Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 0.0e+00 1212.2 693 100.0
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 7.0e-197 691.4 678 60.6
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 2.9e-195 686.0 685 61.6
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 3.8e-195 685.6 719 60.8
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 7.2e-194 681.4 730 60.5
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 1.6e-193 680.2 666 59.8
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.0e-192 677.6 647 60.1
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 1.8e-192 676.8 716 58.0
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 1.8e-192 676.8 716 58.0
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 1.8e-192 676.8 712 61.0
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 3.4e-191 672.5 682 61.7
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 5.7e-191 671.8 661 59.3
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 4.8e-190 668.7 719 60.5
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 4.8e-190 668.7 703 59.5
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 2.7e-188 662.9 670 60.0
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 3.3e-186 656.0 670 58.1
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 3.7e-182 642.5 750 55.2
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 7.0e-181 638.3 736 57.9
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 2.9e-179 632.9 740 57.4
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 1.1e-178 630.9 756 54.0
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 5.6e-178 628.6 722 53.9
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 9.5e-178 627.9 679 57.4
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 1.6e-177 627.1 747 51.5
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 3.6e-177 625.9 711 53.9
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 6.1e-177 625.2 668 61.1
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 6.1e-177 625.2 745 55.8
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 2.3e-176 623.2 657 60.7
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 6.8e-176 621.7 713 56.5
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 3.4e-175 619.4 734 56.1
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 9.8e-175 617.8 706 56.1
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 2.4e-173 613.2 680 53.1
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 4.1e-173 612.5 722 57.5
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 2.3e-171 606.7 684 57.2
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 9.5e-170 601.3 743 54.0
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 1.1e-168 597.8 734 57.1
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 5.2e-168 595.5 663 58.2
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 1.2e-167 594.3 727 53.9
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 5.8e-167 592.0 755 52.6
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 1.4e-165 587.4 717 54.0
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 2.4e-165 586.6 759 53.1
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 9.2e-165 584.7 669 53.5
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 1.7e-163 580.5 541 59.0
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 2.3e-163 580.1 685 53.3
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 4.7e-161 572.4 697 56.8
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 6.2e-161 572.0 650 57.8
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 1.1e-160 571.2 688 56.2
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 3.1e-160 569.7 674 55.2
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 2.2e-158 563.5 691 53.7
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 1.2e-151 541.2 682 55.0
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 1.5e-151 540.8 735 49.8
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 2.6e-151 540.0 742 50.8
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 4.4e-151 539.3 615 56.7
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 1.7e-150 537.3 725 50.3
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 3.8e-150 536.2 670 51.6
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 3.2e-149 533.1 758 46.7
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 2.1e-148 530.4 682 51.3
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 1.0e-147 528.1 680 50.1
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 5.1e-147 525.8 739 51.0
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 5.1e-147 525.8 686 53.5
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 9.6e-146 521.5 707 50.1
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 3.6e-145 519.6 679 52.0
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 4.8e-145 519.2 550 56.0
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 1.4e-144 517.7 682 51.0
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 6.9e-144 515.4 677 53.3
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 9.0e-144 515.0 678 53.2
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 1.2e-143 514.6 740 49.2
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 7.6e-143 511.9 711 50.1
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 1.6e-140 504.2 708 50.6
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 7.8e-140 501.9 686 49.7
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 1.9e-138 497.3 744 47.0
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 5.3e-136 489.2 576 55.4
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 1.2e-135 488.0 744 48.4
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 7.9e-132 475.3 705 47.1
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 3.9e-131 473.0 744 47.7
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 1.6e-129 467.6 779 44.5
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 1.4e-128 464.5 660 47.3
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 3.1e-128 463.4 676 49.1
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 5.5e-125 452.6 533 52.9
