Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J00191 Eucalyptus grandis HOM05D007292 ORTHO05D009084 1.4e-117 426.4 231 100.0
CiPaw.01G300300 Carya illinoinensis HOM05D007292 ORTHO05D009084 1.9e-58 229.9 238 59.7
Thecc.10G013900 Theobroma cacao HOM05D007292 ORTHO05D009084 2.8e-57 226.1 257 54.9
GSVIVG01032790001 Vitis vinifera HOM05D007292 ORTHO05D009084 2.3e-56 223.0 254 55.5
PGR044G1044 Punica granatum HOM05D007292 ORTHO05D009084 3.1e-56 222.6 235 58.3
QL08p063404 Quercus lobata HOM05D007292 ORTHO05D009084 8.9e-56 221.1 236 57.6
Gohir.A05G330800 Gossypium hirsutum HOM05D007292 ORTHO05D009084 2.0e-55 219.9 240 56.7
Duzib114G0074 Durio zibethinus HOM05D007292 ORTHO05D009084 2.6e-55 219.5 250 54.8
TWI53G0916 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 7.5e-55 218.0 235 54.9
Gohir.D04G069400 Gossypium hirsutum HOM05D007292 ORTHO05D009084 2.2e-54 216.5 240 56.7
Gorai.012G078000 Gossypium raimondii HOM05D007292 ORTHO05D009084 2.9e-54 216.1 245 55.9
Manes.07G131600 Manihot esculenta HOM05D007292 ORTHO05D009084 6.4e-54 214.9 252 54.4
Ciclev10032544m.g Citrus clementina HOM05D007292 ORTHO05D009084 8.3e-54 214.5 252 54.8
Dinv10605 Davidia involucrata HOM05D007292 ORTHO05D009084 8.3e-54 214.5 250 53.6
TAR633G2478 Trochodendron aralioides HOM05D007292 ORTHO05D009084 4.1e-53 212.2 256 52.0
TWI09G0172 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 1.2e-52 210.7 258 52.3
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 3.5e-52 209.1 223 55.6
Cfa001300 Carpinus fangiana HOM05D007292 ORTHO05D009084 7.8e-52 208.0 223 56.1
Potri.010G186800 Populus trichocarpa HOM05D007292 ORTHO05D009084 1.7e-51 206.8 240 53.8
Cpa.g.sc19.157 Carica papaya HOM05D007292 ORTHO05D009084 2.3e-51 206.5 254 51.2
Potri.008G070700 Populus trichocarpa HOM05D007292 ORTHO05D009084 1.1e-50 204.1 241 50.6
PGSC0003DMG400027726 Solanum tuberosum HOM05D007292 ORTHO05D009084 1.5e-50 203.8 257 51.0
Actinidia00958 Actinidia chinensis HOM05D007292 ORTHO05D009084 3.6e-49 199.1 251 53.4
Atru.chr12.94 Acer truncatum HOM05D007292 ORTHO05D009084 1.1e-48 197.6 259 52.5
arahy.Tifrunner.gnm1.ann1.RI3S0A Arachis hypogaea HOM05D007292 ORTHO05D009084 1.8e-48 196.8 240 53.8
arahy.Tifrunner.gnm1.ann1.W7USAB Arachis hypogaea HOM05D007292 ORTHO05D009084 2.4e-48 196.4 204 59.3
Sopen03g026090 Solanum pennellii HOM05D007292 ORTHO05D009084 2.4e-48 196.4 251 49.8
Lalb_Chr08g0231651 Lupinus albus HOM05D007292 ORTHO05D009084 3.1e-48 196.1 224 56.2
MELO3C018364.2 Cucumis melo HOM05D007292 ORTHO05D009084 3.4e-47 192.6 174 64.9
CsaV3_5G010290 Cucumis sativus L. HOM05D007292 ORTHO05D009084 4.4e-47 192.2 258 50.4
Nitab4.5_0002701g0020 Nicotiana tabacum HOM05D007292 ORTHO05D009084 2.2e-46 189.9 246 50.4
CANSAT56G1912 Cannabis sativa HOM05D007292 ORTHO05D009084 2.9e-46 189.5 246 52.4
Solyc03g095990.1 Solanum lycopersicum HOM05D007292 ORTHO05D009084 3.8e-46 189.1 202 54.5
Ah.16g103670 Amaranthus hybridus HOM05D007292 ORTHO05D009084 8.4e-46 188.0 229 52.4
Cc08_g07220 Coffea canephora HOM05D007292 ORTHO05D009084 1.4e-45 187.2 234 51.7
Lj6g0005846 Lotus japonicus HOM05D007292 ORTHO05D009084 1.4e-45 187.2 242 51.7
Actinidia13950 Actinidia chinensis HOM05D007292 ORTHO05D009084 2.4e-45 186.4 232 51.3
