Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02284 Eucalyptus grandis HOM05D007451 ORTHO05D009399 2.5e-84 315.5 168 100.0
Eucgr.E03355 Eucalyptus grandis HOM05D007451 ORTHO05D009399 1.3e-56 223.4 177 76.8
Eucgr.B02066 Eucalyptus grandis HOM05D007451 ORTHO05D009399 3.2e-55 218.8 165 77.0
Eucgr.J01485 Eucalyptus grandis HOM05D007451 ORTHO05D009399 6.5e-32 141.4 96 83.3
Eucgr.C02335 Eucalyptus grandis HOM05D007451 ORTHO05D009399 2.1e-30 136.3 85 87.1
Eucgr.H02213 Eucalyptus grandis HOM05D007451 ORTHO05D009399 1.3e-24 117.1 101 72.3
Sabra04G0085400 Salix brachista HOM05D007451 ORTHO05D009399 7.2e-23 111.3 170 44.1
CSS0045800 Camellia sinensis var. sinensis HOM05D007451 ORTHO05D009399 1.6e-22 110.2 176 41.5
Nitab4.5_0003044g0100 Nicotiana tabacum HOM05D007451 ORTHO05D009399 2.1e-22 109.8 170 39.4
TPR.G38261 Trifolium pratense HOM05D007451 ORTHO05D009399 8.0e-22 107.8 165 43.0
Manes.17G070400 Manihot esculenta HOM05D007451 ORTHO05D009399 1.0e-21 107.5 165 43.0
GSVIVG01021497001 Vitis vinifera HOM05D007451 ORTHO05D009399 1.0e-21 107.5 166 44.0
Rhsim02G0158600 Rhododendron simsii HOM05D007451 ORTHO05D009399 1.8e-21 106.7 169 40.2
Psat7g130000 Pisum sativum HOM05D007451 ORTHO05D009399 3.0e-21 105.9 166 42.8
FAN21G0862 Fragaria x ananassa HOM05D007451 ORTHO05D009399 5.2e-21 105.1 180 42.8
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 1.2e-20 104.0 166 41.6
Potri.004G132600 Populus trichocarpa HOM05D007451 ORTHO05D009399 1.2e-20 104.0 165 43.0
Oeu031273.1 Olea europaea HOM05D007451 ORTHO05D009399 2.0e-20 103.2 170 39.4
CiPaw.10G091600 Carya illinoinensis HOM05D007451 ORTHO05D009399 2.6e-20 102.8 160 43.1
Cc10_g10170 Coffea canephora HOM05D007451 ORTHO05D009399 5.7e-20 101.7 170 41.8
RcHm_v2.0_Chr5g0014241 Rosa chinensis HOM05D007451 ORTHO05D009399 7.5e-20 101.3 172 43.0
Medtr4g084470 Medicago truncatula HOM05D007451 ORTHO05D009399 9.8e-20 100.9 174 39.1
Thecc.06G150100 Theobroma cacao HOM05D007451 ORTHO05D009399 1.3e-19 100.5 166 41.0
TWI73G0492 Tripterygium wilfordii HOM05D007451 ORTHO05D009399 1.3e-19 100.5 157 43.3
Ciclev10018276m.g Citrus clementina HOM05D007451 ORTHO05D009399 2.8e-19 99.4 165 40.0
Lj1C1189G10 Lonicera japonica HOM05D007451 ORTHO05D009399 2.8e-19 99.4 166 39.8
Thhalv10017344m.g Eutrema salsugineum HOM05D007451 ORTHO05D009399 4.9e-19 98.6 172 39.5
CAN.G65.121 Capsicum annuum HOM05D007451 ORTHO05D009399 1.4e-18 97.1 173 40.5
HanXRQChr04g0114281 Helianthus annuus HOM05D007451 ORTHO05D009399 1.8e-18 96.7 165 38.8
FAN11G0575 Fragaria x ananassa HOM05D007451 ORTHO05D009399 2.4e-18 96.3 180 39.4
