Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02796 Eucalyptus grandis HOM05D006009 ORTHO05D007389 0.0e+00 1286.6 720 100.0
Cfa004445 Carpinus fangiana HOM05D006009 ORTHO05D007389 2.7e-268 928.7 725 72.3
QL02p103325 Quercus lobata HOM05D006009 ORTHO05D007389 2.8e-265 918.7 724 70.7
PGR142G3497 Punica granatum HOM05D006009 ORTHO05D007389 3.1e-264 915.2 733 71.4
Dinv29632 Davidia involucrata HOM05D006009 ORTHO05D007389 6.4e-262 907.5 728 71.6
Thecc.06G017900 Theobroma cacao HOM05D006009 ORTHO05D007389 1.9e-261 906.0 726 70.0
Duzib160G0440 Durio zibethinus HOM05D006009 ORTHO05D007389 3.9e-259 898.3 726 69.4
Atru.chr6.240 Acer truncatum HOM05D006009 ORTHO05D007389 9.6e-258 893.6 733 69.6
Haze_09985 Corylus avellana HOM05D006009 ORTHO05D007389 3.1e-256 888.6 812 64.0
CiPaw.05G001600 Carya illinoinensis HOM05D006009 ORTHO05D007389 2.9e-254 882.1 725 69.8
Manes.10G106700 Manihot esculenta HOM05D006009 ORTHO05D007389 1.2e-247 860.1 725 67.4
CSS0016468 Camellia sinensis var. sinensis HOM05D006009 ORTHO05D007389 3.8e-246 855.1 728 67.9
RcHm_v2.0_Chr7g0219751 Rosa chinensis HOM05D006009 ORTHO05D007389 7.2e-245 850.9 727 66.6
COL.COLO4_31132 Corchorus olitorius HOM05D006009 ORTHO05D007389 9.3e-245 850.5 696 68.4
FvH4_5g27851 Fragaria vesca HOM05D006009 ORTHO05D007389 2.1e-244 849.4 726 66.8
Gohir.D06G150100 Gossypium hirsutum HOM05D006009 ORTHO05D007389 6.1e-244 847.8 726 66.5
Ciclev10000419m.g Citrus clementina HOM05D006009 ORTHO05D007389 7.4e-242 840.9 728 67.2
Gorai.010G175200 Gossypium raimondii HOM05D006009 ORTHO05D007389 1.4e-240 836.6 727 66.3
Actinidia00150 Actinidia chinensis HOM05D006009 ORTHO05D007389 1.3e-238 830.1 728 65.4
TAR628G0644 Trochodendron aralioides HOM05D006009 ORTHO05D007389 5.0e-238 828.2 729 66.9
Ca_13530_v3 Cicer arietinum L. HOM05D006009 ORTHO05D007389 6.5e-238 827.8 721 65.5
TWI59G1011 Tripterygium wilfordii HOM05D006009 ORTHO05D007389 8.5e-238 827.4 725 65.2
MD08G1248100 Malus domestica HOM05D006009 ORTHO05D007389 6.1e-236 821.2 726 65.7
Lsat_1_v5_gn_5_104280 Lactuca sativa HOM05D006009 ORTHO05D007389 1.0e-235 820.5 724 64.6
Solyc01g103040.4 Solanum lycopersicum HOM05D006009 ORTHO05D007389 2.3e-235 819.3 725 65.0
Nitab4.5_0002261g0040 Nicotiana tabacum HOM05D006009 ORTHO05D007389 3.0e-235 818.9 729 64.9
Sabra03G0000300 Salix brachista HOM05D006009 ORTHO05D007389 5.1e-235 818.1 732 65.0
Rhsim11G0117900 Rhododendron simsii HOM05D006009 ORTHO05D007389 1.1e-234 817.0 754 63.7
TPR.G5949 Trifolium pratense HOM05D006009 ORTHO05D007389 3.3e-234 815.5 720 65.3
Psat4g001000 Pisum sativum HOM05D006009 ORTHO05D007389 4.4e-234 815.1 722 64.7
Hma1.2p1_0052F.1_g030000 Hydrangea macrophylla HOM05D006009 ORTHO05D007389 7.4e-234 814.3 709 67.0
MD15G1442900 Malus domestica HOM05D006009 ORTHO05D007389 4.8e-233 811.6 723 65.1