Prupe.2G252500 Prunus persica HOM05D007292 ORTHO05D009084 4.2e-45 185.7 258 48.8
Hund13879 Selenicereus undatus HOM05D007292 ORTHO05D009084 5.4e-45 185.3 224 53.6
AUR62022909 Chenopodium quinoa HOM05D007292 ORTHO05D009084 7.1e-45 184.9 182 61.5
Peaxi162Scf00484g00003 Petunia axillaris HOM05D007292 ORTHO05D009084 9.2e-45 184.5 177 58.2
Sabra08G0052000 Salix brachista HOM05D007292 ORTHO05D009084 9.2e-45 184.5 206 51.5
Nitab4.5_0000487g0050 Nicotiana tabacum HOM05D007292 ORTHO05D009084 1.6e-44 183.7 230 50.0
EL10Ac2g04856 Beta vulgaris HOM05D007292 ORTHO05D009084 3.5e-44 182.6 180 58.3
Sed0024586 Sechium edule HOM05D007292 ORTHO05D009084 7.8e-44 181.4 255 50.2
vmacro10031 Vaccinium macrocarpon HOM05D007292 ORTHO05D009084 7.8e-44 181.4 245 50.2
CSS0010989 Camellia sinensis var. sinensis HOM05D007292 ORTHO05D009084 1.3e-43 180.6 255 51.0
ClCG07G004350 Citrullus lanatus HOM05D007292 ORTHO05D009084 2.3e-43 179.9 247 50.6
TAR636G1797 Trochodendron aralioides HOM05D007292 ORTHO05D009084 2.3e-43 179.9 251 48.6
Rhsim09G0178500 Rhododendron simsii HOM05D007292 ORTHO05D009084 1.5e-42 177.2 193 53.9
Glyma.18G025900 Glycine max HOM05D007292 ORTHO05D009084 1.9e-42 176.8 256 48.0
Medtr3g070960 Medicago truncatula HOM05D007292 ORTHO05D009084 1.9e-42 176.8 236 48.3
MD01G1154900 Malus domestica HOM05D007292 ORTHO05D009084 7.3e-42 174.9 203 54.2
Glyma.11G231200 Glycine max HOM05D007292 ORTHO05D009084 1.2e-41 174.1 255 46.7
Lsat_1_v5_gn_2_124081 Lactuca sativa HOM05D007292 ORTHO05D009084 1.2e-41 174.1 236 49.2
Thhalv10006239m.g Eutrema salsugineum HOM05D007292 ORTHO05D009084 4.7e-41 172.2 236 48.3
SalBow5G4600 Salvia bowleyana HOM05D007292 ORTHO05D009084 6.2e-41 171.8 234 47.9
Aa31LG10G10950 Aethionema arabicum HOM05D007292 ORTHO05D009084 1.4e-40 170.6 238 51.3
RcHm_v2.0_Chr1g0370551 Rosa chinensis HOM05D007292 ORTHO05D009084 1.4e-40 170.6 263 46.0
Sc10g0002470 Simmondsia chinensis HOM05D007292 ORTHO05D009084 1.4e-40 170.6 211 48.8
Hma1.2p1_0145F.1_g065370 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 1.8e-40 170.2 105 81.0
Hma1.2p1_2705F.1_g327175 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 1.8e-40 170.2 105 81.0
VMungo1383G3483 Vigna mungo HOM05D001399 ORTHO05D001670 1.8e-40 170.2 254 44.9
Aqoxy6G01833 Aquilegia oxysepala HOM05D007292 ORTHO05D009084 2.4e-40 169.9 227 48.5
ATR0681G254 Amborella trichopoda HOM05D007292 ORTHO05D009084 9.0e-40 167.9 197 53.8
MD07G1224000 Malus domestica HOM05D007292 ORTHO05D009084 1.5e-39 167.2 111 75.7
Sp5g06520 Schrenkiella parvula HOM05D007292 ORTHO05D009084 3.4e-39 166.0 236 47.5
FAN01G0766 Fragaria x ananassa HOM05D007292 ORTHO05D009084 4.4e-39 165.6 250 47.6
THA.LOC104824327 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 4.4e-39 165.6 240 47.9
Carub.0005s2275 Capsella rubella HOM05D007292 ORTHO05D009084 5.8e-39 165.2 233 50.2
CARHR166090 Cardamine hirsuta HOM05D007292 ORTHO05D009084 5.8e-39 165.2 233 48.1
FAN10G1098 Fragaria x ananassa HOM05D007292 ORTHO05D009084 9.9e-39 164.5 263 44.9
FvH4_7g24710 Fragaria vesca HOM05D007292 ORTHO05D009084 1.3e-38 164.1 263 44.9
FAN06G1000 Fragaria x ananassa HOM05D007292 ORTHO05D009084 1.3e-38 164.1 263 44.9
SalBow5G0252 Salvia bowleyana HOM05D007292 ORTHO05D009084 1.3e-38 164.1 234 47.0
