Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02591 Eucalyptus grandis HOM05D002753 ORTHO05D003097 1.4e-93 346.3 171 100.0
GSVIVG01038511001 Vitis vinifera HOM05D002753 ORTHO05D003097 2.0e-52 209.5 159 63.5
ClCG09G016500 Citrullus lanatus HOM05D002753 ORTHO05D003097 1.3e-51 206.8 145 66.9
Prupe.8G074100 Prunus persica HOM05D002753 ORTHO05D003097 8.3e-51 204.1 151 64.9
TWI23G0822 Tripterygium wilfordii HOM05D002753 ORTHO05D003097 8.3e-51 204.1 146 66.4
Dinv08972 Davidia involucrata HOM05D002753 ORTHO05D003097 3.2e-50 202.2 151 62.9
MELO3C018558.2 Cucumis melo HOM05D002753 ORTHO05D003097 5.4e-50 201.4 151 64.9
PGR142G3779 Punica granatum HOM05D002753 ORTHO05D003097 7.1e-50 201.1 150 67.3
CiPaw.05G027300 Carya illinoinensis HOM05D002753 ORTHO05D003097 1.2e-49 200.3 151 64.2
FvH4_1g23320 Fragaria vesca HOM05D002753 ORTHO05D003097 3.5e-49 198.7 146 66.4
FAN19G2857 Fragaria x ananassa HOM05D002753 ORTHO05D003097 3.5e-49 198.7 146 66.4
FAN26G3199 Fragaria x ananassa HOM05D002753 ORTHO05D003097 3.5e-49 198.7 146 66.4
TAR376G1183 Trochodendron aralioides HOM05D002753 ORTHO05D003097 6.0e-49 198.0 149 62.4
Sed0024829 Sechium edule HOM05D002753 ORTHO05D003097 7.8e-49 197.6 159 60.4
Haze_10436 Corylus avellana HOM05D002753 ORTHO05D003097 1.3e-48 196.8 148 62.8
CSS0000609 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 1.7e-48 196.4 149 62.4
CSS0006440 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 1.7e-48 196.4 149 62.4
CSS0037026 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 1.7e-48 196.4 149 62.4
Sabra16G0177700 Salix brachista HOM05D002753 ORTHO05D003097 2.3e-48 196.1 150 62.0
TAR376G0119 Trochodendron aralioides HOM05D002753 ORTHO05D003097 2.3e-48 196.1 149 61.7
RcHm_v2.0_Chr2g0118161 Rosa chinensis HOM05D002753 ORTHO05D003097 3.9e-48 195.3 146 64.4
MD10G1056400 Malus domestica HOM05D002753 ORTHO05D003097 5.1e-48 194.9 151 62.3
CsaV3_7G007440 Cucumis sativus L. HOM05D002753 ORTHO05D003097 6.6e-48 194.5 145 64.1
Duzib132G0158 Durio zibethinus HOM05D002753 ORTHO05D003097 8.6e-48 194.1 151 64.2
Atru.chr6.1395 Acer truncatum HOM05D002753 ORTHO05D003097 3.3e-47 192.2 148 62.2
Lsat_1_v5_gn_5_111001 Lactuca sativa HOM05D002753 ORTHO05D003097 3.3e-47 192.2 148 62.8
Thecc.02G125700 Theobroma cacao HOM05D002753 ORTHO05D003097 3.3e-47 192.2 164 61.0
CSS0028145 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 4.3e-47 191.8 154 58.4
Oeu033798.3 Olea europaea HOM05D002753 ORTHO05D003097 5.6e-47 191.4 156 57.7
Potri.001G285000 Populus trichocarpa HOM05D002753 ORTHO05D003097 9.6e-47 190.7 157 59.2
