Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 0.0e+00 1275.0 667 100.0
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 2.9e-277 958.4 668 76.9
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 1.8e-274 949.1 669 76.4
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 1.4e-271 939.5 661 75.8
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 1.1e-268 929.9 677 74.7
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 4.3e-268 927.9 664 75.6
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 7.3e-268 927.2 671 75.3
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 7.3e-268 927.2 671 75.3
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 2.1e-267 925.6 677 75.0
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 2.8e-267 925.2 678 74.3
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 3.6e-267 924.9 679 72.8
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 8.9e-266 920.2 675 73.8
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.1e-263 913.3 677 73.3
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 9.2e-263 910.2 674 74.3
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 3.9e-261 904.8 670 73.7
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 4.3e-260 901.4 681 73.7
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 4.3e-260 901.4 680 73.2
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 5.6e-260 901.0 697 72.3
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 6.2e-259 897.5 669 72.6
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 6.2e-259 897.5 676 72.3
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 4.0e-258 894.8 704 67.8
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 4.0e-258 894.8 640 75.9
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 2.0e-257 892.5 679 72.2
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 7.8e-254 880.6 674 72.6
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 3.0e-253 878.6 684 70.5
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 5.1e-253 877.9 669 71.2
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 4.3e-252 874.8 732 68.3
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 5.6e-252 874.4 673 71.5
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 3.4e-249 865.1 674 70.6
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 1.3e-248 863.2 634 73.5
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 3.8e-248 861.7 670 71.6
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 3.5e-246 855.1 675 71.4
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 6.0e-246 854.4 688 70.6
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.7e-245 852.8 677 69.9
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 3.0e-245 852.0 677 69.9
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 1.5e-244 849.7 677 68.4
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 2.5e-244 849.0 624 74.8
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.5e-244 849.0 671 70.9
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 7.3e-244 847.4 669 70.9
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 4.8e-243 844.7 673 69.5
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 3.4e-241 838.6 581 77.3
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 5.8e-241 837.8 798 62.2
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 9.9e-241 837.0 669 70.0
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 4.6e-238 828.2 644 70.8
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 1.3e-237 826.6 606 74.9
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 3.0e-237 825.5 681 68.4
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 4.8e-235 818.1 684 67.3
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 3.1e-234 815.5 679 67.6
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 1.2e-233 813.5 686 66.8
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 4.5e-233 811.6 674 68.7
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 1.3e-232 810.1 655 69.2
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 1.7e-232 809.7 677 66.9
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 3.8e-232 808.5 676 64.2
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.9e-229 798.5 640 69.7
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 1.5e-228 796.6 672 68.8
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 1.9e-228 796.2 671 65.4
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 1.9e-228 796.2 612 71.9
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 4.3e-228 795.0 672 68.3
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.1e-226 790.4 677 66.2
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 6.9e-226 787.7 645 69.0
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 1.3e-224 783.5 650 67.7
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 6.5e-224 781.2 561 76.1
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 1.4e-223 780.0 638 68.7
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 1.8e-221 773.1 687 65.5
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 1.3e-219 766.9 557 76.3
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 6.2e-219 764.6 688 64.4
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.1e-218 762.3 605 70.9
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 1.1e-212 743.8 659 65.7
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 2.5e-212 742.7 737 57.9
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 7.4e-212 741.1 671 64.7
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 6.9e-210 734.6 671 63.9
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 6.9e-210 734.6 678 60.0
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 1.0e-208 730.7 658 64.6
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 1.9e-207 726.5 684 62.9
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 3.2e-207 725.7 669 62.8
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 5.5e-207 724.9 669 63.2
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 7.2e-207 724.5 544 73.5
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 7.2e-207 724.5 662 63.4
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 2.1e-206 723.0 666 64.0
