Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02410 Eucalyptus grandis HOM05D001749 ORTHO05D001632 7.3e-120 434.1 253 100.0
Manes.02G096700 Manihot esculenta HOM05D001749 ORTHO05D001632 1.6e-26 124.0 272 36.8
Cfa004342 Carpinus fangiana HOM05D001749 ORTHO05D001632 3.2e-22 109.8 261 34.9
Gohir.A11G182600 Gossypium hirsutum HOM05D001749 ORTHO05D001632 3.2e-22 109.8 240 37.1
Gorai.007G201500 Gossypium raimondii HOM05D001749 ORTHO05D001632 3.2e-22 109.8 240 38.8
Cpa.g.sc1139.1 Carica papaya HOM05D001749 ORTHO05D001632 5.4e-22 109.0 257 33.9
MD02G1143400 Malus domestica HOM05D001749 ORTHO05D001632 2.7e-21 106.7 256 36.3
Duzib187G2007 Durio zibethinus HOM05D001749 ORTHO05D001632 3.5e-21 106.3 251 36.3
Duzib147G1275 Durio zibethinus HOM05D001749 ORTHO05D001632 4.6e-21 105.9 263 38.4
Gohir.D11G189200 Gossypium hirsutum HOM05D001749 ORTHO05D001632 4.6e-21 105.9 240 37.9
PGR119G0350 Punica granatum HOM05D001749 ORTHO05D001632 1.0e-20 104.8 264 34.8
Thecc.01G031200 Theobroma cacao HOM05D001749 ORTHO05D001632 2.3e-20 103.6 241 39.8
CiPaw.02G020500 Carya illinoinensis HOM05D001749 ORTHO05D001632 3.9e-20 102.8 233 36.5
Prupe.7G158300 Prunus persica HOM05D001749 ORTHO05D001632 8.6e-20 101.7 254 34.6
Haze_15059 Corylus avellana HOM05D001749 ORTHO05D001632 1.1e-19 101.3 236 39.0
Gohir.A12G063300 Gossypium hirsutum HOM05D001749 ORTHO05D001632 1.5e-19 100.9 262 39.3
Actinidia19200 Actinidia chinensis HOM05D001749 ORTHO05D001632 1.9e-19 100.5 237 35.4
CSS0042795 Camellia sinensis var. sinensis HOM05D001749 ORTHO05D001632 3.3e-19 99.8 258 32.9
Gohir.D12G063200 Gossypium hirsutum HOM05D001749 ORTHO05D001632 4.3e-19 99.4 260 35.8
TWI73G0715 Tripterygium wilfordii HOM05D001749 ORTHO05D001632 7.3e-19 98.6 265 33.6
Gohir.A10G096200 Gossypium hirsutum HOM05D001749 ORTHO05D001632 9.5e-19 98.2 259 35.9
CiPaw.01G045700 Carya illinoinensis HOM05D001749 ORTHO05D001632 2.8e-18 96.7 241 38.6
QL06p047145 Quercus lobata HOM05D001749 ORTHO05D001632 2.8e-18 96.7 228 32.5
COL.COLO4_22034 Corchorus olitorius HOM05D001749 ORTHO05D001632 3.6e-18 96.3 253 33.6
Gorai.011G100900 Gossypium raimondii HOM05D001749 ORTHO05D001632 3.6e-18 96.3 255 33.7
Hma1.2p1_0224F.1_g094445 Hydrangea macrophylla HOM05D001749 ORTHO05D001632 3.6e-18 96.3 256 30.5
Hma1.2p1_2993F.1_g331370 Hydrangea macrophylla HOM05D001749 ORTHO05D001632 3.6e-18 96.3 256 30.5
RcHm_v2.0_Chr2g0100901 Rosa chinensis HOM05D001749 ORTHO05D001632 4.7e-18 95.9 267 34.5
Gorai.008G066400 Gossypium raimondii HOM05D001749 ORTHO05D001632 8.1e-18 95.1 252 35.3
Rhsim08G0119900 Rhododendron simsii HOM05D001749 ORTHO05D001632 8.1e-18 95.1 251 35.5
CsaV3_4G005530 Cucumis sativus L. HOM05D001749 ORTHO05D001632 2.4e-17 93.6 246 32.9
