Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02249 Eucalyptus grandis HOM05D001960 ORTHO05D004348 1.2e-152 543.1 268 100.0
Eucgr.I01925 Eucalyptus grandis HOM05D001960 ORTHO05D004348 5.9e-152 540.8 268 99.6
Ciclev10012084m.g Citrus clementina HOM05D001960 ORTHO05D004348 1.1e-150 536.6 268 98.5
Duzib187G1412 Durio zibethinus HOM05D001960 ORTHO05D004348 1.1e-150 536.6 268 98.5
RcHm_v2.0_Chr2g0169031 Rosa chinensis HOM05D001960 ORTHO05D004348 1.1e-150 536.6 268 98.5
Oeu050223.1 Olea europaea HOM05D001960 ORTHO05D004348 1.5e-150 536.2 268 97.8
CiPaw.04G019300 Carya illinoinensis HOM05D001960 ORTHO05D004348 1.9e-150 535.8 268 98.5
MELO3C009887.2 Cucumis melo HOM05D001960 ORTHO05D004348 1.9e-150 535.8 268 98.1
CsaV3_3G041630 Cucumis sativus L. HOM05D001960 ORTHO05D004348 1.9e-150 535.8 268 98.1
CiPaw.03G029300 Carya illinoinensis HOM05D001960 ORTHO05D004348 2.5e-150 535.4 268 98.5
FvH4_6g49160 Fragaria vesca HOM05D001960 ORTHO05D004348 3.2e-150 535.0 268 98.1
FAN14G2932 Fragaria x ananassa HOM05D001960 ORTHO05D004348 3.2e-150 535.0 268 98.1
Gohir.A09G022100 Gossypium hirsutum HOM05D001960 ORTHO05D004348 3.2e-150 535.0 268 98.1
Gohir.D09G021300 Gossypium hirsutum HOM05D001960 ORTHO05D004348 3.2e-150 535.0 268 98.1
Gorai.006G025300 Gossypium raimondii HOM05D001960 ORTHO05D004348 3.2e-150 535.0 268 98.1
PGR142G1484 Punica granatum HOM05D001960 ORTHO05D004348 3.2e-150 535.0 268 98.5
Gohir.D07G222700 Gossypium hirsutum HOM05D001960 ORTHO05D004348 5.5e-150 534.3 268 98.1
Gorai.001G257000 Gossypium raimondii HOM05D001960 ORTHO05D004348 5.5e-150 534.3 268 98.1
Prupe.3G271000 Prunus persica HOM05D001960 ORTHO05D004348 5.5e-150 534.3 268 97.8
Thecc.04G075700 Theobroma cacao HOM05D001960 ORTHO05D004348 5.5e-150 534.3 268 98.1
Cpa.g.sc14.35 Carica papaya HOM05D001960 ORTHO05D004348 7.2e-150 533.9 268 98.1
FAN05G5323 Fragaria x ananassa HOM05D001960 ORTHO05D004348 7.2e-150 533.9 268 97.8
ECA246G2943 Erigeron canadensis HOM05D001960 ORTHO05D004348 1.6e-149 532.7 268 97.8
Duzib147G0831 Durio zibethinus HOM05D001960 ORTHO05D004348 2.1e-149 532.3 268 97.8
Lj2A726T8 Lonicera japonica HOM05D001960 ORTHO05D004348 2.1e-149 532.3 268 97.8
Cfa007519 Carpinus fangiana HOM05D001960 ORTHO05D004348 2.7e-149 531.9 268 97.8
Glyma.09G240300 Glycine max HOM05D001960 ORTHO05D004348 2.7e-149 531.9 268 97.8
Glyma.18G256200 Glycine max HOM05D001960 ORTHO05D004348 2.7e-149 531.9 268 97.8
Hund13234 Selenicereus undatus HOM05D001960 ORTHO05D004348 2.7e-149 531.9 268 97.4
Ah.10g031310 Amaranthus hybridus HOM05D001960 ORTHO05D004348 3.6e-149 531.6 268 96.6
Ah.12g065390 Amaranthus hybridus HOM05D001960 ORTHO05D004348 3.6e-149 531.6 268 97.0
EL10Ac2g02943 Beta vulgaris HOM05D001960 ORTHO05D004348 3.6e-149 531.6 268 97.0
CANSAT11G2018 Cannabis sativa HOM05D001960 ORTHO05D004348 3.6e-149 531.6 268 97.4
Gohir.A07G215700 Gossypium hirsutum HOM05D001960 ORTHO05D004348 3.6e-149 531.6 268 97.4
MD17G1048200 Malus domestica HOM05D001960 ORTHO05D004348 3.6e-149 531.6 268 97.4
