
Sabra08G0007500 Salix brachista HOM05D006718 ORTHO05D008492 1.0e-45 189.1 618 33.0
Duzib128G0030 Durio zibethinus HOM05D006718 ORTHO05D008492 1.3e-45 188.7 441 36.5
Sed0008467 Sechium edule HOM05D006718 ORTHO05D008492 1.7e-45 188.3 565 34.0
Sabra10G0192200 Salix brachista HOM05D006718 ORTHO05D008492 6.6e-45 186.4 628 31.4
Lj7A493G35 Lonicera japonica HOM05D006718 ORTHO05D008492 7.3e-44 183.0 371 40.4
EL10Ac4g08778 Beta vulgaris HOM05D006718 ORTHO05D008492 2.1e-43 181.4 571 33.5
SGA_v2.0_scaffold196G40987 Striga asiatica HOM05D006718 ORTHO05D008492 2.8e-43 181.0 500 33.8
Migut.O00435 Erythranthe guttata HOM05D006718 ORTHO05D008492 2.6e-41 174.5 554 33.6
AT5G18440 Arabidopsis thaliana HOM05D006718 ORTHO05D008492 7.6e-41 172.9 408 35.8
CSS0042038 Camellia sinensis var. sinensis HOM05D006718 ORTHO05D008492 6.4e-40 169.9 287 43.6
Thhalv10013325m.g Eutrema salsugineum HOM05D006718 ORTHO05D008492 9.3e-39 166.0 451 36.8
MBI15_g36944_MAGBIO Magnolia biondii HOM05D006718 ORTHO05D008492 1.6e-38 165.2 511 33.7
Carub.0006s1670 Capsella rubella HOM05D006718 ORTHO05D008492 4.6e-38 163.7 426 35.0
Potri.008G012250 Populus trichocarpa HOM05D006718 ORTHO05D008492 3.9e-37 160.6 372 37.9
PGSC0003DMG400027524 Solanum tuberosum HOM05D006718 ORTHO05D008492 5.1e-37 160.2 513 32.6
Lj3g0008993 Lotus japonicus HOM05D006718 ORTHO05D008492 6.6e-37 159.8 560 31.8
AL6G29690 Arabidopsis lyrata HOM05D006718 ORTHO05D008492 8.7e-37 159.5 423 32.6
COL.COLO4_28900 Corchorus olitorius HOM05D006718 ORTHO05D008492 8.7e-37 159.5 305 39.3
GSVIVG01027215001 Vitis vinifera HOM05D006718 ORTHO05D008492 1.1e-36 159.1 419 36.3
THA.LOC104811338 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 1.9e-36 158.3 468 33.3
Migut.N01880 Erythranthe guttata HOM05D006718 ORTHO05D008492 2.5e-36 157.9 281 42.0
Ah.06g191200 Amaranthus hybridus HOM05D006718 ORTHO05D008492 3.3e-36 157.5 489 32.7
SalBow4G0879 Salvia bowleyana HOM05D006718 ORTHO05D008492 3.3e-36 157.5 465 31.4
Sopen01g040630 Solanum pennellii HOM05D006718 ORTHO05D008492 5.6e-36 156.8 515 32.8
Sp6g25880 Schrenkiella parvula HOM05D006718 ORTHO05D008492 2.1e-35 154.8 480 33.8
MSTRG.5086 Avicennia marina HOM05D006718 ORTHO05D008492 2.8e-35 154.5 524 32.1
DCAR_006628 Daucus carota HOM05D006718 ORTHO05D008492 3.6e-35 154.1 290 40.0
Solyc01g096920.3 Solanum lycopersicum HOM05D006718 ORTHO05D008492 3.6e-35 154.1 548 32.8
Nitab4.5_0001611g0090 Nicotiana tabacum HOM05D006718 ORTHO05D008492 8.1e-35 152.9 468 32.3
unitig_899.g15585 Utricularia gibba HOM05D006718 ORTHO05D008492 1.8e-34 151.8 221 44.8
Nitab4.5_0005056g0030 Nicotiana tabacum HOM05D006718 ORTHO05D008492 5.3e-34 150.2 463 33.9
Aqoxy1G00086 Aquilegia oxysepala HOM05D006718 ORTHO05D008492 1.2e-33 149.1 568 30.3