Lj5A226G57 Lonicera japonica HOM05D002753 ORTHO05D003097 2.1e-46 189.5 153 58.2
DCAR_001841 Daucus carota HOM05D002753 ORTHO05D003097 2.8e-46 189.1 165 53.9
FAN23G1321 Fragaria x ananassa HOM05D002753 ORTHO05D003097 4.7e-46 188.3 146 64.4
QL11p026419 Quercus lobata HOM05D002753 ORTHO05D003097 4.7e-46 188.3 144 61.8
Nitab4.5_0000935g0210 Nicotiana tabacum HOM05D002753 ORTHO05D003097 8.1e-46 187.6 149 59.7
CSS0023717 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 2.4e-45 186.0 147 59.9
Rhsim05G0097100 Rhododendron simsii HOM05D002753 ORTHO05D003097 2.4e-45 186.0 153 60.1
vmacro19599 Vaccinium macrocarpon HOM05D002753 ORTHO05D003097 3.1e-45 185.7 153 60.1
CANSAT54G2703 Cannabis sativa HOM05D002753 ORTHO05D003097 5.2e-45 184.9 164 58.5
ECA234G0873 Erigeron canadensis HOM05D002753 ORTHO05D003097 5.2e-45 184.9 153 60.1
Nn2g15300 Nelumbo nucifera HOM05D002753 ORTHO05D003097 1.2e-44 183.7 148 61.5
SalBow6G5254 Salvia bowleyana HOM05D002753 ORTHO05D003097 1.2e-44 183.7 155 58.7
Manes.10G093500 Manihot esculenta HOM05D002753 ORTHO05D003097 1.5e-44 183.3 148 59.5
Nitab4.5_0005163g0040 Nicotiana tabacum HOM05D002753 ORTHO05D003097 1.5e-44 183.3 147 58.5
CAN.G504.39 Capsicum annuum HOM05D002753 ORTHO05D003097 2.0e-44 183.0 149 57.0
SHI21328 Sapria himalayana HOM05D002753 ORTHO05D003097 4.4e-44 181.8 153 59.5
Sopen01g048580 Solanum pennellii HOM05D002753 ORTHO05D003097 4.4e-44 181.8 155 56.1
CSS0003377 Camellia sinensis var. sinensis HOM05D002753 ORTHO05D003097 9.9e-44 180.6 147 57.8
Cc02_g20650 Coffea canephora HOM05D002753 ORTHO05D003097 1.7e-43 179.9 147 61.9
EL10Ac9g22119 Beta vulgaris HOM05D002753 ORTHO05D003097 3.8e-43 178.7 150 58.7
Lj4g0024024 Lotus japonicus HOM05D002753 ORTHO05D003097 1.1e-42 177.2 150 60.7
LjContig00139g0003532 Lotus japonicus HOM05D002753 ORTHO05D003097 1.1e-42 177.2 150 60.7
LjContig00139g0010456 Lotus japonicus HOM05D002753 ORTHO05D003097 1.1e-42 177.2 150 60.7
LjContig00139g0015911 Lotus japonicus HOM05D002753 ORTHO05D003097 1.1e-42 177.2 150 60.7
Sp6g33790 Schrenkiella parvula HOM05D002753 ORTHO05D003097 1.9e-42 176.4 150 60.0
Migut.B00526 Erythranthe guttata HOM05D002753 ORTHO05D003097 5.4e-42 174.9 152 58.6
Aqoxy6G00650 Aquilegia oxysepala HOM05D002753 ORTHO05D003097 7.1e-42 174.5 151 57.0
arahy.Tifrunner.gnm1.ann1.JKRU9X Arachis hypogaea HOM05D002753 ORTHO05D003097 2.1e-41 172.9 154 60.4
MBI16_g10443_MAGBIO Magnolia biondii HOM05D002753 ORTHO05D003097 2.1e-41 172.9 146 57.5
SGA_v2.0_scaffold32G12940 Striga asiatica HOM05D002753 ORTHO05D003097 2.1e-41 172.9 145 55.9
Gohir.A13G049800 Gossypium hirsutum HOM05D002753 ORTHO05D003097 2.7e-41 172.6 152 59.2
