Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 2325.4 1290 100.0
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1618.2 1243 69.4
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1607.8 1234 68.6
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1589.3 1237 69.0
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1582.8 1278 66.0
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1575.5 1236 69.3
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1572.0 1238 68.1
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1569.7 1291 65.2
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1567.7 1238 68.8
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1564.7 1264 67.6
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1563.5 1243 67.1
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1553.9 1240 68.8
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1545.0 1256 67.0
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1542.7 1307 65.3
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1538.9 1247 67.0
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1537.3 1235 66.6
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1532.3 1224 67.5
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1527.7 1238 65.4
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1521.9 1188 67.5
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1521.1 1242 66.3
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1521.1 1293 63.5
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1520.8 1193 67.5
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1520.0 1244 65.4
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1516.1 1245 64.8
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1515.4 1293 63.5
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1511.1 1296 63.9
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1510.4 1181 66.8
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1510.0 1305 63.1
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1508.4 1241 65.0
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1505.3 1234 65.0
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1503.8 1276 65.4
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1503.4 1246 64.8
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1501.1 1181 67.5
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1500.7 1237 64.7
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1496.9 1239 65.2
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1496.5 1311 63.6
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1493.4 1230 65.2
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1491.9 1229 64.0
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1489.2 1243 65.5
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1488.0 1252 65.1
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1486.9 1250 65.7
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1485.7 1184 66.0
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1484.9 1291 63.4
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1479.5 1233 64.2
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1478.4 1254 65.0
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1478.0 1193 66.1
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1477.2 1189 67.0
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1476.1 1254 65.6
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1474.9 1233 65.1
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1471.4 1248 62.8
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1471.1 1237 65.0
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1469.5 1248 63.7
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1469.1 1239 63.8
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1467.2 1189 67.6
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1464.1 1252 62.5
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1458.0 1253 64.5
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1451.4 1243 63.2
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1435.2 1243 63.3
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1422.5 1242 62.2
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1410.2 1241 63.6
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1407.9 1245 62.3
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1402.1 1237 61.2
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1400.6 1200 63.7
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1393.6 1267 60.1
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1389.8 1237 60.7
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1382.1 1251 60.9
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1380.2 1238 60.6
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1380.2 1247 61.8
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1378.2 1226 61.6
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1377.1 1257 60.9
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1376.3 1262 60.1
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1374.8 1238 61.6
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1372.1 1251 61.1
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1370.9 1197 63.3
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1369.0 1243 61.3
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1368.2 1243 61.3
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1363.6 1176 62.8
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1361.7 1179 62.3
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1356.3 1202 62.1
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1353.6 1200 62.0
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1349.7 1275 59.3
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1345.9 1263 59.5
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1344.3 1261 60.5
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1340.9 1197 62.8
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1340.9 1197 62.8
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1333.5 1299 58.0
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1330.1 1204 61.9
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1326.2 1200 62.0
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1313.1 1229 60.2
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1302.7 1258 57.6
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1288.5 1081 64.2
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1288.1 1246 57.7
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1281.9 1271 57.4
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1271.5 1176 59.6
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1220.3 1230 57.4
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1179.1 1239 53.6
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1169.1 1230 53.3
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1138.6 1234 52.5
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 0.0e+00 1133.2 1230 50.0
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1124.4 1227 53.4
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 0.0e+00 1122.1 1295 49.4
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1120.1 948 65.9
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 0.0e+00 1115.9 1186 52.0
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 0.0e+00 1104.0 1072 59.3
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 0.0e+00 1075.5 1267 48.5
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 3.3e-293 1012.3 1228 48.3
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 2.8e-292 1009.2 1240 47.6
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 7.4e-285 984.6 746 68.6
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 1.2e-255 887.5 1238 45.8
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 1.3e-252 877.5 653 72.1
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 9.9e-221 771.5 1110 42.4
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 2.7e-186 657.1 539 69.0
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 1.6e-162 578.2 432 68.5
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 1.8e-161 574.7 451 68.5
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 1.1e-158 565.5 447 70.0
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 1.1e-155 555.4 686 54.1
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 9.8e-152 542.3 835 45.3
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 5.0e-148 530.0 1198 32.9
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.2e-146 525.4 1209 32.8
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 1.6e-146 525.0 1202 32.9
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 3.6e-146 523.9 1195 34.1
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 1.4e-134 485.3 611 46.5
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 2.4e-134 484.6 1175 32.9
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 6.0e-125 453.4 1155 30.7
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 1.7e-111 408.7 1048 32.8
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 5.1e-108 397.1 1318 29.1
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 7.1e-102 376.7 1042 32.0
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 4.5e-88 330.9 331 56.2
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 6.3e-74 283.9 245 62.9
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 1.9e-70 272.3 482 37.8
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 7.2e-70 270.4 482 37.8
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 4.4e-43 181.4 219 47.9
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 2.2e-42 179.1 1243 23.2
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 4.5e-40 171.4 1236 24.6
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 8.0e-29 134.0 129 51.2
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 4.0e-28 131.7 139 56.1
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 7.5e-27 127.5 350 28.9
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 1.7e-26 126.3 201 39.8
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 1.7e-26 126.3 83 72.3
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 3.6e-21 108.6 198 36.4
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.1e-17 97.1 57 78.9
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 3.2e-17 95.5 61 77.0
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 5.9e-16 91.3 73 58.9
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 1.7e-15 89.7 73 63.0
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 5.0e-15 88.2 71 57.7
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 3.3e-14 85.5 72 56.9
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 3.3e-14 85.5 111 50.5
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 4.3e-14 85.1 119 42.0
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 1.1e-12 80.5 53 73.6
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 1.1e-12 80.5 53 73.6
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 5.8e-11 74.7 84 39.3
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 5.4e-09 68.2 191 31.9
Cfa025397 Carpinus fangiana HOM05D004672 ORTHO05D126383 2.0e-08 66.2 390 23.6
arahy.Tifrunner.gnm1.ann1.F8N9WK Arachis hypogaea HOM05D000158 ORTHO05D000197 1.9e-06 59.7 76 47.4
Zm00001eb132650 Zea mays HOM05D004672 ORTHO05D005732 1.9e-06 59.7 50 58.0
Ah.01g011940 Amaranthus hybridus HOM05D004672 ORTHO05D005732 2.5e-06 59.3 40 65.0


User provided reference genes

Program Settings