Phvul.008G043300 Phaseolus vulgaris HOM05D001960 ORTHO05D004348 3.6e-149 531.6 268 97.4
Sed0005459 Sechium edule HOM05D001960 ORTHO05D004348 3.6e-149 531.6 268 97.4
VMungo1383G3104 Vigna mungo HOM05D001960 ORTHO05D004348 3.6e-149 531.6 268 97.4
MSTRG.15485 Avicennia marina HOM05D001960 ORTHO05D004348 4.7e-149 531.2 268 97.8
DCAR_011154 Daucus carota HOM05D001960 ORTHO05D004348 4.7e-149 531.2 268 97.4
Dinv33731 Davidia involucrata HOM05D001960 ORTHO05D004348 4.7e-149 531.2 268 97.8
QL02p080802 Quercus lobata HOM05D001960 ORTHO05D004348 4.7e-149 531.2 267 97.4
DCAR_011153 Daucus carota HOM05D001960 ORTHO05D004348 6.1e-149 530.8 268 97.0
HanXRQChr15g0474171 Helianthus annuus HOM05D001960 ORTHO05D004348 6.1e-149 530.8 268 97.0
PSO017G2769 Papaver somniferum HOM05D001960 ORTHO05D004348 6.1e-149 530.8 268 97.0
PSO478G2180 Papaver somniferum HOM05D001960 ORTHO05D004348 6.1e-149 530.8 268 97.0
MD09G1048000 Malus domestica HOM05D001960 ORTHO05D004348 8.0e-149 530.4 268 97.4
Sed0008481 Sechium edule HOM05D001960 ORTHO05D004348 8.0e-149 530.4 268 97.4
Lj1g0025494 Lotus japonicus HOM05D001960 ORTHO05D004348 1.0e-148 530.0 268 97.0
GSVIVG01011352001 Vitis vinifera HOM05D001960 ORTHO05D004348 1.4e-148 529.6 268 97.4
ATR0706G077 Amborella trichopoda HOM05D001960 ORTHO05D004348 1.8e-148 529.3 268 96.6
HanXRQChr17g0547421 Helianthus annuus HOM05D001960 ORTHO05D004348 1.8e-148 529.3 268 96.6
Nitab4.5_0000098g0050 Nicotiana tabacum HOM05D001960 ORTHO05D004348 1.8e-148 529.3 268 96.6
Hma1.2p1_0449F.1_g155170 Hydrangea macrophylla HOM05D001960 ORTHO05D004348 2.3e-148 528.9 268 96.6
Nitab4.5_0013371g0010 Nicotiana tabacum HOM05D001960 ORTHO05D004348 2.3e-148 528.9 268 96.3
THA.LOC104823931 Tarenaya hassleriana HOM05D001960 ORTHO05D004348 2.3e-148 528.9 268 96.3
Lsat_1_v5_gn_3_102160 Lactuca sativa HOM05D001960 ORTHO05D004348 3.0e-148 528.5 268 96.3
TAR629G1922 Trochodendron aralioides HOM05D001960 ORTHO05D004348 3.0e-148 528.5 268 95.9
COL.COLO4_25163 Corchorus olitorius HOM05D001960 ORTHO05D004348 4.0e-148 528.1 268 97.0
Ca_04106_v3 Cicer arietinum L. HOM05D001960 ORTHO05D004348 5.2e-148 527.7 268 97.0
Ca_04115_v3 Cicer arietinum L. HOM05D001960 ORTHO05D004348 5.2e-148 527.7 268 97.0
Lalb_Chr02g0159521 Lupinus albus HOM05D001960 ORTHO05D004348 5.2e-148 527.7 268 96.6
Lalb_Chr02g0159571 Lupinus albus HOM05D001960 ORTHO05D004348 5.2e-148 527.7 268 96.6
Medtr7g009590 Medicago truncatula HOM05D001960 ORTHO05D004348 5.2e-148 527.7 268 97.0
Psat3g196680 Pisum sativum HOM05D001960 ORTHO05D004348 5.2e-148 527.7 268 97.0
TPR.G4258 Trifolium pratense HOM05D001960 ORTHO05D004348 5.2e-148 527.7 268 97.0
MSTRG.3317 Avicennia marina HOM05D001960 ORTHO05D004348 6.7e-148 527.3 268 96.6
Solyc10g081530.2 Solanum lycopersicum HOM05D001960 ORTHO05D004348 6.7e-148 527.3 268 95.9
Sopen10g032040 Solanum pennellii HOM05D001960 ORTHO05D004348 6.7e-148 527.3 268 95.9
PGSC0003DMG400028218 Solanum tuberosum HOM05D001960 ORTHO05D004348 6.7e-148 527.3 268 95.9