Gohir.D10G091900 Gossypium hirsutum HOM05D001749 ORTHO05D001632 2.4e-17 93.6 255 33.3
Cc07_g09890 Coffea canephora HOM05D001749 ORTHO05D001632 4.0e-17 92.8 231 34.2
CsaV3_6G046480 Cucumis sativus L. HOM05D001749 ORTHO05D001632 1.2e-16 91.3 244 31.6
Nitab4.5_0001617g0020 Nicotiana tabacum HOM05D001749 ORTHO05D001632 3.4e-16 89.7 241 32.8
FAN28G1045 Fragaria x ananassa HOM05D001749 ORTHO05D001632 4.4e-16 89.4 252 34.9
Potri.007G021500 Populus trichocarpa HOM05D001749 ORTHO05D001632 4.4e-16 89.4 279 30.5
CSS0035839 Camellia sinensis var. sinensis HOM05D001749 ORTHO05D001632 7.6e-16 88.6 256 30.9
TAR628G1444 Trochodendron aralioides HOM05D001749 ORTHO05D001632 7.6e-16 88.6 260 31.2
ClCG01G019770 Citrullus lanatus HOM05D001749 ORTHO05D001632 9.9e-16 88.2 242 33.5
Nitab4.5_0003001g0010 Nicotiana tabacum HOM05D001749 ORTHO05D001632 9.9e-16 88.2 247 32.4
ClCG07G008620 Citrullus lanatus HOM05D001749 ORTHO05D001632 1.7e-15 87.4 252 32.5
CAN.G358.46 Capsicum annuum HOM05D001749 ORTHO05D001632 2.2e-15 87.0 247 32.4
MELO3C016396.2 Cucumis melo HOM05D001749 ORTHO05D001632 2.9e-15 86.7 247 31.2
FvH4_1g12780 Fragaria vesca HOM05D001749 ORTHO05D001632 2.9e-15 86.7 251 33.1
Nn1g04912 Nelumbo nucifera HOM05D001749 ORTHO05D001632 2.9e-15 86.7 258 33.7
Sed0010817 Sechium edule HOM05D001749 ORTHO05D001632 3.8e-15 86.3 237 31.6
TAR381G0807 Trochodendron aralioides HOM05D001749 ORTHO05D001632 3.8e-15 86.3 253 31.6
FAN19G1879 Fragaria x ananassa HOM05D001749 ORTHO05D001632 6.4e-15 85.5 251 33.1
THA.LOC104819200 Tarenaya hassleriana HOM05D001749 ORTHO05D001632 6.4e-15 85.5 261 31.0
BcaNung05716 Brassica carinata HOM05D001749 ORTHO05D001632 8.4e-15 85.1 254 29.5
MBI10_g06727_MAGBIO Magnolia biondii HOM05D001749 ORTHO05D001632 8.4e-15 85.1 254 31.1
Glyma.02G054400 Glycine max HOM05D001749 ORTHO05D001632 1.1e-14 84.7 229 34.9
MELO3C007844.2 Cucumis melo HOM05D001749 ORTHO05D001632 1.4e-14 84.3 253 33.6
Nn5g29676 Nelumbo nucifera HOM05D001749 ORTHO05D001632 1.9e-14 84.0 254 31.1
Aa31LG1G14960 Aethionema arabicum HOM05D001749 ORTHO05D001632 4.1e-14 82.8 260 28.5
FAN26G1634 Fragaria x ananassa HOM05D001749 ORTHO05D001632 5.4e-14 82.4 246 32.9
Glyma.16G134800 Glycine max HOM05D001749 ORTHO05D001632 5.4e-14 82.4 233 33.5
Sp2g30290 Schrenkiella parvula HOM05D001749 ORTHO05D001632 5.4e-14 82.4 245 31.4
Solyc03g033860.1 Solanum lycopersicum HOM05D001749 ORTHO05D001632 9.2e-14 81.6 231 32.0
A07p17520 Brassica napus HOM05D001749 ORTHO05D001632 2.7e-13 80.1 259 29.3
BraA07t29472Z Brassica rapa HOM05D001749 ORTHO05D001632 2.7e-13 80.1 259 29.3
Nitab4.5_0000344g0170 Nicotiana tabacum HOM05D001749 ORTHO05D001632 3.5e-13 79.7 239 31.8
