Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02454 Eucalyptus grandis HOM05D003234 ORTHO05D003635 3.5e-52 208.0 103 100.0
CiPaw.02G016600 Carya illinoinensis HOM05D003234 ORTHO05D003635 2.2e-22 109.0 105 56.2
Manes.01G134700 Manihot esculenta HOM05D003234 ORTHO05D003635 4.9e-22 107.8 105 56.2
Ciclev10026821m.g Citrus clementina HOM05D003234 ORTHO05D003635 6.4e-22 107.5 105 54.3
CSS0031108 Camellia sinensis var. sinensis HOM05D003234 ORTHO05D003635 3.2e-21 105.1 102 51.0
GSVIVG01018978001 Vitis vinifera HOM05D003234 ORTHO05D003635 2.7e-20 102.1 105 54.3
Migut.H00998 Erythranthe guttata HOM05D003234 ORTHO05D003635 6.0e-20 100.9 105 50.5
Gorai.011G102100 Gossypium raimondii HOM05D003234 ORTHO05D003635 6.0e-20 100.9 105 52.4
Gohir.A10G095000 Gossypium hirsutum HOM05D003234 ORTHO05D003635 1.3e-19 99.8 105 52.4
Cc07_g09430 Coffea canephora HOM05D003234 ORTHO05D003635 3.0e-19 98.6 103 52.4
Gohir.D10G092900 Gossypium hirsutum HOM05D003234 ORTHO05D003635 6.6e-19 97.4 105 51.4
Gohir.D12G065100 Gossypium hirsutum HOM05D003234 ORTHO05D003635 8.7e-19 97.1 105 47.6
Gorai.008G068300 Gossypium raimondii HOM05D003234 ORTHO05D003635 8.7e-19 97.1 105 47.6
Thecc.01G037000 Theobroma cacao HOM05D003234 ORTHO05D003635 8.7e-19 97.1 105 51.4
MSTRG.23532 Avicennia marina HOM05D003234 ORTHO05D003635 1.1e-18 96.7 105 47.6
Actinidia12120 Actinidia chinensis HOM05D003234 ORTHO05D003635 2.5e-18 95.5 105 49.5
Hma1.2p1_0717F.1_g208130 Hydrangea macrophylla HOM05D003234 ORTHO05D003635 2.5e-18 95.5 102 50.0
CAN.G358.101 Capsicum annuum HOM05D003234 ORTHO05D003635 4.3e-18 94.7 103 49.5
Sopen02g030060 Solanum pennellii HOM05D003234 ORTHO05D003635 9.6e-18 93.6 103 49.5
TPR.G34985 Trifolium pratense HOM05D003234 ORTHO05D003635 9.6e-18 93.6 103 50.5
Atru.chr3.563 Acer truncatum HOM05D003234 ORTHO05D003635 3.6e-17 91.7 105 48.6
Actinidia36555 Actinidia chinensis HOM05D003234 ORTHO05D003635 3.6e-17 91.7 105 47.6
ECA246G3301 Erigeron canadensis HOM05D003234 ORTHO05D003635 1.4e-16 89.7 106 49.1
Lalb_Chr09g0322471 Lupinus albus HOM05D003234 ORTHO05D003635 1.8e-16 89.4 103 48.5
unitig_21.g20955 Utricularia gibba HOM05D003234 ORTHO05D003635 2.4e-16 89.0 102 47.1
Lsat_1_v5_gn_3_77600 Lactuca sativa HOM05D003234 ORTHO05D003635 4.0e-16 88.2 102 46.1
Glyma.11G067600 Glycine max HOM05D003234 ORTHO05D003635 5.3e-16 87.8 103 49.5
CANSAT01G1184 Cannabis sativa HOM05D003234 ORTHO05D003635 9.0e-16 87.0 106 50.9
Glyma.01G175400 Glycine max HOM05D003234 ORTHO05D003635 9.0e-16 87.0 103 48.5
Psat4g092120 Pisum sativum HOM05D003234 ORTHO05D003635 1.5e-15 86.3 103 49.5
SGA_v2.0_scaffold276G46636 Striga asiatica HOM05D003234 ORTHO05D003635 1.5e-15 86.3 124 40.3
HanXRQChr15g0482261 Helianthus annuus HOM05D003234 ORTHO05D003635 7.6e-15 84.0 105 46.7