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 7.1e-125 452.2 529 52.6
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 7.1e-125 452.2 695 47.2
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 1.1e-122 444.9 534 52.4
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 9.6e-122 441.8 681 48.8
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.6e-121 441.0 437 62.7
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 1.2e-119 434.9 722 47.4
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 2.6e-119 433.7 324 72.5
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 1.4e-117 427.9 694 46.5
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 2.5e-117 427.2 709 47.0
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 7.9e-116 422.2 694 46.1
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 1.3e-115 421.4 659 48.7
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 5.7e-114 416.0 722 45.6
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 1.2e-111 408.3 531 51.4
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 1.5e-111 407.9 691 45.7
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 3.8e-110 403.3 620 44.5
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 6.1e-108 396.0 392 63.5
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 1.0e-107 395.2 682 45.0
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 5.1e-107 392.9 677 43.7
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 1.1e-106 391.7 706 45.5
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 1.5e-106 391.3 687 44.0
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 9.7e-106 388.7 688 43.8
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 4.1e-104 383.3 665 45.9
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 7.4e-98 362.5 597 40.7
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 1.4e-96 358.2 356 57.6
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 1.2e-95 355.1 581 40.6
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 7.7e-95 352.4 735 39.5
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 1.0e-94 352.1 677 40.8
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 8.5e-94 349.0 677 39.3
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 5.0e-86 323.2 560 41.4
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 2.9e-78 297.4 212 73.1
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 1.1e-77 295.4 496 42.5
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 1.8e-75 288.1 836 32.2
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 4.4e-74 283.5 308 57.5
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 2.7e-63 247.7 531 36.7
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 1.1e-61 242.3 198 57.6
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.9e-61 241.5 286 57.0
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 8.9e-59 232.6 276 55.1
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 5.8e-58 229.9 265 60.0
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 6.4e-57 226.5 729 30.7
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 1.9e-56 224.9 194 58.8
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 2.1e-52 211.5 717 29.4
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 6.2e-44 183.3 263 51.3
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 7.6e-42 176.4 667 28.9
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 6.4e-41 173.3 415 33.7
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 5.4e-40 170.2 215 45.1
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 7.8e-39 166.4 228 49.6
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 1.1e-29 136.0 111 58.6
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 3.6e-28 131.0 115 61.7
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 4.8e-28 130.6 102 67.6
GSVIVG01005594001 Vitis vinifera HOM05D004723 ORTHO05D006176 3.1e-27 127.9 166 53.6
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 1.2e-26 125.9 275 42.2
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 2.1e-23 115.2 144 54.2
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 3.3e-21 107.8 190 41.6
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 4.3e-21 107.5 319 32.3
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 3.6e-20 104.4 160 39.4
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 1.4e-19 102.4 150 46.7
GSVIVG01005388001 Vitis vinifera HOM05D004723 ORTHO05D006176 2.4e-19 101.7 64 73.4
Lsat_1_v5_gn_5_164041 Lactuca sativa HOM05D004723 ORTHO05D006176 7.6e-18 96.7 195 37.4
Thecc.01G154900 Theobroma cacao HOM05D004723 ORTHO05D006176 1.9e-16 92.0 59 76.3
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 1.9e-16 92.0 281 29.5
TPR.G29970 Trifolium pratense HOM05D004723 ORTHO05D006176 2.4e-16 91.7 67 68.7
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 3.2e-16 91.3 89 50.6
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 2.3e-14 85.1 148 39.9
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 3.3e-13 81.3 60 68.3
Actinidia28727 Actinidia chinensis HOM05D004723 ORTHO05D006176 7.4e-13 80.1 108 50.9
COL.COLO4_33622 Corchorus olitorius HOM05D004723 ORTHO05D006176 2.1e-12 78.6 65 61.5
SEGI_25425 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 2.1e-12 78.6 61 63.9
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 4.9e-09 67.4 48 58.3
C03p39890 Brassica napus HOM05D004723 ORTHO05D019910 9.3e-08 63.2 72 55.6
BolC3t16251H Brassica oleracea HOM05D004723 ORTHO05D019910 9.3e-08 63.2 72 55.6
FAN17G1680 Fragaria x ananassa HOM05D032679 ORTHO05D022627 2.1e-07 62.0 78 41.0
FAN22G1655 Fragaria x ananassa HOM05D002244 ORTHO05D035452 2.1e-07 62.0 50 58.0
FAN24G3340 Fragaria x ananassa HOM05D032679 ORTHO05D022627 2.1e-07 62.0 78 41.0
C03p39770 Brassica napus HOM05D059891 ORTHO05D040930 2.7e-07 61.6 69 46.4
Eucgr.C02078 Eucalyptus grandis HOM05D000238 ORTHO05D010253 3.5e-07 61.2 78 51.3
FAN03G2005 Fragaria x ananassa HOM05D004723 ORTHO05D002269 4.6e-07 60.8 50 56.0
FAN18G3965 Fragaria x ananassa HOM05D032679 ORTHO05D022627 1.0e-06 59.7 78 39.7


User provided reference genes

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