Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 0.0e+00 1087.4 530 100.0
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 3.8e-251 871.3 530 76.4
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 2.7e-249 865.1 530 75.8
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 3.1e-237 825.1 527 73.2
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.5e-236 822.8 516 74.0
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 4.2e-234 814.7 517 72.3
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 3.5e-233 811.6 513 73.7
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 4.6e-233 811.2 517 71.8
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 4.6e-233 811.2 518 72.2
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 6.0e-233 810.8 517 73.1
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 7.9e-233 810.4 517 73.3
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.0e-232 810.1 538 71.0
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.5e-231 806.2 523 72.8
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 1.3e-230 803.1 518 72.4
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 4.8e-230 801.2 528 70.1
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 6.3e-230 800.8 516 72.1
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 1.4e-229 799.7 529 70.3
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 1.4e-229 799.7 518 70.5
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 4.1e-229 798.1 523 71.5
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 1.2e-228 796.6 518 72.8
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 2.6e-228 795.4 518 70.7
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 1.3e-227 793.1 518 72.2
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 2.9e-227 792.0 513 72.3
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 8.5e-227 790.4 518 71.6
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 2.5e-226 788.9 524 69.5
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 2.5e-226 788.9 528 69.3
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 4.2e-226 788.1 528 68.2
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 4.2e-226 788.1 525 69.1
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 9.3e-226 786.9 517 70.0
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 9.3e-226 786.9 518 70.1
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 2.1e-225 785.8 517 70.2
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 2.7e-225 785.4 525 68.8
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 4.6e-225 784.6 513 71.0
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 3.0e-224 781.9 518 69.9
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 4.3e-223 778.1 519 69.7
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 5.7e-223 777.7 532 70.1
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 1.6e-222 776.2 519 69.7
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 1.6e-222 776.2 488 73.0
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 1.6e-222 776.2 513 70.6
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 2.8e-222 775.4 519 69.7
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 8.2e-222 773.9 521 69.9
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 3.1e-221 771.9 512 68.8
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 6.9e-221 770.8 512 68.6
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 1.2e-220 770.0 514 69.8
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 2.6e-220 768.8 518 69.5
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 3.4e-220 768.5 513 70.0
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 1.0e-219 766.9 513 69.6
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 1.7e-219 766.1 509 70.1
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 8.5e-219 763.8 518 68.5
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 1.4e-218 763.1 582 63.1
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 2.1e-217 759.2 516 66.7
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 3.6e-217 758.4 528 64.4
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 3.6e-217 758.4 513 69.0
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 3.0e-216 755.4 524 67.7
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 3.0e-216 755.4 526 65.0
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 2.0e-215 752.7 526 64.8
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 1.7e-214 749.6 526 64.3
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 6.9e-213 744.2 497 67.8
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 8.5e-211 737.3 527 63.9
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 8.5e-211 737.3 527 63.9
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 8.5e-211 737.3 514 65.2
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 3.2e-210 735.3 517 65.0
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 7.2e-210 734.2 517 64.6
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 2.1e-209 732.6 520 66.9
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 2.7e-209 732.3 517 64.4
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 3.6e-209 731.9 517 64.2
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 1.0e-208 730.3 471 71.1
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 1.8e-208 729.6 514 66.3
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 8.8e-208 727.2 469 69.9
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 1.1e-207 726.9 514 66.3
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 1.7e-206 723.0 515 66.4
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 3.1e-205 718.8 541 61.4
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 9.1e-205 717.2 542 61.4
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 2.6e-204 715.7 516 65.1
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 1.3e-203 713.4 558 61.1
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 1.3e-203 713.4 518 65.1
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 6.5e-203 711.1 520 65.2
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 1.4e-200 703.4 522 62.6
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 5.3e-197 691.4 510 65.5
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 9.1e-197 690.6 528 63.6
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 1.5e-194 683.3 515 64.5
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 2.5e-194 682.6 521 61.0
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 5.5e-194 681.4 585 59.0
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 7.2e-194 681.0 439 72.4
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 8.0e-193 677.6 434 70.7
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 1.0e-192 677.2 524 59.2
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.5e-191 673.3 525 63.0
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.2e-190 669.5 585 58.5
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 5.5e-186 654.8 398 75.1
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 9.5e-186 654.1 395 74.2
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 2.1e-185 652.9 571 57.1
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 8.0e-185 651.0 542 60.5
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 1.7e-182 643.3 501 63.3
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 1.8e-176 623.2 520 58.7
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 5.4e-173 611.7 489 60.5
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 4.6e-172 608.6 420 65.7
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 4.9e-166 588.6 489 58.9
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 3.2e-165 585.9 524 53.6
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 2.6e-159 566.2 532 52.1
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 4.9e-158 562.0 362 72.1
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 5.8e-151 538.5 503 54.1
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.2e-150 536.6 517 54.9
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.5e-146 523.9 304 78.9
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 3.3e-146 522.7 332 71.1
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 4.3e-138 495.7 519 50.1
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 9.9e-135 484.6 346 65.9
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 1.2e-132 477.6 290 73.8
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 7.4e-130 468.4 548 43.6
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 1.3e-129 467.6 447 51.2
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 8.1e-129 464.9 357 64.1
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 1.6e-124 450.7 336 63.7
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 3.3e-122 443.0 252 79.4
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 7.6e-111 405.2 286 65.7
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 3.8e-110 402.9 228 79.8
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 3.8e-110 402.9 228 79.8
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 6.7e-107 392.1 230 75.7
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 1.5e-106 391.0 231 76.6
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 2.7e-79 300.4 522 36.4
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.3e-78 298.1 205 70.2
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.9e-78 297.0 205 69.8
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 3.8e-78 296.6 540 35.6
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 7.2e-77 292.4 168 77.4
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 1.2e-71 275.0 516 35.7
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 1.7e-70 271.2 522 33.5
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 4.0e-67 260.0 488 34.6
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 5.7e-66 256.1 240 55.4
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 1.3e-65 255.0 169 68.0
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 8.0e-60 235.7 352 43.5
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 3.2e-56 223.8 194 54.1
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 1.4e-48 198.4 251 43.0
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 3.4e-42 177.2 338 35.8
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 2.2e-41 174.5 162 59.3
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 9.9e-34 149.1 85 70.6
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 7.1e-32 142.9 103 72.8
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 1.7e-30 138.3 102 68.6
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.6e-28 131.7 197 41.1
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 4.7e-28 130.2 99 64.6
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 3.1e-27 127.5 79 74.7
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 9.0e-27 125.9 108 57.4
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 4.4e-26 123.6 119 49.6
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.7e-22 111.7 94 55.3
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 7.9e-15 86.3 268 25.4
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 5.6e-13 80.1 41 75.6
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 5.6e-13 80.1 51 72.5
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 2.7e-07 61.2 98 38.8
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 1.0e-06 59.3 80 41.2
Medtr3g085120 Medicago truncatula HOM05D002545 ORTHO05D002335 3.9e-06 57.4 115 35.7


User provided reference genes

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