CsaV3_5G037180 Cucumis sativus L. HOM05D006009 ORTHO05D007389 6.3e-233 811.2 728 64.0
Potri.003G000900 Populus trichocarpa HOM05D006009 ORTHO05D007389 1.4e-232 810.1 732 63.7
MELO3C022930.2 Cucumis melo HOM05D006009 ORTHO05D007389 1.5e-231 806.6 728 63.7
arahy.Tifrunner.gnm1.ann1.AUD1A6 Arachis hypogaea HOM05D006009 ORTHO05D007389 4.5e-231 805.1 725 63.3
Nitab4.5_0005110g0010 Nicotiana tabacum HOM05D006009 ORTHO05D007389 4.5e-231 805.1 747 63.1
arahy.Tifrunner.gnm1.ann1.WHZ4K1 Arachis hypogaea HOM05D006009 ORTHO05D007389 5.9e-231 804.7 725 63.3
Prupe.1G585300 Prunus persica HOM05D006009 ORTHO05D007389 1.7e-230 803.1 672 68.2
Sopen01g045450 Solanum pennellii HOM05D006009 ORTHO05D007389 1.4e-229 800.0 725 64.1
Medtr4g134640 Medicago truncatula HOM05D006009 ORTHO05D007389 5.5e-229 798.1 721 64.2
SGA_v2.0_scaffold131G34411 Striga asiatica HOM05D006009 ORTHO05D007389 5.5e-229 798.1 733 63.3
THA.LOC104806651 Tarenaya hassleriana HOM05D006009 ORTHO05D007389 9.4e-229 797.3 730 62.7
Lj4g0014586 Lotus japonicus HOM05D006009 ORTHO05D007389 1.6e-228 796.6 725 64.0
ClCG11G000290 Citrullus lanatus HOM05D006009 ORTHO05D007389 3.9e-227 792.0 728 63.3
Sc03g0005770 Simmondsia chinensis HOM05D006009 ORTHO05D007389 4.4e-226 788.5 727 62.6
Glyma.17G001700 Glycine max HOM05D006009 ORTHO05D007389 2.2e-225 786.2 723 63.6
Thhalv10012797m.g Eutrema salsugineum HOM05D006009 ORTHO05D007389 4.8e-225 785.0 723 60.9
Peaxi162Scf00011g01924 Petunia axillaris HOM05D006009 ORTHO05D007389 6.3e-225 784.6 728 63.6
Cc02_g23590 Coffea canephora HOM05D006009 ORTHO05D007389 4.1e-224 781.9 730 61.8
Sp6g11340 Schrenkiella parvula HOM05D006009 ORTHO05D007389 7.0e-224 781.2 723 60.7
HanXRQChr10g0301411 Helianthus annuus HOM05D006009 ORTHO05D007389 2.6e-223 779.2 724 62.8
AL8G23820 Arabidopsis lyrata HOM05D006009 ORTHO05D007389 1.0e-222 777.3 728 60.6
AT5G49880 Arabidopsis thaliana HOM05D006009 ORTHO05D007389 1.0e-222 777.3 728 61.1
Phvul.003G076200 Phaseolus vulgaris HOM05D006009 ORTHO05D007389 2.2e-222 776.2 691 64.3
Carub.0008s0974 Capsella rubella HOM05D006009 ORTHO05D007389 2.5e-221 772.7 724 60.4
CARHR258850 Cardamine hirsuta HOM05D006009 ORTHO05D007389 3.2e-221 772.3 724 61.0
BcaB08g35360 Brassica carinata HOM05D006009 ORTHO05D007389 1.6e-220 770.0 723 60.7
Lalb_Chr12g0195841 Lupinus albus HOM05D006009 ORTHO05D007389 1.6e-220 770.0 723 62.5
PSO017G1873 Papaver somniferum HOM05D006009 ORTHO05D007389 2.7e-220 769.2 727 60.9
BraSC37t46134Z Brassica rapa HOM05D006009 ORTHO05D007389 1.7e-217 760.0 725 60.7
MBI03_g05191_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 2.2e-217 759.6 727 61.2
ECA234G2369 Erigeron canadensis HOM05D006009 ORTHO05D007389 2.8e-217 759.2 714 61.2
MSTRG.16468 Avicennia marina HOM05D006009 ORTHO05D007389 8.2e-217 757.7 700 62.3
FAN08G0569 Fragaria x ananassa HOM05D006009 ORTHO05D007389 1.2e-215 753.8 797 58.5