Nn1g05018 Nelumbo nucifera HOM05D003234 ORTHO05D003635 3.8e-14 81.6 107 47.7
Lj4g0023984 Lotus japonicus HOM05D003234 ORTHO05D003635 6.4e-14 80.9 103 45.6
Aqoxy5G01648 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 1.1e-13 80.1 102 44.1
ATR0733G120 Amborella trichopoda HOM05D003234 ORTHO05D003635 1.4e-13 79.7 106 44.3
Phvul.002G029601 Phaseolus vulgaris HOM05D003234 ORTHO05D003635 1.9e-13 79.3 103 44.7
Dinv26826 Davidia involucrata HOM05D003234 ORTHO05D003635 3.5e-12 75.1 53 67.9
arahy.Tifrunner.gnm1.ann1.F5AS58 Arachis hypogaea HOM05D003234 ORTHO05D003635 6.0e-12 74.3 103 45.6
arahy.Tifrunner.gnm1.ann1.WI3JHU Arachis hypogaea HOM05D003234 ORTHO05D003635 6.0e-12 74.3 103 45.6
Dinv39975 Davidia involucrata HOM05D003234 ORTHO05D003635 1.0e-11 73.6 102 44.1
Zm00001eb009770 Zea mays HOM05D003234 ORTHO05D003635 1.0e-11 73.6 107 47.7
Migut.L00515 Erythranthe guttata HOM05D003234 ORTHO05D003635 1.1e-10 70.1 105 37.1
Aqoxy6G01093 Aquilegia oxysepala HOM05D003234 ORTHO05D003635 9.6e-10 67.0 107 42.1
CDE04G0975 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 2.8e-09 65.5 60 51.7
Gohir.A12G065000 Gossypium hirsutum HOM05D003234 ORTHO05D003635 4.8e-09 64.7 105 38.1
CDE02G3043 Ceratophyllum demersum HOM05D003234 ORTHO05D003635 9.0e-08 60.5 53 52.8
QL06p045796 Quercus lobata HOM05D003234 ORTHO05D003635 1.2e-07 60.1 36 72.2
SEGI_11040 Sequoiadendron giganteum HOM05D003234 ORTHO05D003635 1.2e-07 60.1 106 35.8
Sed0016414 Sechium edule HOM05D003234 ORTHO05D003635 4.5e-07 58.2 107 34.6
Migut.C00924 Erythranthe guttata HOM05D003234 ORTHO05D003635 5.8e-07 57.8 107 35.5
MELO3C026549.2 Cucumis melo HOM05D003234 ORTHO05D003635 2.9e-06 55.5 107 32.7
CsaV3_6G031700 Cucumis sativus L. HOM05D003234 ORTHO05D003635 2.9e-06 55.5 107 32.7
Peaxi162Scf00515g00521 Petunia axillaris HOM05D003234 ORTHO05D003635 2.9e-06 55.5 68 47.1
Psat0s3811g0040 Pisum sativum HOM05D003234 ORTHO05D003635 2.9e-06 55.5 108 36.1
ClCG08G009600 Citrullus lanatus HOM05D003234 ORTHO05D003635 3.8e-06 55.1 107 32.7
FvH4_2g37670 Fragaria vesca HOM05D003234 ORTHO05D003635 3.8e-06 55.1 107 33.6
Gohir.A02G083600 Gossypium hirsutum HOM05D003234 ORTHO05D003635 3.8e-06 55.1 107 33.6
ClCG00G002880 Citrullus lanatus HOM05D003234 ORTHO05D003635 4.9e-06 54.7 106 32.1
Sed0012631 Sechium edule HOM05D003234 ORTHO05D003635 4.9e-06 54.7 107 32.7
Gohir.D02G099100 Gossypium hirsutum HOM05D003234 ORTHO05D003635 6.4e-06 54.3 107 33.6
MD08G1004300 Malus domestica HOM05D003234 ORTHO05D003635 6.4e-06 54.3 108 33.3
SGA_v2.0_scaffold275G46578 Striga asiatica HOM05D003234 ORTHO05D003635 6.4e-06 54.3 107 34.6
Nitab4.5_0007869g0020 Nicotiana tabacum HOM05D003234 ORTHO05D003635 8.4e-06 53.9 107 31.8
Prupe.1G356200 Prunus persica HOM05D003234 ORTHO05D003635 8.4e-06 53.9 107 33.6


User provided reference genes

Program Settings