Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 2.4e-110 402.1 198 100.0
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 7.8e-85 317.4 198 76.8
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 7.8e-85 317.4 198 78.3
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 7.8e-85 317.4 198 78.3
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.0e-84 317.0 198 78.3
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 1.7e-84 316.2 198 78.3
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 6.6e-84 314.3 198 77.3
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 6.6e-84 314.3 198 77.3
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 8.7e-84 313.9 198 76.8
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.5e-83 313.2 198 76.8
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 1.5e-83 313.2 198 77.8
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 4.3e-83 311.6 198 74.7
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 4.3e-83 311.6 198 73.7
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 4.3e-83 311.6 198 74.2
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 5.6e-83 311.2 198 76.3
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 7.3e-83 310.8 198 74.7
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 9.6e-83 310.5 198 74.2
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 1.3e-82 310.1 198 76.3
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 1.3e-82 310.1 198 74.2
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 1.6e-82 309.7 198 74.2
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 3.6e-82 308.5 198 74.2
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 8.1e-82 307.4 198 74.7
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 2.4e-81 305.8 198 73.7
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 3.1e-81 305.4 198 73.2
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 5.3e-81 304.7 198 74.2
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 1.2e-80 303.5 199 75.4
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 1.5e-80 303.1 198 73.7
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 2.0e-80 302.8 198 71.2
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 2.0e-80 302.8 198 72.7
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 4.4e-80 301.6 200 74.5
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 7.6e-80 300.8 198 70.2
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 7.6e-80 300.8 198 72.7
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 7.6e-80 300.8 198 72.7
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 9.9e-80 300.4 198 73.7
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 1.7e-79 299.7 198 71.7
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 6.4e-79 297.7 198 72.7
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 8.4e-79 297.4 198 71.7
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 1.1e-78 297.0 198 71.2
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 1.4e-78 296.6 198 70.2
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 2.4e-78 295.8 199 72.9
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 5.4e-78 294.7 198 73.2
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 5.4e-78 294.7 198 70.7
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 1.2e-77 293.5 198 71.2
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 3.5e-77 292.0 198 69.7
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 4.6e-77 291.6 198 70.2
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 4.6e-77 291.6 198 69.2
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 3.9e-76 288.5 200 68.5
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.9e-76 288.5 206 68.0
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 5.1e-76 288.1 206 68.0
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 6.6e-76 287.7 198 66.7
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 1.1e-75 287.0 198 67.7
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 1.5e-75 286.6 216 66.2
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 2.5e-75 285.8 176 78.4
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.5e-75 285.8 198 69.2
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 4.3e-75 285.0 198 69.2
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 4.3e-75 285.0 198 70.2
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 9.6e-75 283.9 198 67.2
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 9.6e-75 283.9 198 68.7
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 9.6e-75 283.9 198 66.7
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 9.6e-75 283.9 198 69.2
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 1.3e-74 283.5 198 66.7
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 1.6e-74 283.1 198 68.7
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 1.6e-74 283.1 198 64.6
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 2.8e-74 282.3 198 68.2
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 3.6e-74 282.0 198 67.7
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 3.6e-74 282.0 198 66.2
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 4.8e-74 281.6 198 66.7
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 8.1e-74 280.8 198 65.7
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 8.1e-74 280.8 198 65.7
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 8.1e-74 280.8 198 69.2
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 1.4e-73 280.0 198 65.2
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 1.4e-73 280.0 198 67.7
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 2.4e-73 279.3 198 65.7
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 2.4e-73 279.3 198 67.7
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 3.1e-73 278.9 198 65.2
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 4.0e-73 278.5 198 67.7
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 5.3e-73 278.1 198 65.7
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 5.3e-73 278.1 198 65.2
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 5.3e-73 278.1 234 59.8
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 6.9e-73 277.7 234 59.4
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 9.0e-73 277.3 241 60.2
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 1.5e-72 276.6 198 65.2
