Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 6.4e-246 853.6 420 100.0
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 1.8e-203 712.6 420 80.0
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 4.4e-202 708.0 420 79.0
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 4.4e-202 708.0 420 78.3
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 4.4e-202 708.0 420 78.1
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 9.7e-202 706.8 420 79.3
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 9.7e-202 706.8 420 78.6
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 4.5e-199 698.0 420 77.4
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 7.7e-199 697.2 419 78.3
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 1.7e-198 696.0 420 78.3
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.7e-198 696.0 420 78.3
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 2.9e-198 695.3 420 77.9
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 8.5e-198 693.7 420 76.9
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 1.5e-197 693.0 420 77.9
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 1.9e-197 692.6 420 77.6
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 1.9e-197 692.6 420 76.7
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 2.5e-197 692.2 420 78.8
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 7.2e-197 690.6 420 77.6
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.1e-196 689.1 420 76.2
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 3.6e-196 688.3 420 77.9
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 6.1e-196 687.6 420 77.1
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.8e-195 686.0 420 76.9
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 4.0e-195 684.9 420 77.1
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 2.0e-194 682.6 420 77.4
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.2e-193 679.1 420 76.4
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 4.8e-193 677.9 420 77.1
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 8.3e-193 677.2 420 76.2
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 2.4e-192 675.6 420 76.2
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 4.1e-192 674.9 420 76.0
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 5.4e-192 674.5 420 76.2
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 5.4e-192 674.5 420 76.2
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 5.4e-192 674.5 420 76.2
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 1.2e-191 673.3 420 75.7
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 1.6e-191 672.9 420 75.2
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 5.9e-191 671.0 420 75.7
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 5.9e-191 671.0 420 75.2
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 7.7e-191 670.6 420 76.2
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 1.0e-190 670.2 420 76.9
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 3.6e-188 661.8 421 75.3
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 4.7e-188 661.4 405 76.8
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 6.1e-188 661.0 420 74.8
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 1.0e-187 660.2 420 73.8
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 5.2e-187 657.9 420 74.5
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 6.8e-187 657.5 420 74.3
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 2.0e-186 656.0 420 75.2
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 2.6e-186 655.6 420 75.5
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 4.4e-186 654.8 420 74.8
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 5.7e-186 654.4 420 74.5
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 2.2e-185 652.5 420 72.6
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 1.8e-184 649.4 420 73.8
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 5.4e-184 647.9 420 73.8
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 7.0e-184 647.5 420 72.9
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 4.5e-183 644.8 421 74.3
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 1.0e-182 643.7 420 71.4
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 1.3e-182 643.3 420 72.9
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 3.8e-182 641.7 421 73.6
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 5.0e-182 641.3 425 71.8
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 6.6e-182 641.0 419 72.1
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 8.6e-182 640.6 420 71.9
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 4.3e-181 638.3 415 71.1
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 9.5e-181 637.1 420 71.7
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 9.5e-181 637.1 420 72.6
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 9.5e-181 637.1 420 72.4
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 1.2e-180 636.7 420 71.0
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 4.7e-180 634.8 420 71.7
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 8.0e-180 634.0 420 71.7
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.0e-179 633.6 420 72.6
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 2.3e-179 632.5 420 71.7
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 6.8e-179 630.9 425 69.9
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 4.4e-178 628.2 425 69.6
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 1.3e-177 626.7 425 70.8
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 1.7e-177 626.3 420 72.1
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 1.7e-177 626.3 423 72.3
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 2.9e-177 625.5 421 72.7
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 8.3e-177 624.0 423 70.7
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 9.2e-176 620.5 421 69.8
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 3.5e-175 618.6 421 70.3
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 1.7e-174 616.3 409 72.1
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 3.0e-174 615.5 420 69.0