Lalb_Chr16g0383061 Lupinus albus HOM05D002753 ORTHO05D003097 2.7e-41 172.6 149 57.7
AT5G09580 Arabidopsis thaliana HOM05D002753 ORTHO05D003097 4.6e-41 171.8 152 58.6
Thhalv10013860m.g Eutrema salsugineum HOM05D002753 ORTHO05D003097 6.0e-41 171.4 149 58.4
AUR62030927 Chenopodium quinoa HOM05D002753 ORTHO05D003097 1.3e-40 170.2 157 54.8
HanXRQChr10g0291201 Helianthus annuus HOM05D002753 ORTHO05D003097 1.3e-40 170.2 148 54.7
Medtr1g053780 Medicago truncatula HOM05D002753 ORTHO05D003097 1.3e-40 170.2 152 57.9
Medtr1g054100 Medicago truncatula HOM05D002753 ORTHO05D003097 1.3e-40 170.2 152 57.9
Rhsim05G0097300 Rhododendron simsii HOM05D002753 ORTHO05D003097 1.7e-40 169.9 172 52.3
Ca_18410_v3 Cicer arietinum L. HOM05D002753 ORTHO05D003097 2.3e-40 169.5 152 56.6
Ciclev10029816m.g Citrus clementina HOM05D002753 ORTHO05D003097 2.3e-40 169.5 148 58.1
AL6G19990 Arabidopsis lyrata HOM05D002753 ORTHO05D003097 3.9e-40 168.7 152 59.2
Medtr4g092970 Medicago truncatula HOM05D002753 ORTHO05D003097 3.9e-40 168.7 152 57.2
Phvul.002G215600 Phaseolus vulgaris HOM05D002753 ORTHO05D003097 5.1e-40 168.3 147 59.9
AUR62027087 Chenopodium quinoa HOM05D002753 ORTHO05D003097 1.9e-39 166.4 148 55.4
Carub.0003s2766 Capsella rubella HOM05D002753 ORTHO05D003097 2.5e-39 166.0 158 55.7
Gohir.D13G048300 Gossypium hirsutum HOM05D002753 ORTHO05D003097 2.5e-39 166.0 151 57.6
Gorai.013G053900 Gossypium raimondii HOM05D002753 ORTHO05D003097 2.5e-39 166.0 151 57.6
Aa31LG3G17470 Aethionema arabicum HOM05D002753 ORTHO05D003097 7.3e-39 164.5 147 57.1
Psat7g103160 Pisum sativum HOM05D002753 ORTHO05D003097 7.3e-39 164.5 152 55.3
TPR.G16912 Trifolium pratense HOM05D002753 ORTHO05D003097 2.1e-38 162.9 142 59.2
A02p00030 Brassica napus HOM05D002753 ORTHO05D003097 2.8e-38 162.5 153 56.2
BraA02t04986Z Brassica rapa HOM05D002753 ORTHO05D003097 2.8e-38 162.5 153 56.2
Sc08g0004090 Simmondsia chinensis HOM05D002753 ORTHO05D003097 4.8e-38 161.8 155 53.5
BcaC03g13263 Brassica carinata HOM05D002753 ORTHO05D003097 8.1e-38 161.0 153 56.2
C02p03930 Brassica napus HOM05D002753 ORTHO05D003097 8.1e-38 161.0 153 56.2
BolC2t06356H Brassica oleracea HOM05D002753 ORTHO05D003097 8.1e-38 161.0 153 56.2
BcaB05g21545 Brassica carinata HOM05D002753 ORTHO05D003097 1.1e-37 160.6 153 54.9
PSO339G4496 Papaver somniferum HOM05D002753 ORTHO05D003097 1.5e-36 156.8 152 52.0
PSO339G2269 Papaver somniferum HOM05D002753 ORTHO05D003097 2.6e-36 156.0 152 51.3
PSO801G0587 Papaver somniferum HOM05D002753 ORTHO05D003097 3.8e-35 152.1 150 50.0
VMungo0251G0167 Vigna mungo HOM05D002753 ORTHO05D003097 4.9e-35 151.8 181 47.5