Aqoxy6G00035 Aquilegia oxysepala HOM05D006009 ORTHO05D007389 2.2e-214 749.6 741 58.7
A10p08680 Brassica napus HOM05D006009 ORTHO05D007389 6.5e-214 748.0 725 60.0
Lj5C283T7 Lonicera japonica HOM05D006009 ORTHO05D007389 3.2e-213 745.7 717 63.0
Migut.B00722 Erythranthe guttata HOM05D006009 ORTHO05D007389 3.6e-212 742.3 735 60.3
BcaC04g20834 Brassica carinata HOM05D006009 ORTHO05D007389 5.2e-211 738.4 723 59.5
Glyma.07G272700 Glycine max HOM05D006009 ORTHO05D007389 1.5e-210 736.9 694 62.8
vmacro01680 Vaccinium macrocarpon HOM05D006009 ORTHO05D007389 7.5e-210 734.6 814 56.4
C09p38660 Brassica napus HOM05D006009 ORTHO05D007389 2.4e-208 729.6 725 59.3
BolC9t56722H Brassica oleracea HOM05D006009 ORTHO05D007389 2.4e-208 729.6 725 59.3
Nn5g27199 Nelumbo nucifera HOM05D006009 ORTHO05D007389 3.1e-208 729.2 725 62.3
Gohir.A06G144400 Gossypium hirsutum HOM05D006009 ORTHO05D007389 4.7e-204 715.3 726 59.6
Aa31sc62G20 Aethionema arabicum HOM05D006009 ORTHO05D007389 3.7e-201 705.7 724 56.8
FAN04G2183 Fragaria x ananassa HOM05D006009 ORTHO05D007389 8.3e-201 704.5 662 63.4
DCAR_001725 Daucus carota HOM05D006009 ORTHO05D007389 1.8e-200 703.4 696 59.6
Potri.004G228900 Populus trichocarpa HOM05D006009 ORTHO05D007389 3.5e-199 699.1 728 59.3
PSO170G2218 Papaver somniferum HOM05D006009 ORTHO05D007389 7.8e-199 698.0 699 58.9
Ah.03g136790 Amaranthus hybridus HOM05D006009 ORTHO05D007389 4.3e-197 692.2 722 57.3
AUR62042641 Chenopodium quinoa HOM05D006009 ORTHO05D007389 2.6e-194 682.9 747 55.7
unitig_8.g4550 Utricularia gibba HOM05D006009 ORTHO05D007389 1.5e-186 657.1 668 57.2
ATR1089G153 Amborella trichopoda HOM05D006009 ORTHO05D007389 4.9e-185 652.1 733 54.8
AUR62032470 Chenopodium quinoa HOM05D006009 ORTHO05D007389 1.5e-181 640.6 727 53.9
EL10Ac6g13997 Beta vulgaris HOM05D006009 ORTHO05D007389 7.3e-181 638.3 777 50.7
Os01g0877300 Oryza sativa ssp. japonica HOM05D006009 ORTHO05D007389 8.4e-169 598.2 725 51.6
Oeu043610.2 Olea europaea HOM05D006009 ORTHO05D007389 3.0e-166 589.7 674 54.0
CANSAT01G0444 Cannabis sativa HOM05D006009 ORTHO05D007389 1.9e-165 587.0 594 59.6
HPP92_003614 Vanilla planifolia HOM05D006009 ORTHO05D007389 4.3e-157 559.3 727 50.1
CDE05G2940 Ceratophyllum demersum HOM05D006009 ORTHO05D007389 2.1e-148 530.4 577 55.5
FAN18G4220 Fragaria x ananassa HOM05D006009 ORTHO05D007389 1.4e-136 491.1 553 55.5
Manes.10G107000 Manihot esculenta HOM05D006009 ORTHO05D007389 6.3e-132 475.7 424 65.6
Cpa.g.sc173.18 Carica papaya HOM05D006009 ORTHO05D007389 5.9e-130 469.2 359 71.9
GSVIVG01023148001 Vitis vinifera HOM05D006009 ORTHO05D007389 2.3e-126 457.2 425 64.9
Sed0013076 Sechium edule HOM05D006009 ORTHO05D007389 7.2e-120 435.6 581 50.6
CAN.G855.52 Capsicum annuum HOM05D006009 ORTHO05D007389 2.0e-117 427.6 363 66.1
GSVIVG01023147001 Vitis vinifera HOM05D006009 ORTHO05D007389 4.4e-109 399.8 297 72.1
