Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 8.6e-134 480.3 244 100.0
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 7.6e-106 387.5 242 78.5
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 1.7e-97 359.8 249 75.1
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 6.4e-97 357.8 244 77.5
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.6e-95 351.7 248 74.2
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 1.0e-94 350.5 246 74.4
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 1.0e-94 350.5 250 74.8
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.0e-94 350.5 248 73.8
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 1.3e-94 350.1 242 74.0
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 2.3e-94 349.4 248 73.8
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 3.0e-94 349.0 250 74.4
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 3.0e-94 349.0 248 73.4
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 3.9e-94 348.6 241 75.1
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 5.1e-94 348.2 249 72.7
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 1.1e-93 347.1 248 74.6
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 1.5e-93 346.7 248 72.2
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 1.5e-93 346.7 242 73.6
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 1.5e-93 346.7 241 75.1
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 1.9e-93 346.3 247 75.3
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 7.4e-93 344.4 250 74.0
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.1e-92 342.8 248 71.0
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 3.7e-92 342.0 249 72.3
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 3.7e-92 342.0 254 70.9
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 4.8e-92 341.7 251 72.9
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 4.8e-92 341.7 251 72.9
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 4.8e-92 341.7 250 73.2
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 4.8e-92 341.7 244 75.4
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 8.2e-92 340.9 248 70.6
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 8.2e-92 340.9 251 73.3
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 1.8e-91 339.7 249 72.7
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 2.4e-91 339.3 250 71.6
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 3.1e-91 339.0 244 73.8
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 3.1e-91 339.0 251 71.3
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 4.0e-91 338.6 245 72.7
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 6.9e-91 337.8 253 70.8
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 1.2e-90 337.0 247 72.1
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.2e-90 337.0 252 70.2
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 1.5e-90 336.7 265 68.3
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 1.5e-90 336.7 242 73.6
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 2.0e-90 336.3 246 72.8
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 2.6e-90 335.9 248 72.2
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 2.6e-90 335.9 250 71.6
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 4.5e-90 335.1 243 70.8
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.5e-90 335.1 248 69.8
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 7.6e-90 334.3 249 71.9
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 2.9e-89 332.4 252 69.8
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 3.8e-89 332.0 244 69.3
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 4.9e-89 331.6 252 70.2
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 6.5e-89 331.3 252 69.4
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 6.5e-89 331.3 251 71.7
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 6.5e-89 331.3 245 71.4
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.4e-89 330.9 248 72.2
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.4e-89 330.9 248 72.2
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 8.4e-89 330.9 248 72.2
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 1.1e-88 330.5 248 72.2
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.9e-88 329.7 248 71.4
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.9e-88 329.7 248 71.4
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 5.5e-88 328.2 248 71.8
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 5.5e-88 328.2 248 71.4
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 5.5e-88 328.2 251 70.5
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 9.3e-88 327.4 252 70.6
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 9.3e-88 327.4 250 71.6
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 1.2e-87 327.0 248 70.6
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 2.1e-87 326.2 245 68.2
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 3.5e-87 325.5 242 69.0
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 4.6e-87 325.1 253 69.2
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 7.9e-87 324.3 247 70.4
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 2.3e-86 322.8 244 69.3
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 3.0e-86 322.4 254 66.1
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 3.9e-86 322.0 252 68.7
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 6.7e-86 321.2 250 67.2
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 8.7e-86 320.9 244 66.8
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.1e-85 320.5 251 68.1
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 2.5e-85 319.3 254 65.7
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 3.3e-85 318.9 244 68.0
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 4.3e-85 318.5 243 66.7
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 7.4e-85 317.8 246 66.3
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 1.6e-84 316.6 255 64.3
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 2.2e-84 316.2 259 67.2
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 2.8e-84 315.8 253 65.2
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 3.7e-84 315.5 261 63.2
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 6.3e-84 314.7 255 63.9
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 6.3e-84 314.7 255 63.9
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 6.3e-84 314.7 219 72.1
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 6.3e-84 314.7 251 69.3