Atru.chr6.1339 Acer truncatum HOM05D002753 ORTHO05D003097 5.4e-34 148.3 115 63.5
Actinidia28019 Actinidia chinensis HOM05D002753 ORTHO05D003097 2.7e-33 146.0 122 58.2
Os11g0167200 Oryza sativa ssp. japonica HOM05D002753 ORTHO05D003097 1.5e-31 140.2 152 50.0
Solyc01g106190.4 Solanum lycopersicum HOM05D002753 ORTHO05D003097 9.0e-29 131.0 147 49.7
Zm00001eb202470 Zea mays HOM05D002753 ORTHO05D003097 7.6e-28 127.9 172 43.0
Actinidia29274 Actinidia chinensis HOM05D002753 ORTHO05D003097 1.3e-27 127.1 100 60.0
TPR.G36451 Trifolium pratense HOM05D002753 ORTHO05D003097 8.7e-24 114.4 174 40.8
Ah.01g024130 Amaranthus hybridus HOM05D002753 ORTHO05D003097 1.3e-22 110.5 151 43.0
unitig_0.g790 Utricularia gibba HOM05D002753 ORTHO05D003097 5.8e-20 101.7 145 40.0
Lj4g0007428 Lotus japonicus HOM05D002753 ORTHO05D003097 1.4e-18 97.1 102 55.9
Peaxi162Scf00016g03459 Petunia axillaris HOM05D002753 ORTHO05D003097 1.4e-18 97.1 149 37.6
Pp3c4_5290 Physcomitrium patens HOM05D002753 ORTHO05D003097 3.0e-16 89.4 125 37.6
Mapoly0044s0070 Marchantia polymorpha HOM05D002753 ORTHO05D003097 1.9e-15 86.7 121 36.4
CDE06G1140 Ceratophyllum demersum HOM05D002753 ORTHO05D003097 5.7e-15 85.1 63 60.3
TAR629G1083 Trochodendron aralioides HOM05D002753 ORTHO05D003097 8.2e-14 81.3 119 35.3
Aqoxy3G04117 Aquilegia oxysepala HOM05D002753 ORTHO05D003097 1.1e-13 80.9 122 37.7
SMO352G0025 Selaginella moellendorffii HOM05D002753 ORTHO05D003097 1.4e-13 80.5 127 32.3
PSO782G0438 Papaver somniferum HOM05D002753 ORTHO05D003097 3.1e-13 79.3 121 34.7
PSO063G3843 Papaver somniferum HOM05D002753 ORTHO05D003097 6.9e-13 78.2 121 33.9
Nitab4.5_0001180g0020 Nicotiana tabacum HOM05D002753 ORTHO05D003097 9.0e-13 77.8 126 34.1
Nitab4.5_0005200g0050 Nicotiana tabacum HOM05D002753 ORTHO05D003097 9.0e-13 77.8 119 35.3
CAN.G637.18 Capsicum annuum HOM05D002753 ORTHO05D003097 2.6e-12 76.3 119 34.5
Hund00392 Selenicereus undatus HOM05D002753 ORTHO05D003097 4.5e-12 75.5 85 45.9
Cpa.g.sc21.59 Carica papaya HOM05D002753 ORTHO05D003097 5.8e-12 75.1 123 32.5
AUR62013618 Chenopodium quinoa HOM05D002753 ORTHO05D003097 7.6e-12 74.7 121 33.9
PGR083G2063 Punica granatum HOM05D002753 ORTHO05D003097 1.0e-11 74.3 140 30.0
Sed0002549 Sechium edule HOM05D002753 ORTHO05D003097 1.0e-11 74.3 126 31.7
EL10Ac1g00940 Beta vulgaris HOM05D002753 ORTHO05D003097 1.3e-11 73.9 121 33.1
Ciclev10021011m.g Citrus clementina HOM05D002753 ORTHO05D003097 1.3e-11 73.9 147 31.3
HanXRQChr14g0428031 Helianthus annuus HOM05D002753 ORTHO05D003097 1.3e-11 73.9 120 33.3
