Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 0.0e+00 1205.3 609 100.0
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 7.8e-277 956.8 573 86.7
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 6.6e-276 953.7 558 86.9
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 5.3e-257 891.0 558 82.1
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.7e-218 763.1 421 90.5
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 3.0e-175 619.4 560 58.2
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 2.9e-170 602.8 563 58.1
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 4.9e-170 602.1 565 58.1
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 2.1e-168 596.7 566 57.2
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 1.5e-166 590.5 563 56.0
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 4.3e-166 589.0 564 57.1
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 7.3e-166 588.2 567 57.0
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.6e-165 587.0 562 56.2
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 8.1e-165 584.7 563 56.7
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 1.4e-164 583.9 563 56.3
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 1.8e-164 583.6 567 55.9
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 6.9e-164 581.6 570 56.1
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 2.6e-163 579.7 560 56.2
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 9.9e-163 577.8 565 55.2
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 5.4e-161 572.0 560 54.1
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 7.1e-161 571.6 559 54.4
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 9.3e-161 571.2 564 54.4
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 1.2e-160 570.9 559 55.3
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 3.5e-160 569.3 565 55.6
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 4.6e-160 568.9 571 55.2
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 5.6e-158 562.0 574 53.0
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 2.8e-157 559.7 566 55.8
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 3.6e-157 559.3 561 52.8
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 6.2e-157 558.5 569 56.4
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.1e-156 557.8 560 54.3
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 6.9e-156 555.1 565 55.0
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 3.4e-155 552.7 564 54.3
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 9.9e-155 551.2 561 54.2
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 3.8e-154 549.3 494 59.7
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.9e-153 547.0 565 52.4
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 1.9e-153 547.0 573 54.1
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 3.2e-153 546.2 571 54.1
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 4.2e-153 545.8 565 52.2
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 9.3e-153 544.7 565 54.2
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 4.6e-152 542.3 561 53.3
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 3.0e-151 539.7 560 53.8
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 3.9e-151 539.3 531 55.7
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 3.3e-150 536.2 560 52.5
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 1.3e-149 534.3 565 52.7
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 1.6e-149 533.9 564 53.4
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 2.1e-149 533.5 559 51.7
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 2.8e-149 533.1 566 52.3
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 8.1e-149 531.6 561 53.1
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 1.1e-148 531.2 566 52.5
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 1.4e-148 530.8 561 52.2
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 2.4e-148 530.0 567 52.2
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 4.0e-148 529.3 561 52.0
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 6.9e-148 528.5 562 52.1
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 9.0e-148 528.1 569 51.7
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 1.5e-147 527.3 568 51.9
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 2.0e-147 526.9 518 56.2
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 4.5e-147 525.8 567 51.3
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 7.6e-147 525.0 561 52.4
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 1.7e-146 523.9 562 50.9
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.2e-146 523.5 611 49.4
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 2.9e-146 523.1 572 52.4
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 3.8e-146 522.7 567 53.4
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 6.4e-146 521.9 569 51.1
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 1.2e-144 517.7 573 50.3
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 1.2e-144 517.7 568 51.2
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 2.7e-144 516.5 565 50.4
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 1.1e-142 511.1 563 52.0
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 2.5e-142 510.0 564 50.5
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 3.3e-142 509.6 565 49.9
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 3.3e-142 509.6 563 50.1
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 3.7e-141 506.1 534 54.1
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 3.7e-141 506.1 563 49.2
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 4.8e-141 505.8 523 53.7
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 6.2e-141 505.4 567 50.1
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 8.1e-141 505.0 530 54.2
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 9.0e-140 501.5 567 50.3
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 9.0e-140 501.5 564 49.3
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 9.0e-140 501.5 512 54.5
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 1.2e-139 501.1 567 50.3
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 2.0e-139 500.4 419 63.0
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 2.6e-139 500.0 564 50.7
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 3.4e-139 499.6 583 49.1
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 1.3e-138 497.7 561 50.1
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 3.8e-138 496.1 579 49.1
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 1.9e-137 493.8 530 52.5
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 4.2e-137 492.7 549 49.9
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 7.1e-137 491.9 530 51.3
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 4.6e-136 489.2 524 51.9
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 6.0e-136 488.8 567 49.0
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 7.9e-136 488.4 561 49.6
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 1.0e-135 488.0 569 49.0
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 1.3e-135 487.6 578 49.1
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 3.9e-135 486.1 580 49.0
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 8.7e-135 485.0 602 47.3
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.5e-134 484.2 567 48.9
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 2.8e-133 479.9 576 48.4
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 3.7e-133 479.6 478 55.0
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 6.3e-133 478.8 567 48.0
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 8.2e-133 478.4 510 52.2
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 1.1e-132 478.0 564 47.7
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 1.8e-132 477.2 522 51.7
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 2.6e-131 473.4 501 51.3
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.7e-130 470.7 563 47.2
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 2.9e-130 469.9 564 47.7
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 2.9e-130 469.9 564 47.7
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 3.8e-130 469.5 563 48.7
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 6.5e-130 468.8 564 48.0
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 6.5e-130 468.8 521 52.0
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 1.4e-129 467.6 563 47.8
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 1.4e-129 467.6 563 47.8
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 1.9e-129 467.2 562 49.3
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 4.2e-129 466.1 563 47.6
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 2.7e-128 463.4 560 47.7
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 2.3e-127 460.3 552 46.2
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 5.1e-127 459.1 419 54.9
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 1.1e-126 458.0 561 46.7
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 3.3e-126 456.4 589 47.2
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 4.3e-126 456.1 632 45.3
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 4.1e-124 449.5 418 56.5
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.2e-120 438.0 589 44.3
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.0e-119 434.9 615 44.2
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 2.6e-115 420.2 563 44.0
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 2.9e-114 416.8 416 53.1
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 2.5e-113 413.7 477 48.8
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.2e-112 411.4 463 49.0
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.2e-112 411.4 463 49.0
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 1.8e-111 407.5 441 50.8
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 5.2e-111 406.0 462 50.0
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 1.5e-110 404.4 552 44.4
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 9.7e-102 375.2 379 52.8
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 4.5e-99 366.3 385 52.2
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 1.0e-95 355.1 593 38.8
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 8.6e-90 335.5 498 43.0
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 5.4e-84 316.2 578 37.2
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 8.6e-82 308.9 583 35.2
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 2.3e-79 300.8 444 43.0
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 6.4e-69 266.2 564 35.1
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 1.0e-58 232.3 451 36.4
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 7.6e-54 216.1 496 34.7
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 2.8e-48 197.6 161 57.8
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 6.9e-47 193.0 348 37.1
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 1.5e-46 191.8 195 48.2
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 1.8e-31 141.7 240 39.2
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 1.8e-23 115.2 158 37.3
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 1.2e-22 112.5 154 46.1
Oeu025172.2 Olea europaea HOM05D004604 ORTHO05D005744 3.6e-11 74.3 124 42.7
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 8.8e-10 69.7 59 59.3
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 5.7e-09 67.0 39 74.4


User provided reference genes

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