arahy.Tifrunner.gnm1.ann1.Z8IVUX Arachis hypogaea HOM05D007451 ORTHO05D009399 3.1e-18 95.9 166 39.8
Glyma.20G018400 Glycine max HOM05D007451 ORTHO05D009399 3.1e-18 95.9 165 41.2
BraA05t20052Z Brassica rapa HOM05D007451 ORTHO05D009399 4.1e-18 95.5 172 36.6
AL4G30550 Arabidopsis lyrata HOM05D007451 ORTHO05D009399 7.0e-18 94.7 175 37.7
arahy.Tifrunner.gnm1.ann1.ZU2BT9 Arachis hypogaea HOM05D007451 ORTHO05D009399 7.0e-18 94.7 166 39.2
CARHR128670 Cardamine hirsuta HOM05D007451 ORTHO05D009399 9.2e-18 94.4 175 37.7
Sc17g0004890 Simmondsia chinensis HOM05D007451 ORTHO05D009399 1.2e-17 94.0 166 38.6
Sp4g16840 Schrenkiella parvula HOM05D007451 ORTHO05D009399 2.0e-17 93.2 165 38.2
BcaB02g09525 Brassica carinata HOM05D007451 ORTHO05D009399 2.7e-17 92.8 165 37.0
BcaC02g11529 Brassica carinata HOM05D007451 ORTHO05D009399 2.7e-17 92.8 165 37.6
TAR624G0819 Trochodendron aralioides HOM05D007451 ORTHO05D009399 2.7e-17 92.8 169 39.1
AT2G34580 Arabidopsis thaliana HOM05D007451 ORTHO05D009399 4.5e-17 92.0 165 37.6
VMungo0251G0908 Vigna mungo HOM05D007451 ORTHO05D009399 4.5e-17 92.0 166 39.8
CANSAT35G1195 Cannabis sativa HOM05D007451 ORTHO05D009399 5.9e-17 91.7 172 36.0
PSO541G4911 Papaver somniferum HOM05D007451 ORTHO05D009399 1.3e-16 90.5 172 36.6
PSO675G9053 Papaver somniferum HOM05D007451 ORTHO05D009399 2.3e-16 89.7 172 36.0
Actinidia07699 Actinidia chinensis HOM05D007451 ORTHO05D009399 2.9e-16 89.4 158 38.6
Phvul.002G096800 Phaseolus vulgaris HOM05D007451 ORTHO05D009399 2.9e-16 89.4 163 37.4
Lsat_1_v5_gn_7_28421 Lactuca sativa HOM05D007451 ORTHO05D009399 1.9e-15 86.7 166 37.3
Carub.0004s1625 Capsella rubella HOM05D007451 ORTHO05D009399 4.3e-15 85.5 165 35.8
ECA246G3905 Erigeron canadensis HOM05D007451 ORTHO05D009399 5.6e-15 85.1 165 35.2
MBI07_g23439_MAGBIO Magnolia biondii HOM05D007451 ORTHO05D009399 2.1e-14 83.2 169 35.5
EL10Ac8g19670 Beta vulgaris HOM05D007451 ORTHO05D009399 3.6e-14 82.4 166 36.1
Dinv32247 Davidia involucrata HOM05D007451 ORTHO05D009399 3.6e-14 82.4 164 36.0
MD05G1283500 Malus domestica HOM05D007451 ORTHO05D009399 4.7e-14 82.0 172 36.0
Nitab4.5_0003838g0080 Nicotiana tabacum HOM05D007451 ORTHO05D009399 4.7e-14 82.0 170 32.9
QL05p057933 Quercus lobata HOM05D007451 ORTHO05D009399 1.0e-13 80.9 164 37.8
EL10Ac8g19669 Beta vulgaris HOM05D007451 ORTHO05D009399 1.4e-13 80.5 166 35.5
Nn4g26566 Nelumbo nucifera HOM05D007451 ORTHO05D009399 1.4e-13 80.5 127 45.7
Prupe.4G081100 Prunus persica HOM05D007451 ORTHO05D009399 1.4e-13 80.5 172 34.9