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 2.6e-72 275.8 198 67.2
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 3.4e-72 275.4 198 64.6
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 7.6e-72 274.2 170 78.2
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 1.3e-71 273.5 198 64.6
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 1.3e-71 273.5 198 64.6
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 1.7e-71 273.1 198 63.6
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 2.2e-71 272.7 253 56.1
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 4.9e-71 271.6 198 64.1
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 6.4e-71 271.2 198 64.6
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 8.4e-71 270.8 216 60.6
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 1.9e-70 269.6 233 60.1
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 7.1e-70 267.7 182 69.2
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 3.5e-69 265.4 173 72.8
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 4.6e-69 265.0 219 58.9
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 7.9e-69 264.2 236 57.6
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 1.6e-66 256.5 198 62.6
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 1.8e-65 253.1 188 67.6
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 9.0e-65 250.8 191 63.4
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 3.4e-64 248.8 180 64.4
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 4.5e-64 248.4 162 74.1
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 4.9e-63 245.0 170 68.2
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 9.3e-62 240.7 198 63.6
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 7.9e-61 237.7 198 56.6
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 2.3e-60 236.1 159 70.4
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 1.5e-59 233.4 167 68.9
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 1.3e-58 230.3 198 52.0
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 6.3e-58 228.0 198 53.5
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 2.0e-56 223.0 198 58.1
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 9.3e-54 214.2 198 49.5
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 1.2e-53 213.8 196 50.0
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 6.1e-53 211.5 145 66.9
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 1.3e-52 210.3 135 75.6
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 2.5e-51 206.1 193 48.2
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 1.0e-47 194.1 143 67.8
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 3.2e-46 189.1 135 60.7
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 7.9e-45 184.5 185 55.7
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 6.7e-44 181.4 130 66.2
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 8.8e-44 181.0 160 52.5
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 8.8e-44 181.0 118 67.8
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 6.3e-42 174.9 123 62.6
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 8.2e-42 174.5 120 64.2
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 9.1e-41 171.0 115 72.2
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 6.5e-39 164.9 115 60.9
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 3.2e-38 162.5 115 60.0
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 7.2e-38 161.4 110 72.7
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 1.6e-37 160.2 145 52.4
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 3.0e-36 156.0 143 53.1
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 3.2e-30 136.0 92 62.0
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 5.7e-27 125.2 81 79.0
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 3.7e-26 122.5 118 55.1
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 2.4e-25 119.8 143 37.8
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 5.3e-25 118.6 77 77.9
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 7.0e-25 118.2 77 77.9
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 1.7e-23 113.6 77 74.0
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 1.7e-23 113.6 77 74.0
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 6.5e-23 111.7 77 74.0
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 1.1e-22 110.9 73 68.5
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 1.9e-22 110.2 72 70.8
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 4.2e-22 109.0 77 72.7
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 4.2e-22 109.0 75 73.3
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 5.5e-22 108.6 77 71.4
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 7.2e-22 108.2 69 79.7
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.3e-20 103.2 77 67.5
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 3.7e-18 95.9 55 78.2
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 4.8e-18 95.5 83 60.2
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.4e-17 94.0 74 64.9
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 1.4e-17 94.0 72 66.7
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 2.4e-17 93.2 98 42.9
PRCOL_00004865 Prasinoderma coloniale HOM05D004322 ORTHO05D005033 3.1e-17 92.8 191 28.3
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 1.3e-15 87.4 145 41.4
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 6.5e-15 85.1 63 68.3
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 7.2e-14 81.6 64 62.5
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 2.7e-13 79.7 55 56.4
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 4.7e-13 79.0 56 60.7
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 1.4e-12 77.4 119 36.1
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 2.3e-12 76.6 63 49.2
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 6.8e-12 75.1 56 57.1
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 3.7e-10 69.3 60 53.3
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 4.9e-10 68.9 63 54.0
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 1.1e-09 67.8 46 73.9
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 5.0e-07 58.9 53 52.8
TAR381G0540 Trochodendron aralioides HOM05D004322 ORTHO05D005033 1.9e-06 57.0 45 62.2


User provided reference genes

Program Settings