THA.LOC104805447 Tarenaya hassleriana HOM05D001960 ORTHO05D004348 6.7e-148 527.3 268 95.9
ClCG10G014880 Citrullus lanatus HOM05D001960 ORTHO05D004348 8.8e-148 526.9 280 93.9
Migut.H00896 Erythranthe guttata HOM05D001960 ORTHO05D004348 8.8e-148 526.9 268 97.0
FAN02G2692 Fragaria x ananassa HOM05D001960 ORTHO05D004348 8.8e-148 526.9 263 98.1
Peaxi162Scf00163g00105 Petunia axillaris HOM05D001960 ORTHO05D004348 8.8e-148 526.9 268 95.9
SalBow1G4343 Salvia bowleyana HOM05D001960 ORTHO05D004348 8.8e-148 526.9 268 96.6
CSS0022239 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 1.2e-147 526.6 268 96.6
CAN.G128.149 Capsicum annuum HOM05D001960 ORTHO05D004348 1.5e-147 526.2 268 95.5
Lsat_1_v5_gn_2_88741 Lactuca sativa HOM05D001960 ORTHO05D004348 1.5e-147 526.2 268 95.9
Manes.17G022500 Manihot esculenta HOM05D001960 ORTHO05D004348 1.5e-147 526.2 268 95.9
Manes.17G022700 Manihot esculenta HOM05D001960 ORTHO05D004348 1.5e-147 526.2 268 95.9
Manes.17G022600 Manihot esculenta HOM05D001960 ORTHO05D004348 3.3e-147 525.0 268 95.9
Oeu060924.1 Olea europaea HOM05D001960 ORTHO05D004348 3.3e-147 525.0 268 96.3
Aqoxy3G03291 Aquilegia oxysepala HOM05D001960 ORTHO05D004348 4.4e-147 524.6 268 95.5
AUR62031635 Chenopodium quinoa HOM05D001960 ORTHO05D004348 4.4e-147 524.6 268 95.1
Rhsim09G0146300 Rhododendron simsii HOM05D001960 ORTHO05D004348 4.4e-147 524.6 268 96.3
BcaB07g30124 Brassica carinata HOM05D001960 ORTHO05D004348 5.7e-147 524.2 268 94.0
BcaC03g17524 Brassica carinata HOM05D001960 ORTHO05D004348 5.7e-147 524.2 268 94.0
A02p36010 Brassica napus HOM05D001960 ORTHO05D004348 5.7e-147 524.2 268 94.0
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 5.7e-147 524.2 268 94.0
C02p54850 Brassica napus HOM05D001960 ORTHO05D004348 5.7e-147 524.2 268 94.0
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 5.7e-147 524.2 268 94.0
BolC2t11546H Brassica oleracea HOM05D001960 ORTHO05D004348 5.7e-147 524.2 268 94.0
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 5.7e-147 524.2 268 94.0
BraA02t08600Z Brassica rapa HOM05D001960 ORTHO05D004348 5.7e-147 524.2 268 94.0
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 5.7e-147 524.2 268 94.0
Carub.0005s0724 Capsella rubella HOM05D001960 ORTHO05D004348 7.5e-147 523.9 268 94.4
Hma1.2p1_0423F.1_g150240 Hydrangea macrophylla HOM05D001960 ORTHO05D004348 7.5e-147 523.9 268 96.3
Lalb_Chr21g0318931 Lupinus albus HOM05D001960 ORTHO05D004348 7.5e-147 523.9 268 96.3
Sc02g0007720 Simmondsia chinensis HOM05D001960 ORTHO05D004348 7.5e-147 523.9 268 95.1
TWI60G1096 Tripterygium wilfordii HOM05D001960 ORTHO05D004348 9.7e-147 523.5 268 96.3
AL5G18390 Arabidopsis lyrata HOM05D001960 ORTHO05D004348 1.3e-146 523.1 268 94.0
AL5G18410 Arabidopsis lyrata HOM05D001960 ORTHO05D004348 1.3e-146 523.1 268 94.0
AT3G28710 Arabidopsis thaliana HOM05D001960 ORTHO05D004348 1.3e-146 523.1 268 94.0
A09p03760 Brassica napus HOM05D001960 ORTHO05D004348 1.3e-146 523.1 268 94.0