Sabra07G0018500 Salix brachista HOM05D001749 ORTHO05D001632 3.5e-13 79.7 282 28.4
PGSC0003DMG400003523 Solanum tuberosum HOM05D001749 ORTHO05D001632 3.5e-13 79.7 246 31.3
BcaC04g23126 Brassica carinata HOM05D001749 ORTHO05D001632 4.6e-13 79.3 257 29.2
BolC9t54075H Brassica oleracea HOM05D001749 ORTHO05D001632 4.6e-13 79.3 257 29.2
Ca_22298_v3 Cicer arietinum L. HOM05D001749 ORTHO05D001632 6.0e-13 79.0 221 32.1
Ca_22328_v3 Cicer arietinum L. HOM05D001749 ORTHO05D001632 6.0e-13 79.0 221 32.1
HanXRQChr09g0261391 Helianthus annuus HOM05D001749 ORTHO05D001632 6.0e-13 79.0 251 32.7
Dinv40015 Davidia involucrata HOM05D001749 ORTHO05D001632 7.8e-13 78.6 247 28.3
Sopen02g029630 Solanum pennellii HOM05D001749 ORTHO05D001632 7.8e-13 78.6 244 29.5
Oeu023336.1 Olea europaea HOM05D001749 ORTHO05D001632 1.0e-12 78.2 256 29.3
PGSC0003DMG400022575 Solanum tuberosum HOM05D001749 ORTHO05D001632 1.0e-12 78.2 235 31.5
DCAR_025960 Daucus carota HOM05D001749 ORTHO05D001632 1.3e-12 77.8 245 30.2
Nitab4.5_0011923g0020 Nicotiana tabacum HOM05D001749 ORTHO05D001632 1.3e-12 77.8 239 32.2
THA.LOC104826664 Tarenaya hassleriana HOM05D001749 ORTHO05D001632 1.3e-12 77.8 262 28.6
Solyc02g084960.1 Solanum lycopersicum HOM05D001749 ORTHO05D001632 1.7e-12 77.4 243 31.3
Sopen03g006620 Solanum pennellii HOM05D001749 ORTHO05D001632 1.7e-12 77.4 243 29.2
Lalb_Chr16g0391051 Lupinus albus HOM05D001749 ORTHO05D001632 2.3e-12 77.0 246 29.3
BcaC06g34702 Brassica carinata HOM05D001749 ORTHO05D001632 3.0e-12 76.6 259 29.7
FAN23G0952 Fragaria x ananassa HOM05D001749 ORTHO05D001632 3.0e-12 76.6 242 31.0
Potri.005G120300 Populus trichocarpa HOM05D001749 ORTHO05D001632 5.1e-12 75.9 277 27.4
Lj2P456T45 Lonicera japonica HOM05D001749 ORTHO05D001632 6.6e-12 75.5 254 35.8
MBI16_g08780_MAGBIO Magnolia biondii HOM05D001749 ORTHO05D001632 6.6e-12 75.5 252 28.6
C07p25470 Brassica napus HOM05D001749 ORTHO05D001632 8.7e-12 75.1 251 29.1
Carub.0008s2808 Capsella rubella HOM05D001749 ORTHO05D001632 8.7e-12 75.1 250 30.8
ECA232G4251 Erigeron canadensis HOM05D001749 ORTHO05D001632 8.7e-12 75.1 249 28.5
Lj4g0011278 Lotus japonicus HOM05D001749 ORTHO05D001632 8.7e-12 75.1 252 33.7
Sabra05G0099000 Salix brachista HOM05D001749 ORTHO05D001632 8.7e-12 75.1 267 30.3
VMungo0251G1101 Vigna mungo HOM05D001749 ORTHO05D001632 2.5e-11 73.6 243 32.9
BolC7t43068H Brassica oleracea HOM05D001749 ORTHO05D001632 4.3e-11 72.8 259 29.0
Dinv13495 Davidia involucrata HOM05D001749 ORTHO05D001632 4.3e-11 72.8 206 31.1
Psat4g095000 Pisum sativum HOM05D001749 ORTHO05D001632 4.3e-11 72.8 236 29.7
CANSAT01G2116 Cannabis sativa HOM05D001749 ORTHO05D001632 5.6e-11 72.4 257 26.8
Sc03g0003140 Simmondsia chinensis HOM05D001749 ORTHO05D001632 9.6e-11 71.6 221 33.5