PSO384G1654 Papaver somniferum HOM05D006718 ORTHO05D008492 5.8e-33 146.7 503 32.0
Aa31LG11G11170 Aethionema arabicum HOM05D006718 ORTHO05D008492 1.3e-32 145.6 511 31.5
PSO339G3483 Papaver somniferum HOM05D006718 ORTHO05D008492 3.8e-32 144.1 501 31.5
BolC9t58690H Brassica oleracea HOM05D006718 ORTHO05D008492 4.9e-32 143.7 470 31.9
Peaxi162Scf00647g00315 Petunia axillaris HOM05D006718 ORTHO05D008492 4.9e-32 143.7 483 32.9
BcaC04g18692 Brassica carinata HOM05D006718 ORTHO05D008492 6.4e-32 143.3 223 42.6
C09p58250 Brassica napus HOM05D006718 ORTHO05D008492 1.4e-31 142.1 460 32.0
CAN.G134.56 Capsicum annuum HOM05D006718 ORTHO05D008492 1.9e-31 141.7 520 30.6
BcaB08g36679 Brassica carinata HOM05D006718 ORTHO05D008492 2.4e-31 141.4 321 35.5
Medtr2g067220 Medicago truncatula HOM05D006718 ORTHO05D008492 6.0e-30 136.7 554 31.8
Cc02_g32070 Coffea canephora HOM05D006718 ORTHO05D008492 1.7e-29 135.2 444 32.7
ATR0068G071 Amborella trichopoda HOM05D006718 ORTHO05D008492 3.9e-29 134.0 408 33.1
CARHR194580 Cardamine hirsuta HOM05D006718 ORTHO05D008492 6.6e-29 133.3 423 31.4
Cpa.g.sc163.26 Carica papaya HOM05D006718 ORTHO05D008492 1.9e-28 131.7 319 34.8
Rhsim01G0121600 Rhododendron simsii HOM05D006718 ORTHO05D008492 1.9e-28 131.7 598 31.3
HPP92_007508 Vanilla planifolia HOM05D006718 ORTHO05D008492 7.3e-28 129.8 485 32.2
vmacro20846 Vaccinium macrocarpon HOM05D006718 ORTHO05D008492 9.6e-28 129.4 524 31.5
FAN26G3384 Fragaria x ananassa HOM05D006718 ORTHO05D008492 1.3e-27 129.0 471 31.6
TPR.G33809 Trifolium pratense HOM05D006718 ORTHO05D008492 2.1e-27 128.3 555 31.2
Lsat_1_v5_gn_4_139420 Lactuca sativa HOM05D006718 ORTHO05D008492 3.6e-27 127.5 523 31.0
A10p21140 Brassica napus HOM05D006718 ORTHO05D008492 6.2e-27 126.7 414 31.6
HanXRQChr09g0250361 Helianthus annuus HOM05D006718 ORTHO05D008492 6.4e-24 116.7 454 32.4
ECA232G4797 Erigeron canadensis HOM05D006718 ORTHO05D008492 9.3e-23 112.8 415 30.6
Os01g0814000 Oryza sativa ssp. japonica HOM05D006718 ORTHO05D008492 4.6e-22 110.5 228 34.6
CDE04G2801 Ceratophyllum demersum HOM05D001339 ORTHO05D003609 1.8e-21 108.6 231 37.7
BraA10t44177Z Brassica rapa HOM05D006718 ORTHO05D008492 3.9e-21 107.5 473 28.8
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 1.5e-20 105.5 576 29.7
Zm00001eb149940 Zea mays HOM05D006718 ORTHO05D008492 2.1e-19 101.7 239 32.6
A02p04900 Brassica napus HOM05D006718 ORTHO05D008492 1.2e-14 85.9 404 28.5
Mapoly0025s0136 Marchantia polymorpha HOM05D006718 ORTHO05D008492 1.0e-08 66.2 274 27.7
Pp3c27_4140 Physcomitrium patens HOM05D006718 ORTHO05D008492 3.8e-08 64.3 76 48.7
Peaxi162Scf00558g00016 Petunia axillaris HOM05D006718 ORTHO05D008492 5.0e-08 63.9 197 28.9


User provided reference genes

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