Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 0.0e+00 1288.5 648 100.0
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.3e-298 1029.2 647 82.7
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.2e-284 981.5 655 78.5
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 7.5e-278 960.3 573 86.7
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.1e-227 792.7 433 92.1
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 1.2e-201 707.2 648 59.3
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.1e-199 700.7 648 59.4
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 1.6e-195 686.8 664 58.0
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.3e-192 677.2 649 57.5
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 4.8e-192 675.2 651 57.3
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 3.5e-190 669.1 647 56.9
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 2.3e-189 666.4 652 57.1
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.5e-188 663.7 648 56.3
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 1.9e-188 663.3 652 56.4
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 6.1e-187 658.3 639 56.2
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 1.4e-186 657.1 651 56.5
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 2.3e-186 656.4 641 56.5
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 2.3e-186 656.4 689 54.7
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 2.0e-185 653.3 647 56.0
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 4.4e-185 652.1 654 55.7
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.7e-184 650.2 662 56.0
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 3.1e-183 646.0 645 56.9
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 3.1e-183 646.0 647 54.7
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 4.1e-183 645.6 653 54.5
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 2.0e-182 643.3 650 55.5
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 2.7e-182 642.9 651 55.5
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 5.0e-181 638.6 642 55.5
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 1.1e-180 637.5 658 54.7
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 1.4e-178 630.6 641 53.4
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 1.8e-178 630.2 654 53.8
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 8.9e-178 627.9 656 54.9
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 1.5e-177 627.1 650 54.3
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 2.0e-177 626.7 644 54.7
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 3.4e-177 625.9 636 53.9
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 4.4e-177 625.5 648 54.2
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 6.4e-176 621.7 586 59.7
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 2.4e-175 619.8 659 54.2
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 5.4e-175 618.6 644 54.8
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 9.2e-175 617.8 649 53.3
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 9.2e-175 617.8 658 53.0
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 2.0e-174 616.7 648 54.5
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 3.0e-173 612.8 644 53.1
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 3.9e-173 612.5 630 53.0
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 3.9e-173 612.5 651 53.1
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 8.6e-173 611.3 656 52.1
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 1.1e-172 610.9 653 53.9
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 2.1e-171 606.7 636 53.5
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 2.8e-171 606.3 652 52.6
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 6.2e-171 605.1 652 53.1
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 8.0e-171 604.7 662 52.3
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.8e-170 603.6 630 53.3
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 1.8e-170 603.6 658 52.3
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 5.2e-170 602.1 654 51.5
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 6.8e-170 601.7 658 52.6
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 7.5e-169 598.2 635 52.3
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 7.5e-169 598.2 634 53.0
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 1.7e-168 597.0 660 51.7
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 1.7e-168 597.0 650 53.8
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 2.9e-168 596.3 644 53.0
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 8.3e-168 594.7 652 52.3
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 2.4e-167 593.2 660 50.8
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 2.7e-166 589.7 650 51.4
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 6.0e-166 588.6 664 51.5
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.7e-165 587.0 710 48.9
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 2.3e-165 586.6 640 52.0
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 2.3e-165 586.6 607 55.4
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 3.0e-165 586.3 655 51.5
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 3.9e-165 585.9 670 51.6
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 5.0e-165 585.5 642 51.4
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 8.6e-165 584.7 652 51.5
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 2.5e-164 583.2 500 62.8
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 3.6e-163 579.3 661 51.6
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 4.7e-163 578.9 662 50.8
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 6.8e-162 575.1 649 51.8
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 6.8e-162 575.1 633 52.4
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.6e-161 573.2 621 52.7
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 7.5e-161 571.6 638 50.3
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 7.5e-161 571.6 639 51.0
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 9.9e-161 571.2 649 51.5
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 1.7e-160 570.5 650 49.8
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 3.7e-160 569.3 647 51.6
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.4e-159 567.4 652 50.0
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.6e-158 563.9 649 49.5
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 2.1e-158 563.5 598 54.2
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 3.5e-158 562.8 673 48.1
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 8.6e-157 558.1 649 49.5
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 1.1e-156 557.8 616 52.9
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 2.5e-156 556.6 650 50.6
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 3.3e-156 556.2 685 48.9
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 1.2e-155 554.3 666 49.7
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 6.2e-155 552.0 669 49.6
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 1.4e-154 550.8 624 52.1
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 1.5e-153 547.4 648 50.3
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 1.5e-153 547.4 645 48.4
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 2.6e-153 546.6 647 49.9
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 3.4e-153 546.2 654 49.8
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 4.4e-153 545.8 601 50.6
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 7.6e-153 545.0 650 50.5
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 1.3e-152 544.3 507 56.8
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 1.7e-152 543.9 647 49.1
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 1.7e-152 543.9 647 49.1
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 3.8e-152 542.7 608 53.1
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 1.1e-151 541.2 545 55.2
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 1.2e-150 537.7 646 48.1
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 1.2e-150 537.7 646 48.1
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 3.5e-150 536.2 646 48.0
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 2.3e-149 533.5 626 49.0
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 1.5e-148 530.8 650 47.8
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 3.3e-148 529.6 582 51.4
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 4.7e-147 525.8 609 49.8
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 8.1e-147 525.0 570 50.4
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 8.1e-147 525.0 665 48.1
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 5.2e-146 522.3 652 47.5
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 9.9e-145 518.1 721 45.4
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 9.9e-145 518.1 518 55.0
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.0e-141 508.1 519 54.5
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 3.0e-141 506.5 498 55.4
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 3.9e-141 506.1 671 47.2
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 1.5e-140 504.2 609 47.6
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 3.6e-139 499.6 537 53.1
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 4.5e-137 492.7 530 53.0
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 3.5e-134 483.0 531 50.8
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 4.6e-134 482.6 552 51.8
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 3.9e-133 479.6 638 46.4
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 5.1e-133 479.2 647 44.5
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 2.6e-113 413.7 476 48.7
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 2.5e-111 407.1 484 48.1
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 2.5e-111 407.1 484 48.1
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 8.2e-107 392.1 635 39.8
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 9.1e-106 388.7 511 45.6
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 4.2e-103 379.8 564 41.8
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 9.4e-103 378.6 637 39.6
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 2.1e-102 377.5 644 39.0
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 2.6e-100 370.5 516 44.4
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 7.4e-100 369.0 379 52.8
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 3.6e-94 350.1 647 38.6
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 1.4e-93 348.2 637 38.9
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 4.1e-74 283.5 512 38.1
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 2.1e-70 271.2 564 35.6
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 2.1e-54 218.0 324 42.9
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 6.0e-49 199.9 163 57.7
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 7.3e-47 193.0 349 36.1
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 1.4e-45 188.7 195 47.2
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 3.4e-36 157.5 142 59.9
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 1.6e-25 122.1 158 38.0
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 1.3e-19 102.4 68 69.1
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 2.9e-19 101.3 155 44.5
Oeu025172.2 Olea europaea HOM05D004604 ORTHO05D005744 4.9e-11 73.9 125 42.4
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-07 62.8 39 69.2


User provided reference genes

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