Aa31LG4G19030 Aethionema arabicum HOM05D001749 ORTHO05D001632 1.2e-10 71.2 279 27.2
Sp5g11300 Schrenkiella parvula HOM05D001749 ORTHO05D001632 1.2e-10 71.2 247 29.1
Thhalv10004766m.g Eutrema salsugineum HOM05D001749 ORTHO05D001632 1.6e-10 70.9 276 26.4
HanXRQChr11g0325491 Helianthus annuus HOM05D001749 ORTHO05D001632 2.1e-10 70.5 257 28.4
Sed0004351 Sechium edule HOM05D001749 ORTHO05D001632 2.1e-10 70.5 245 32.7
AT5G66440 Arabidopsis thaliana HOM05D001749 ORTHO05D001632 2.8e-10 70.1 273 26.0
THA.LOC104818171 Tarenaya hassleriana HOM05D001749 ORTHO05D001632 2.8e-10 70.1 258 29.5
TPR.G14237 Trifolium pratense HOM05D001749 ORTHO05D001632 3.6e-10 69.7 249 27.7
Aqoxy6G01165 Aquilegia oxysepala HOM05D001749 ORTHO05D001632 8.1e-10 68.6 264 29.9
EL10As8g23912 Beta vulgaris HOM05D001749 ORTHO05D001632 8.1e-10 68.6 238 30.7
Migut.H02524 Erythranthe guttata HOM05D001749 ORTHO05D001632 8.1e-10 68.6 218 31.7
Thhalv10010637m.g Eutrema salsugineum HOM05D001749 ORTHO05D001632 8.1e-10 68.6 266 25.9
Peaxi162Scf00010g00116 Petunia axillaris HOM05D001749 ORTHO05D001632 1.1e-09 68.2 225 29.3
AL5G31290 Arabidopsis lyrata HOM05D001749 ORTHO05D001632 2.4e-09 67.0 259 31.7
CARHR281310 Cardamine hirsuta HOM05D001749 ORTHO05D001632 4.0e-09 66.2 265 25.3
AUR62004089 Chenopodium quinoa HOM05D001749 ORTHO05D001632 4.0e-09 66.2 242 30.2
BcaB02g10030 Brassica carinata HOM05D001749 ORTHO05D001632 5.2e-09 65.9 260 28.5
Medtr8g077085 Medicago truncatula HOM05D001749 ORTHO05D001632 5.2e-09 65.9 244 29.1
BcaC09g50057 Brassica carinata HOM05D001749 ORTHO05D001632 1.5e-08 64.3 244 28.7
C01p29520 Brassica napus HOM05D001749 ORTHO05D001632 2.0e-08 63.9 244 28.7
BolC1t02894H Brassica oleracea HOM05D001749 ORTHO05D001632 2.0e-08 63.9 244 28.7
BcaC07g39561 Brassica carinata HOM05D001749 ORTHO05D001632 3.4e-08 63.2 234 27.8
Phvul.003G255700 Phaseolus vulgaris HOM05D001749 ORTHO05D001632 3.4e-08 63.2 231 30.7
BraA01t02289Z Brassica rapa HOM05D001749 ORTHO05D001632 4.4e-08 62.8 244 27.9
Psat2g157560 Pisum sativum HOM05D001749 ORTHO05D001632 4.4e-08 62.8 245 29.0
QL11p044367 Quercus lobata HOM05D001749 ORTHO05D001632 4.4e-08 62.8 235 27.2
A01p23800 Brassica napus HOM05D001749 ORTHO05D001632 5.8e-08 62.4 244 27.9
MBI16_g30353_MAGBIO Magnolia biondii HOM05D001749 ORTHO05D001632 7.6e-08 62.0 246 27.6
Aqoxy5G01581 Aquilegia oxysepala HOM05D001749 ORTHO05D001632 9.9e-08 61.6 270 26.7
ATR0568G223 Amborella trichopoda HOM05D001749 ORTHO05D001632 1.7e-07 60.8 255 28.2
AUR62007601 Chenopodium quinoa HOM05D001749 ORTHO05D001632 1.7e-07 60.8 250 30.4
Potri.004G157300 Populus trichocarpa HOM05D001749 ORTHO05D001632 1.7e-07 60.8 250 26.4
