Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 0.0e+00 1525.0 736 100.0
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 1.0e-270 936.8 708 64.3
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 1.5e-266 922.9 747 61.7
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 4.4e-266 921.4 716 62.8
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 3.6e-260 901.7 742 60.1
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 1.8e-259 899.4 738 59.9
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 1.3e-257 893.3 744 59.9
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 3.7e-257 891.7 742 58.2
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 8.3e-257 890.6 706 60.9
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.9e-256 889.4 730 59.3
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 5.4e-256 887.9 709 60.9
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 7.1e-256 887.5 743 59.0
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 6.0e-255 884.4 744 58.7
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 1.0e-254 883.6 707 61.5
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 6.6e-254 880.9 721 59.1
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 1.5e-253 879.8 696 61.9
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 7.3e-253 877.5 700 60.0
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 7.3e-253 877.5 700 60.0
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 7.3e-253 877.5 735 59.3
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 1.6e-252 876.3 732 59.7
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 4.0e-251 871.7 699 60.9
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 5.2e-251 871.3 722 60.4
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 1.2e-250 870.2 734 58.3
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 3.4e-250 868.6 731 58.3
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 3.4e-250 868.6 734 58.2
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 7.6e-250 867.5 741 57.4
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 7.6e-250 867.5 735 59.6
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 9.9e-250 867.1 739 57.8
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 1.3e-249 866.7 710 59.6
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 2.2e-249 865.9 727 59.1
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 4.9e-249 864.8 739 57.6
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 8.4e-249 864.0 749 57.1
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 1.4e-248 863.2 746 57.1
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 1.4e-248 863.2 731 58.5
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 3.2e-248 862.1 755 57.4
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 7.1e-248 860.9 744 57.4
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 2.1e-247 859.4 708 59.7
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 6.0e-247 857.8 693 60.6
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 7.8e-247 857.4 738 59.3
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 7.8e-247 857.4 759 57.0
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 1.0e-246 857.1 700 59.4
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.0e-246 857.1 740 58.5
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 1.3e-246 856.7 698 60.5
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 3.9e-246 855.1 728 57.0
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 8.6e-246 854.0 699 60.2
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.5e-245 852.4 699 60.2
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 9.6e-245 850.5 689 61.2
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.6e-244 848.6 699 59.5
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 6.2e-244 847.8 729 57.6
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.8e-243 846.3 738 58.8
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 8.9e-243 844.0 691 60.2
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.0e-242 842.8 698 58.9
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.0e-242 842.8 757 56.7
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 2.0e-242 842.8 699 59.7
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 2.2e-241 839.3 706 57.8
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 2.9e-241 839.0 625 64.0
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 3.8e-241 838.6 723 57.8
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 6.4e-241 837.8 732 58.2
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 6.4e-241 837.8 727 58.2
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.4e-240 835.9 731 57.3
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 3.2e-240 835.5 702 59.4
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 3.2e-240 835.5 737 57.8
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 7.1e-240 834.3 732 57.2
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 1.2e-239 833.6 752 56.2
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 3.3e-237 825.5 703 58.3
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 3.3e-237 825.5 696 59.5
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 2.1e-236 822.8 700 56.6
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 4.8e-236 821.6 694 59.4
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 9.0e-235 817.4 697 58.7
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 3.4e-234 815.5 735 56.6
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 4.4e-234 815.1 699 57.9
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 6.4e-233 811.2 699 56.7
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 3.0e-230 802.4 614 64.2
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 2.1e-228 796.2 735 55.5
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 3.6e-228 795.4 701 55.9
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 2.6e-226 789.3 716 54.9
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.1e-224 783.9 695 54.0
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 7.1e-224 781.2 701 53.8
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 2.7e-223 779.2 647 59.5
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.9e-221 773.1 689 52.7
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 7.4e-221 771.2 890 48.0
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 2.8e-220 769.2 714 51.7
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 4.8e-220 768.5 692 52.7
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 1.1e-219 767.3 688 53.5
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 1.8e-219 766.5 692 53.2
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 4.0e-219 765.4 690 52.9
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 6.9e-219 764.6 691 52.8
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 1.5e-218 763.5 691 52.7