RcHm_v2.0_Chr2g0118141 Rosa chinensis HOM05D002753 ORTHO05D003097 1.3e-11 73.9 49 69.4
PGSC0003DMG400031039 Solanum tuberosum HOM05D002753 ORTHO05D003097 1.3e-11 73.9 119 33.6
AUR62004230 Chenopodium quinoa HOM05D002753 ORTHO05D003097 1.7e-11 73.6 121 33.9
Cc04_g08920 Coffea canephora HOM05D002753 ORTHO05D003097 1.7e-11 73.6 121 33.1
Dinv30988 Davidia involucrata HOM05D002753 ORTHO05D003097 3.8e-11 72.4 131 31.3
SalBow5G1094 Salvia bowleyana HOM05D002753 ORTHO05D003097 3.8e-11 72.4 131 32.8
Carub.0001s4252 Capsella rubella HOM05D002753 ORTHO05D003097 6.5e-11 71.6 121 30.6
Lj2g0022789 Lotus japonicus HOM05D002753 ORTHO05D003097 8.4e-11 71.2 120 32.5
Oeu013927.4 Olea europaea HOM05D002753 ORTHO05D003097 8.4e-11 71.2 121 33.1
Eucgr.H00613 Eucalyptus grandis HOM05D002753 ORTHO05D003097 1.1e-10 70.9 140 30.7
Lsat_1_v5_gn_2_5161 Lactuca sativa HOM05D002753 ORTHO05D003097 1.1e-10 70.9 126 31.0
Solyc03g098180.3 Solanum lycopersicum HOM05D002753 ORTHO05D003097 1.1e-10 70.9 119 32.8
Actinidia18878 Actinidia chinensis HOM05D002753 ORTHO05D003097 1.4e-10 70.5 121 34.7
Sopen03g028880 Solanum pennellii HOM05D002753 ORTHO05D003097 1.4e-10 70.5 119 32.8
Lalb_Chr24g0398461 Lupinus albus HOM05D002753 ORTHO05D003097 1.9e-10 70.1 119 32.8
DCAR_010212 Daucus carota HOM05D002753 ORTHO05D003097 2.5e-10 69.7 119 31.1
Migut.O00244 Erythranthe guttata HOM05D002753 ORTHO05D003097 2.5e-10 69.7 120 32.5
Ca_18567_v3 Cicer arietinum L. HOM05D002753 ORTHO05D003097 3.2e-10 69.3 120 33.3
SGA_v2.0_scaffold90G27771 Striga asiatica HOM05D002753 ORTHO05D003097 3.2e-10 69.3 123 33.3
ATR0807G174 Amborella trichopoda HOM05D002753 ORTHO05D003097 4.2e-10 68.9 119 32.8
CANSAT01G0744 Cannabis sativa HOM05D002753 ORTHO05D003097 5.5e-10 68.6 128 32.0
ClCG04G012490 Citrullus lanatus HOM05D002753 ORTHO05D003097 5.5e-10 68.6 129 31.0
BcaB04g17086 Brassica carinata HOM05D002753 ORTHO05D003097 7.1e-10 68.2 126 28.6
Lj5C165G25 Lonicera japonica HOM05D002753 ORTHO05D003097 7.1e-10 68.2 126 29.4
CsaV3_1G005210 Cucumis sativus L. HOM05D002753 ORTHO05D003097 9.3e-10 67.8 129 29.5
THA.LOC104810434 Tarenaya hassleriana HOM05D002753 ORTHO05D003097 1.2e-09 67.4 121 30.6
CiPaw.16G101300 Carya illinoinensis HOM05D002753 ORTHO05D003097 1.6e-09 67.0 140 30.0
AL1G61830 Arabidopsis lyrata HOM05D002753 ORTHO05D003097 2.1e-09 66.6 121 29.8
Haze_18994 Corylus avellana HOM05D002753 ORTHO05D003097 2.1e-09 66.6 125 30.4
CARHR043570 Cardamine hirsuta HOM05D002753 ORTHO05D003097 2.7e-09 66.2 126 27.8
Sp1g39920 Schrenkiella parvula HOM05D002753 ORTHO05D003097 3.5e-09 65.9 121 28.9
TWI81G0128 Tripterygium wilfordii HOM05D002753 ORTHO05D003097 3.5e-09 65.9 121 30.6