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 4.6e-206 721.8 525 73.9
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 2.3e-205 719.5 666 62.3
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 2.3e-205 719.5 666 62.3
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 1.7e-203 713.4 667 62.4
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 1.7e-203 713.4 667 62.4
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 4.8e-203 711.8 667 62.2
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 6.9e-202 708.0 666 61.6
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 6.9e-202 708.0 666 61.6
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 4.5e-201 705.3 702 60.4
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 1.4e-194 683.7 694 59.8
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 1.5e-193 680.2 497 75.5
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 5.9e-193 678.3 681 56.4
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.5e-191 673.7 605 61.0
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 7.5e-188 661.4 674 58.5
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 1.7e-187 660.2 674 56.4
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.1e-186 657.5 623 62.1
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 9.4e-183 644.4 674 55.6
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 1.0e-181 641.0 459 76.0
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 1.7e-179 633.6 656 59.9
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 7.7e-177 624.8 615 58.4
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 4.4e-172 609.0 667 55.9
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 1.3e-171 607.4 608 59.4
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 2.2e-171 606.7 723 50.2
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 2.4e-162 576.6 468 64.7
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 4.4e-156 555.8 414 75.8
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 2.9e-155 553.1 659 52.0
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 4.1e-154 549.3 676 52.2
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 9.8e-148 528.1 609 51.2
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 2.1e-142 510.4 434 68.2
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 1.4e-141 507.7 580 51.2
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.9e-135 487.3 677 45.6
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 4.3e-127 459.5 569 49.4
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 3.1e-125 453.4 509 57.0
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 2.8e-118 430.3 554 48.7
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 2.8e-110 403.7 688 42.4
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 1.3e-104 384.8 317 75.7
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 2.6e-100 370.5 562 45.9
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 5.0e-99 366.3 284 78.9
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 5.3e-77 293.1 305 61.6
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.0e-76 291.2 485 39.8
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 5.3e-69 266.5 180 87.2
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.2e-65 255.4 335 42.7
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.7e-62 245.0 200 61.5
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 1.8e-61 241.5 307 54.4
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 4.5e-60 236.9 323 42.4
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.5e-58 231.1 289 43.3
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.5e-55 221.9 294 52.7
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 3.4e-55 220.7 226 64.6
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 1.5e-50 205.3 167 59.9
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 9.5e-50 202.6 191 74.3
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 2.8e-49 201.1 278 49.3
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 6.4e-46 189.9 143 71.3
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 6.4e-46 189.9 235 43.8
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 2.8e-41 174.5 102 93.1
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 1.1e-34 152.5 250 39.6
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 2.6e-31 141.4 83 80.7
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.2e-23 115.9 89 76.4
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.2e-23 115.9 128 44.5
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 1.3e-19 102.4 316 27.2
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 1.5e-18 99.0 58 79.3
SHI16685 Sapria himalayana HOM05D004640 ORTHO05D005489 2.4e-16 91.7 173 34.1
Haze_01802 Corylus avellana HOM05D004640 ORTHO05D005489 5.2e-16 90.5 71 60.6
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 1.2e-15 89.4 90 46.7
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 1.2e-15 89.4 90 46.7
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.5e-15 89.0 120 50.8
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 2.0e-15 88.6 63 61.9
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 5.8e-15 87.0 51 80.4
SEGI_15466 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 4.6e-12 77.4 139 32.4
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 8.7e-11 73.2 53 62.3
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 3.6e-09 67.8 134 32.8
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 8.1e-09 66.6 63 49.2
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 8.1e-09 66.6 63 49.2
arahy.Tifrunner.gnm1.ann1.VBF1S6 Arachis hypogaea HOM05D002443 ORTHO05D002674 1.4e-08 65.9 106 46.2
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 9.9e-07 59.7 36 86.1
A03p68880 Brassica napus HOM05D004640 ORTHO05D005489 1.3e-06 59.3 77 48.1
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 2.2e-06 58.5 34 88.2
SHI16674 Sapria himalayana HOM05D004640 ORTHO05D005489 6.4e-06 57.0 35 68.6
SEGI_36483 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 6.4e-06 57.0 58 51.7


User provided reference genes

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