Hma1.2p1_0286F.1_g114180 Hydrangea macrophylla HOM05D007451 ORTHO05D009399 1.8e-13 80.1 171 35.7
Lalb_Chr16g0385141 Lupinus albus HOM05D007451 ORTHO05D009399 8.9e-13 77.8 169 35.5
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.2e-12 77.4 167 37.7
Cfa000938 Carpinus fangiana HOM05D007451 ORTHO05D009399 4.4e-12 75.5 172 34.9
BolC4t23021H Brassica oleracea HOM05D005261 ORTHO05D006180 1.7e-11 73.6 117 37.6
A05p11060 Brassica napus HOM05D005261 ORTHO05D006180 2.2e-11 73.2 127 35.4
THA.LOC104814695 Tarenaya hassleriana HOM05D007451 ORTHO05D009399 3.7e-11 72.4 166 34.9
AUR62002741 Chenopodium quinoa HOM05D007451 ORTHO05D009399 4.9e-11 72.0 169 34.3
Aqoxy1G01697 Aquilegia oxysepala HOM05D007451 ORTHO05D009399 1.4e-10 70.5 167 35.9
Gohir.A10G041200 Gossypium hirsutum HOM05D007451 ORTHO05D009399 1.4e-10 70.5 166 33.7
Gohir.D10G042000 Gossypium hirsutum HOM05D007451 ORTHO05D009399 1.4e-10 70.5 166 33.7
Gorai.011G044600 Gossypium raimondii HOM05D007451 ORTHO05D009399 1.4e-10 70.5 166 33.7
AUR62002733 Chenopodium quinoa HOM05D007451 ORTHO05D009399 2.4e-10 69.7 169 33.7
Duzib192G0695 Durio zibethinus HOM05D007451 ORTHO05D009399 2.4e-10 69.7 98 46.9
Glyma.07G220100 Glycine max HOM05D007451 ORTHO05D009399 3.2e-10 69.3 166 32.5
AUR62030193 Chenopodium quinoa HOM05D007451 ORTHO05D009399 5.4e-10 68.6 159 34.6
CSS0015635 Camellia sinensis var. sinensis HOM05D007451 ORTHO05D009399 7.0e-10 68.2 117 40.2
DCAR_003911 Daucus carota HOM05D007451 ORTHO05D009399 1.2e-09 67.4 132 38.6
Lj4g0011610 Lotus japonicus HOM05D007451 ORTHO05D009399 3.5e-09 65.9 97 38.1
Gorai.008G053800 Gossypium raimondii HOM05D007451 ORTHO05D009399 2.3e-08 63.2 136 33.8
Peaxi162Scf00443g00210 Petunia axillaris HOM05D007451 ORTHO05D009399 5.0e-08 62.0 58 50.0
FvH4_3g05500 Fragaria vesca HOM05D007451 ORTHO05D009399 8.6e-08 61.2 172 33.7
BolC4t27857H Brassica oleracea HOM05D007451 ORTHO05D009399 1.5e-07 60.5 118 37.3
vmacro10960 Vaccinium macrocarpon HOM05D007451 ORTHO05D009399 1.2e-06 57.4 54 48.1
C04p14410 Brassica napus HOM05D007451 ORTHO05D009399 1.6e-06 57.0 112 33.9
Gohir.D12G050550 Gossypium hirsutum HOM05D007451 ORTHO05D009399 2.1e-06 56.6 132 32.6
Zm00001eb204550 Zea mays HOM05D007451 ORTHO05D009399 3.6e-06 55.8 138 35.5
arahy.Tifrunner.gnm1.ann1.WBAN0Y Arachis hypogaea HOM05D007451 ORTHO05D009399 6.2e-06 55.1 116 35.3
Haze_05609 Corylus avellana HOM05D007451 ORTHO05D009399 8.0e-06 54.7 58 44.8
Gohir.D12G174800 Gossypium hirsutum HOM05D007451 ORTHO05D009399 8.0e-06 54.7 151 31.8


User provided reference genes

Program Settings