Ah.05g175110 Amaranthus hybridus HOM05D002753 ORTHO05D003097 4.6e-09 65.5 126 30.2
MELO3C001960.2 Cucumis melo HOM05D002753 ORTHO05D003097 4.6e-09 65.5 129 29.5
Phvul.004G143000 Phaseolus vulgaris HOM05D002753 ORTHO05D003097 4.6e-09 65.5 120 32.5
Phvul.004G143200 Phaseolus vulgaris HOM05D002753 ORTHO05D003097 4.6e-09 65.5 120 32.5
arahy.Tifrunner.gnm1.ann1.305BSH Arachis hypogaea HOM05D002753 ORTHO05D003097 6.1e-09 65.1 119 31.1
Glyma.16G217500 Glycine max HOM05D002753 ORTHO05D003097 6.1e-09 65.1 120 31.7
A08p01620 Brassica napus HOM05D002753 ORTHO05D003097 7.9e-09 64.7 126 27.8
BraA08t32215Z Brassica rapa HOM05D002753 ORTHO05D003097 7.9e-09 64.7 126 27.8
Medtr6g477880 Medicago truncatula HOM05D002753 ORTHO05D003097 7.9e-09 64.7 123 34.1
VMungo0464G0886 Vigna mungo HOM05D002753 ORTHO05D003097 7.9e-09 64.7 147 29.3
Thhalv10011996m.g Eutrema salsugineum HOM05D002753 ORTHO05D003097 1.0e-08 64.3 126 27.8
Glyma.09G167500 Glycine max HOM05D002753 ORTHO05D003097 1.0e-08 64.3 120 31.7
BcaB02g10949 Brassica carinata HOM05D002753 ORTHO05D003097 1.3e-08 63.9 121 28.1
CBR_g4381 Chara braunii HOM05D002753 ORTHO05D000002 1.3e-08 63.9 127 33.9
arahy.Tifrunner.gnm1.ann1.V6QG6Q Arachis hypogaea HOM05D002753 ORTHO05D003097 1.8e-08 63.5 119 30.3
MD06G1236700 Malus domestica HOM05D002753 ORTHO05D003097 2.3e-08 63.2 125 29.6
TPR.G24091 Trifolium pratense HOM05D002753 ORTHO05D003097 2.3e-08 63.2 121 32.2
Aa31LG10G1790 Aethionema arabicum HOM05D002753 ORTHO05D003097 3.0e-08 62.8 126 28.6
Psat1g031520 Pisum sativum HOM05D002753 ORTHO05D003097 6.7e-08 61.6 121 33.1
Atru.BG.196.p Acer truncatum HOM05D002753 ORTHO05D003097 8.7e-08 61.2 121 28.1
SalBow5G3512 Salvia bowleyana HOM05D002753 ORTHO05D003097 1.1e-07 60.8 142 31.0
Manes.02G220100 Manihot esculenta HOM05D002753 ORTHO05D003097 1.5e-07 60.5 83 33.7
Prupe.5G241200 Prunus persica HOM05D002753 ORTHO05D003097 1.5e-07 60.5 135 28.9
ECA238G0832 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.5e-07 59.7 143 26.6
FAN18G3210 Fragaria x ananassa HOM05D002753 ORTHO05D003097 2.5e-07 59.7 148 25.0
Cfa020691 Carpinus fangiana HOM05D002753 ORTHO05D003097 9.7e-07 57.8 119 29.4
FvH4_5g18120 Fragaria vesca HOM05D002753 ORTHO05D003097 9.7e-07 57.8 119 26.9
FAN04G0651 Fragaria x ananassa HOM05D002753 ORTHO05D003097 9.7e-07 57.8 119 26.9
FAN13G0967 Fragaria x ananassa HOM05D002753 ORTHO05D003097 9.7e-07 57.8 119 26.9
FAN08G1509 Fragaria x ananassa HOM05D002753 ORTHO05D003097 2.2e-06 56.6 117 30.8


User provided reference genes

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