BcaB01g00041 Brassica carinata HOM05D007292 ORTHO05D009084 1.7e-38 163.7 149 63.1
AT3G56010 Arabidopsis thaliana HOM05D007292 ORTHO05D009084 2.9e-38 162.9 154 61.0
A09p48960 Brassica napus HOM05D007292 ORTHO05D009084 4.9e-38 162.2 114 74.6
C04p36460 Brassica napus HOM05D007292 ORTHO05D009084 4.9e-38 162.2 114 74.6
C08p31330 Brassica napus HOM05D007292 ORTHO05D009084 4.9e-38 162.2 114 74.6
BolC4t25149H Brassica oleracea HOM05D007292 ORTHO05D009084 4.9e-38 162.2 114 74.6
BolC8t50754H Brassica oleracea HOM05D007292 ORTHO05D009084 4.9e-38 162.2 114 74.6
BraA09t40351Z Brassica rapa HOM05D007292 ORTHO05D009084 4.9e-38 162.2 114 74.6
BcaC02g09799 Brassica carinata HOM05D007292 ORTHO05D009084 6.4e-38 161.8 114 74.6
Phvul.001G244400 Phaseolus vulgaris HOM05D007292 ORTHO05D009084 6.4e-38 161.8 253 45.5
BraA04t16126Z Brassica rapa HOM05D007292 ORTHO05D009084 1.1e-37 161.0 143 62.9
Migut.F01485 Erythranthe guttata HOM05D007292 ORTHO05D009084 1.1e-37 161.0 230 44.8
AL5G37290 Arabidopsis lyrata HOM05D007292 ORTHO05D009084 1.4e-37 160.6 146 63.0
TPR.G11203 Trifolium pratense HOM05D007292 ORTHO05D009084 5.4e-37 158.7 240 45.4
THA.LOC104811239 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 2.1e-36 156.8 238 46.6
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 1.0e-35 154.5 214 47.7
Psat5g129440 Pisum sativum HOM05D007292 ORTHO05D009084 1.0e-35 154.5 237 45.6
HanXRQChr14g0459531 Helianthus annuus HOM05D007292 ORTHO05D009084 5.1e-35 152.1 130 66.9
DCAR_011829 Daucus carota HOM05D007292 ORTHO05D009084 6.6e-35 151.8 120 69.2
A04p04080 Brassica napus HOM05D007292 ORTHO05D009084 8.7e-35 151.4 162 55.6
PSO384G0417 Papaver somniferum HOM05D007292 ORTHO05D009084 1.9e-34 150.2 258 45.0
Ca_15135_v3 Cicer arietinum L. HOM05D007292 ORTHO05D009084 7.3e-34 148.3 251 43.0
ECA238G0254 Erigeron canadensis HOM05D007292 ORTHO05D009084 9.6e-34 147.9 186 53.2
Sabra10G0144000 Salix brachista HOM05D007292 ORTHO05D009084 3.6e-33 146.0 161 55.3
Hma1.2p1_2705F.1_g327170 Hydrangea macrophylla HOM05D001399 ORTHO05D001670 1.8e-32 143.7 164 56.1
Os03g0293100 Oryza sativa ssp. japonica HOM05D007292 ORTHO05D009084 4.9e-30 135.6 139 58.3
Zm00001eb013500 Zea mays HOM05D007292 ORTHO05D009084 4.9e-30 135.6 160 54.4
Nn2g13181 Nelumbo nucifera HOM05D007292 ORTHO05D009084 1.4e-29 134.0 220 45.0
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 1.0e-27 127.9 155 51.0
BcaB02g08388 Brassica carinata HOM05D007292 ORTHO05D009084 5.6e-26 122.1 83 72.3
SGA_v2.0_scaffold378G50330 Striga asiatica HOM05D007292 ORTHO05D009084 1.3e-22 110.9 167 45.5
CDE04G1468 Ceratophyllum demersum HOM05D000652 ORTHO05D009084 7.1e-21 105.1 199 38.2
SEGI_20884 Sequoiadendron giganteum HOM05D007292 ORTHO05D009084 1.5e-15 87.4 186 38.7
AagrBONN_evm.TU.Sc2ySwM_344.666 Anthoceros agrestis HOM05D007292 ORTHO05D009084 1.4e-08 64.3 118 38.1
Lsat_1_v5_gn_7_113640 Lactuca sativa HOM05D007823 ORTHO05D000174 2.0e-07 60.5 64 54.7
Mapoly0147s0009 Marchantia polymorpha HOM05D007292 ORTHO05D009084 2.2e-06 57.0 86 40.7
Pp3c10_22900 Physcomitrium patens HOM05D033432 ORTHO05D009084 8.5e-06 55.1 122 38.5


User provided reference genes

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