CiPaw.06G133900 Carya illinoinensis HOM05D001749 ORTHO05D001632 2.2e-07 60.5 256 25.0
Dinv23498 Davidia involucrata HOM05D001749 ORTHO05D001632 2.2e-07 60.5 238 26.9
GSVIVG01018920001 Vitis vinifera HOM05D001749 ORTHO05D001632 2.9e-07 60.1 259 28.2
C08p26160 Brassica napus HOM05D001749 ORTHO05D001632 3.8e-07 59.7 234 27.4
Ah.03g141140 Amaranthus hybridus HOM05D001749 ORTHO05D001632 4.9e-07 59.3 227 28.2
AL8G45100 Arabidopsis lyrata HOM05D001749 ORTHO05D001632 4.9e-07 59.3 270 27.8
C09p11860 Brassica napus HOM05D001749 ORTHO05D001632 4.9e-07 59.3 267 25.8
MD05G1064000 Malus domestica HOM05D001749 ORTHO05D001632 4.9e-07 59.3 251 28.3
Manes.11G085200 Manihot esculenta HOM05D001749 ORTHO05D001632 4.9e-07 59.3 250 24.0
VMungo1215G0703 Vigna mungo HOM05D001749 ORTHO05D001632 4.9e-07 59.3 226 27.4
Haze_02350 Corylus avellana HOM05D001749 ORTHO05D001632 6.4e-07 58.9 218 28.9
A09p44040 Brassica napus HOM05D001749 ORTHO05D001632 8.4e-07 58.5 239 27.2
BraA09t39862Z Brassica rapa HOM05D001749 ORTHO05D001632 8.4e-07 58.5 239 27.2
Atru.chr5.3055 Acer truncatum HOM05D001749 ORTHO05D001632 1.1e-06 58.2 238 25.6
MD10G1072700 Malus domestica HOM05D001749 ORTHO05D001632 1.1e-06 58.2 244 26.2
BcaB01g00565 Brassica carinata HOM05D001749 ORTHO05D001632 1.4e-06 57.8 240 28.8
CAN.G1336.2 Capsicum annuum HOM05D001749 ORTHO05D001632 1.4e-06 57.8 282 26.2
PSO541G5621 Papaver somniferum HOM05D001749 ORTHO05D001632 1.4e-06 57.8 270 25.2
MELO3C023313.2 Cucumis melo HOM05D001749 ORTHO05D001632 1.9e-06 57.4 238 25.2
BcaB05g23254 Brassica carinata HOM05D001749 ORTHO05D001632 2.4e-06 57.0 240 28.3
BcaB05g23255 Brassica carinata HOM05D001749 ORTHO05D001632 2.4e-06 57.0 240 28.3
Sabra09G0091300 Salix brachista HOM05D001749 ORTHO05D001632 3.2e-06 56.6 253 24.1
Cfa005037 Carpinus fangiana HOM05D001749 ORTHO05D001632 4.2e-06 56.2 241 27.8
FvH4_2g09200 Fragaria vesca HOM05D001749 ORTHO05D001632 4.2e-06 56.2 245 25.3
FAN24G3069 Fragaria x ananassa HOM05D001749 ORTHO05D001632 4.2e-06 56.2 245 25.3
SGA_v2.0_scaffold12G06315 Striga asiatica HOM05D001749 ORTHO05D001632 4.2e-06 56.2 221 33.9
TAR625G0803 Trochodendron aralioides HOM05D001749 ORTHO05D001632 4.2e-06 56.2 246 26.0
BraA09t36645Z Brassica rapa HOM05D001749 ORTHO05D001632 5.4e-06 55.8 269 26.0
Medtr5g020900 Medicago truncatula HOM05D001749 ORTHO05D001632 5.4e-06 55.8 239 27.6
Potri.009G119000 Populus trichocarpa HOM05D001749 ORTHO05D001632 7.1e-06 55.5 239 23.8
TWI79G0729 Tripterygium wilfordii HOM05D001749 ORTHO05D001632 7.1e-06 55.5 247 23.9
Lj4P518T39 Lonicera japonica HOM05D001749 ORTHO05D001632 9.3e-06 55.1 101 35.6


User provided reference genes

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