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 8.2e-84 314.3 248 64.1
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 8.2e-84 314.3 255 63.9
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 2.4e-83 312.8 253 63.6
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 3.1e-83 312.4 259 66.4
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 5.3e-83 311.6 244 65.2
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 6.9e-83 311.2 248 64.1
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 6.9e-83 311.2 253 63.2
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 1.2e-82 310.5 254 64.2
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 1.5e-82 310.1 245 67.3
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 2.0e-82 309.7 254 66.9
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 2.6e-82 309.3 248 64.1
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 7.6e-82 307.8 229 70.7
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 1.7e-81 306.6 247 65.6
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 8.5e-81 304.3 250 65.2
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.1e-80 303.9 253 64.0
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 1.1e-80 303.9 240 67.1
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 3.2e-80 302.4 236 67.4
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 4.2e-80 302.0 256 63.3
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 5.5e-80 301.6 311 56.9
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 7.2e-80 301.2 231 68.0
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 2.7e-79 299.3 244 63.1
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 3.6e-79 298.9 254 65.4
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 7.9e-79 297.7 232 67.2
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 7.9e-79 297.7 248 65.3
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 2.3e-78 296.2 233 70.4
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 3.0e-78 295.8 246 63.8
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 3.9e-78 295.4 245 64.5
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 6.7e-78 294.7 232 66.8
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 6.7e-78 294.7 240 65.0
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.1e-77 293.9 253 62.5
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 1.5e-77 293.5 261 62.8
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 1.3e-76 290.4 319 53.6
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 1.3e-76 290.4 257 64.2
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 1.7e-76 290.0 249 63.5
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 1.7e-76 290.0 249 63.5
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 1.7e-76 290.0 249 63.5
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 8.2e-76 287.7 243 61.7
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.4e-75 287.0 205 69.3
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 3.1e-75 285.8 248 62.5
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 3.1e-75 285.8 239 65.7
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.1e-75 285.4 215 67.4
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 4.1e-75 285.4 230 67.0
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 5.3e-75 285.0 243 63.8
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 5.3e-75 285.0 242 64.5
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 2.9e-73 279.3 229 64.2
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 7.2e-72 274.6 244 60.7
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 7.9e-71 271.2 243 61.7
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 6.7e-70 268.1 258 55.8
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 5.7e-69 265.0 319 49.5
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 8.5e-65 251.1 226 59.3
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 3.2e-64 249.2 147 78.9
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 6.1e-63 245.0 235 57.0
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 3.9e-62 242.3 249 52.2
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 5.2e-62 241.9 230 58.3
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 7.4e-61 238.0 242 52.9
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 8.2e-60 234.6 147 74.8
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 1.7e-57 226.9 136 77.9
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 8.0e-55 218.0 245 50.2
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 8.2e-52 208.0 169 60.9
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 5.3e-51 205.3 169 60.9
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 3.5e-50 202.6 169 60.4
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 4.7e-47 192.2 266 44.4
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 1.4e-46 190.7 284 43.0
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 1.8e-46 190.3 117 81.2
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 6.8e-46 188.3 113 77.0
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.4e-43 180.6 187 56.1
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 1.5e-32 144.1 261 37.5
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 1.9e-32 143.7 269 38.7
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 5.2e-30 135.6 127 65.4
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 3.2e-27 126.3 129 60.5
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 4.6e-26 122.5 95 64.2
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 5.6e-24 115.5 69 78.3
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 2.8e-23 113.2 101 66.3
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 2.3e-22 110.2 91 54.9
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 3.2e-19 99.8 92 59.8
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 5.1e-17 92.4 110 37.3
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 4.3e-16 89.4 90 45.6
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 1.2e-15 87.8 75 64.0
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 3.6e-15 86.3 121 50.4
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 5.2e-14 82.4 75 60.0
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 2.9e-12 76.6 67 55.2
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 4.9e-12 75.9 130 43.1
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 3.9e-09 66.2 81 46.9
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 5.1e-09 65.9 129 35.7
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 7.3e-08 62.0 93 43.0


User provided reference genes

Program Settings