CAN.G855.51 Capsicum annuum HOM05D006009 ORTHO05D007389 2.9e-105 387.1 374 61.2
Oeu028479.1 Olea europaea HOM05D006009 ORTHO05D007389 3.0e-102 377.1 272 73.2
Pp3c17_20400 Physcomitrium patens HOM05D006009 ORTHO05D007389 7.0e-83 312.8 704 33.8
Zm00001eb145920 Zea mays HOM05D006009 ORTHO05D007389 8.0e-79 299.3 445 46.5
Cpa.g.sc173.20 Carica papaya HOM05D006009 ORTHO05D007389 2.6e-77 294.3 367 52.0
Sabra01G0173900 Salix brachista HOM05D006009 ORTHO05D007389 2.9e-76 290.8 502 45.0
Mapoly0034s0031 Marchantia polymorpha HOM05D006009 ORTHO05D007389 3.3e-72 277.3 688 30.5
ECA234G2367 Erigeron canadensis HOM05D000005 ORTHO05D000012 7.3e-72 276.2 339 54.0
Oeu028480.1 Olea europaea HOM05D006009 ORTHO05D007389 1.5e-69 268.5 272 58.8
AagrBONN_evm.TU.Sc2ySwM_228.1218 Anthoceros agrestis HOM05D006009 ORTHO05D007389 2.0e-69 268.1 661 31.3
CBR_g38734 Chara braunii HOM05D006009 ORTHO05D007389 4.6e-66 256.9 709 30.5
SHI05061 Sapria himalayana HOM05D000030 ORTHO05D000009 4.4e-61 240.4 665 34.4
SMO343G0014 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 1.4e-59 235.3 714 29.3
Eucgr.D02407 Eucalyptus grandis HOM05D006009 ORTHO05D007389 2.4e-51 208.0 131 88.5
SEGI_34522 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 7.9e-26 123.2 84 66.7
SEGI_19376 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 1.8e-22 112.1 110 54.5
Hund15371 Selenicereus undatus HOM05D006009 ORTHO05D007389 2.6e-21 108.2 163 47.9
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 2.9e-20 104.8 104 56.7
PRCOL_00003389 Prasinoderma coloniale HOM05D006009 ORTHO05D007389 4.2e-19 100.9 510 23.3
QL08p014094 Quercus lobata HOM05D006009 ORTHO05D007389 2.7e-18 98.2 107 53.3
SEGI_26370 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 6.1e-18 97.1 124 46.8
Oeu028483.1 Olea europaea HOM05D006009 ORTHO05D007389 1.1e-16 92.8 100 55.0
Glyma.14G105500 Glycine max HOM05D006009 ORTHO05D007389 4.3e-16 90.9 70 68.6
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 8.2e-15 86.7 55 81.8
SEGI_01187 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 1.1e-14 86.3 165 36.4
MBI06_g11892_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D004199 7.7e-13 80.1 101 50.5
MCO13G251 Micromonas commoda HOM05D006009 ORTHO05D007389 1.3e-12 79.3 118 37.3
SMO343G0089 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 1.3e-12 79.3 238 30.3
MBI18_g20174_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 8.5e-12 76.6 73 54.8
GSVIVG01023072001 Vitis vinifera HOM05D001300 ORTHO05D014438 2.5e-11 75.1 92 47.8
Zm00001eb351220 Zea mays HOM05D006009 ORTHO05D007389 3.2e-11 74.7 57 66.7
MD15G1442500 Malus domestica HOM05D006009 ORTHO05D007389 1.1e-06 59.7 41 65.9
RhsimUnG0219700 Rhododendron simsii HOM05D006009 ORTHO05D007389 1.4e-06 59.3 41 75.6


User provided reference genes

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