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 3.3e-173 612.1 420 68.6
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 4.3e-173 611.7 420 68.1
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 7.3e-173 610.9 407 70.8
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 4.0e-171 605.1 424 69.1
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 4.0e-171 605.1 420 69.8
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 1.2e-170 603.6 420 68.8
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 1.5e-170 603.2 422 68.0
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 2.0e-170 602.8 420 67.4
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 9.8e-170 600.5 420 66.7
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 1.3e-169 600.1 421 68.4
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 1.9e-168 596.3 420 68.3
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 7.0e-168 594.3 421 69.1
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 1.0e-166 590.5 420 68.1
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 1.3e-166 590.1 420 68.1
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 3.9e-166 588.6 420 67.6
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 6.6e-166 587.8 420 67.1
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 2.5e-165 585.9 420 66.4
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 4.3e-165 585.1 420 67.4
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 7.3e-165 584.3 420 67.4
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 1.2e-164 583.6 420 66.9
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 1.2e-164 583.6 420 66.9
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 3.6e-164 582.0 420 67.1
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 8.3e-161 570.9 420 64.0
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 4.3e-157 558.5 421 66.5
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 1.2e-156 557.0 420 62.4
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 2.1e-156 556.2 421 65.3
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 5.8e-154 548.1 421 62.5
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 7.6e-154 547.7 422 64.2
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 7.6e-154 547.7 377 67.4
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 2.2e-153 546.2 421 64.1
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 1.1e-152 543.9 420 60.7
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 1.1e-147 527.3 420 60.0
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 2.4e-147 526.2 421 61.5
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 3.1e-147 525.8 425 59.8
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 7.4e-133 478.0 357 66.4
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 1.6e-132 476.9 407 57.7
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 3.5e-127 459.1 425 54.1
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 3.1e-123 446.0 425 52.7
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 5.8e-122 441.8 251 83.7
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 5.5e-120 435.3 282 72.3
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 3.4e-114 416.0 422 50.5
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 6.5e-113 411.8 326 60.7
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 1.4e-112 410.6 403 48.1
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 1.6e-95 354.0 302 59.6
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 1.1e-93 347.8 375 45.3
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 1.5e-93 347.4 410 45.9
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 8.5e-89 331.6 305 53.8
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.9e-88 330.5 248 61.7
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 2.3e-70 270.4 317 42.9
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 2.4e-67 260.4 266 52.6
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 1.5e-64 251.1 134 84.3
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 5.6e-48 196.1 131 73.3
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 4.0e-46 189.9 161 60.9
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.1e-38 165.2 99 76.8
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 2.7e-34 150.6 91 76.9
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.7e-28 131.3 74 78.4
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 4.9e-28 129.8 71 80.3
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 1.6e-26 124.8 71 78.9
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 2.3e-25 120.9 71 77.5
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 2.3e-25 120.9 71 77.5
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 3.3e-24 117.1 106 56.6
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 7.6e-21 105.9 97 56.7
FAN17G2978 Fragaria x ananassa HOM05D030415 ORTHO05D006431 1.0e-09 68.9 191 31.4
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 1.1e-08 65.5 236 26.3
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 1.5e-08 65.1 240 26.7
Zm00001eb147200 Zea mays HOM05D003488 ORTHO05D004214 1.5e-08 65.1 303 22.8
MBI05_g08793_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 2.5e-08 64.3 275 26.5
MBI05_g43550_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 3.3e-08 63.9 275 26.5
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 4.3e-08 63.5 240 26.7
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 4.3e-08 63.5 240 26.7
RcHm_v2.0_Chr5g0028461 Rosa chinensis HOM05D000051 ORTHO05D000015 1.3e-07 62.0 245 22.0
RcHm_v2.0_Chr5g0028491 Rosa chinensis HOM05D000051 ORTHO05D000015 8.2e-07 59.3 167 28.7
FvH4_5g01320 Fragaria vesca HOM05D000312 ORTHO05D000221 1.1e-06 58.9 284 23.2
FAN18G3400 Fragaria x ananassa HOM05D000312 ORTHO05D000221 1.1e-06 58.9 284 23.2
Medtr7g104490 Medicago truncatula HOM05D003488 ORTHO05D004214 1.1e-06 58.9 306 23.5
Haze_15913 Corylus avellana HOM05D001477 ORTHO05D001182 2.4e-06 57.8 224 24.6
RcHm_v2.0_Chr5g0028581 Rosa chinensis HOM05D000051 ORTHO05D000015 2.4e-06 57.8 327 25.7
Peaxi162Scf00179g00923 Petunia axillaris HOM05D000312 ORTHO05D000221 3.1e-06 57.4 169 30.2


User provided reference genes

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