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 3.4e-218 762.3 691 52.7
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 3.4e-218 762.3 691 52.7
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.0e-217 760.8 711 52.6
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 2.5e-216 756.1 688 53.6
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 5.5e-216 755.0 696 54.9
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 7.1e-216 754.6 687 53.1
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 1.0e-214 750.7 642 58.1
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 1.1e-213 747.3 726 50.6
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.9e-213 746.5 726 54.1
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 2.5e-213 746.1 692 51.9
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 4.3e-213 745.3 699 55.8
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 5.7e-213 745.0 714 53.6
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 6.3e-212 741.5 693 51.9
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 1.4e-211 740.3 612 59.2
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 4.1e-211 738.8 690 52.3
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 5.3e-211 738.4 708 52.8
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 2.0e-210 736.5 703 52.1
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 4.5e-210 735.3 689 52.5
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 5.0e-209 731.9 714 51.5
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 6.5e-209 731.5 693 51.7
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 2.7e-207 726.1 779 50.8
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 4.6e-207 725.3 759 51.0
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.9e-205 719.9 695 49.8
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 2.5e-205 719.5 708 51.7
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 1.6e-204 716.8 702 50.4
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.5e-202 710.3 703 51.4
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 7.2e-200 701.4 713 53.4
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 1.2e-199 700.7 715 52.2
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 8.8e-198 694.5 686 53.4
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 1.3e-196 690.6 791 46.0
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 8.2e-196 688.0 557 61.6
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 3.1e-195 686.0 699 52.6
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 2.0e-194 683.3 709 51.3
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 3.4e-194 682.6 667 50.5
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 2.2e-193 679.9 588 55.8
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 9.4e-184 647.9 692 47.5
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.3e-182 643.3 709 48.4
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 2.0e-178 630.2 551 56.3
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.2e-177 626.7 715 46.3
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 1.5e-173 614.0 706 46.7
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 1.6e-167 594.0 699 45.8
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 2.1e-167 593.6 583 53.2
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 3.0e-166 589.7 739 45.3
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 2.4e-139 500.4 360 63.9
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 2.3e-137 493.8 568 45.6
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 1.3e-132 478.0 447 50.6
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 7.8e-122 442.2 412 53.6
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 3.9e-113 413.3 313 61.0
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 7.6e-109 399.1 420 49.0
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 7.6e-101 372.5 313 53.7
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 4.9e-100 369.8 214 78.5
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 1.1e-96 358.6 416 46.9
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 5.7e-96 356.3 462 41.3
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 5.3e-94 349.7 312 51.6
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 1.5e-93 348.2 594 35.5
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 3.0e-81 307.4 572 33.9
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 8.5e-76 289.3 349 46.1
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 5.5e-75 286.6 599 31.1
Glyma.02G262200 Glycine max HOM05D004070 ORTHO05D004904 4.8e-63 246.9 184 63.0
BraA01t04205Z Brassica rapa HOM05D004070 ORTHO05D004904 3.6e-58 230.7 164 63.4
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 2.3e-57 228.0 152 71.7
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.9e-52 211.1 219 49.3
SGA_v2.0_scaffold395G50723 Striga asiatica HOM05D004070 ORTHO05D004904 1.2e-48 199.1 131 67.9
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 1.8e-46 191.8 233 44.2
Cpa.g.sc19.132 Carica papaya HOM05D004070 ORTHO05D004904 9.2e-46 189.5 246 45.1
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 5.2e-41 173.7 128 60.2
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 4.9e-39 167.2 396 29.3
BcaB04g21152 Brassica carinata HOM05D004070 ORTHO05D004904 1.8e-38 165.2 99 73.7
BcaB04g21155 Brassica carinata HOM05D004070 ORTHO05D004904 1.8e-38 165.2 99 73.7
BcaB04g21156 Brassica carinata HOM05D004070 ORTHO05D004904 1.8e-38 165.2 99 73.7
Sopen01g021300 Solanum pennellii HOM05D004070 ORTHO05D004904 2.0e-37 161.8 214 43.0
Atru.chr12.101 Acer truncatum HOM05D004070 ORTHO05D004904 3.3e-35 154.5 178 49.4
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 2.0e-32 145.2 171 45.0
Dinv21778 Davidia involucrata HOM05D004070 ORTHO05D004904 3.0e-28 131.3 298 32.9
BraA01t04203Z Brassica rapa HOM05D000053 ORTHO05D000035 2.0e-24 118.6 243 30.5
BolC1t05337H Brassica oleracea HOM05D000053 ORTHO05D000035 1.9e-22 112.1 247 27.9
Sabra08G0054200 Salix brachista HOM05D004070 ORTHO05D004904 1.9e-19 102.1 232 31.9
arahy.Tifrunner.gnm1.ann1.JYP4ZT Arachis hypogaea HOM05D004070 ORTHO05D004904 5.6e-19 100.5 152 39.5
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 8.1e-18 96.7 59 72.9
CsaV3_5G010480 Cucumis sativus L. HOM05D004070 ORTHO05D004904 8.9e-17 93.2 207 31.9
arahy.Tifrunner.gnm1.ann1.N2R911 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.4e-16 91.3 78 57.7
Potri.008G072901 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.5e-11 75.1 117 36.8
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 3.3e-11 74.7 52 63.5
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 1.2e-10 72.8 43 69.8
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 1.2e-10 72.8 43 69.8


User provided reference genes

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