C09p03950 Brassica napus HOM05D001960 ORTHO05D004348 1.3e-146 523.1 268 94.0
BraA09t36012Z Brassica rapa HOM05D001960 ORTHO05D004348 1.3e-146 523.1 268 94.0
Migut.K01329 Erythranthe guttata HOM05D001960 ORTHO05D004348 1.3e-146 523.1 268 95.9
Thhalv10004497m.g Eutrema salsugineum HOM05D001960 ORTHO05D004348 1.3e-146 523.1 268 94.0
Sp2g17353 Schrenkiella parvula HOM05D001960 ORTHO05D004348 1.3e-146 523.1 268 94.0
BcaC06g33635 Brassica carinata HOM05D001960 ORTHO05D008957 1.7e-146 522.7 266 94.4
Carub.0005s0725 Capsella rubella HOM05D001960 ORTHO05D004348 1.7e-146 522.7 268 94.0
Nn1g04484 Nelumbo nucifera HOM05D001960 ORTHO05D004348 1.7e-146 522.7 268 95.1
AT3G28715 Arabidopsis thaliana HOM05D001960 ORTHO05D004348 2.2e-146 522.3 268 94.0
BcaB04g19480 Brassica carinata HOM05D001960 ORTHO05D004348 2.2e-146 522.3 268 93.7
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 2.2e-146 522.3 268 94.0
Potri.017G079200 Populus trichocarpa HOM05D001960 ORTHO05D004348 2.2e-146 522.3 268 95.5
Thhalv10004498m.g Eutrema salsugineum HOM05D001960 ORTHO05D004348 2.8e-146 521.9 268 93.7
Actinidia38882 Actinidia chinensis HOM05D001960 ORTHO05D004348 3.7e-146 521.5 264 96.6
Aa31LG9G1760 Aethionema arabicum HOM05D001960 ORTHO05D004348 3.7e-146 521.5 268 94.4
Aa31LG2G4500 Aethionema arabicum HOM05D001960 ORTHO05D004348 4.8e-146 521.2 268 93.7
Zm00001eb160620 Zea mays HOM05D001960 ORTHO05D004348 4.8e-146 521.2 268 94.4
BolC9t53326H Brassica oleracea HOM05D001960 ORTHO05D004348 6.3e-146 520.8 268 93.7
Sp2g17360 Schrenkiella parvula HOM05D001960 ORTHO05D004348 8.2e-146 520.4 268 93.3
SGA_v2.0_scaffold236G43786 Striga asiatica HOM05D001960 ORTHO05D004348 8.2e-146 520.4 268 95.9
TWI32G1350 Tripterygium wilfordii HOM05D001960 ORTHO05D004348 1.1e-145 520.0 268 95.5
SGA_v2.0_scaffold30G12526 Striga asiatica HOM05D001960 ORTHO05D004348 1.8e-145 519.2 268 95.9
vmacro10254 Vaccinium macrocarpon HOM05D001960 ORTHO05D004348 2.4e-145 518.8 269 95.5
TAR374G0426 Trochodendron aralioides HOM05D001960 ORTHO05D004348 4.1e-145 518.1 262 96.6
Os01g0587000 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D004348 7.0e-145 517.3 268 92.9
HPP92_006462 Vanilla planifolia HOM05D001960 ORTHO05D004348 2.0e-144 515.8 268 94.0
arahy.Tifrunner.gnm1.ann1.EZF2RR Arachis hypogaea HOM05D001960 ORTHO05D004348 4.5e-144 514.6 302 86.8
arahy.Tifrunner.gnm1.ann1.M50Q99 Arachis hypogaea HOM05D001960 ORTHO05D004348 4.5e-144 514.6 302 86.8
CDE06G0436 Ceratophyllum demersum HOM05D001960 ORTHO05D004348 4.5e-144 514.6 268 93.7
AUR62038866 Chenopodium quinoa HOM05D001960 ORTHO05D004348 1.5e-142 509.6 261 94.6
CSS0024221 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 5.5e-142 507.7 268 94.8
Pp3c20_18840 Physcomitrium patens HOM05D001960 ORTHO05D004348 2.8e-138 495.4 268 89.9
Nn1g04485 Nelumbo nucifera HOM05D001960 ORTHO05D004348 1.8e-137 492.7 257 93.4
Mapoly0006s0177 Marchantia polymorpha HOM05D001960 ORTHO05D004348 4.1e-137 491.5 268 88.4
FAN09G2990 Fragaria x ananassa HOM05D007272 ORTHO05D009305 3.8e-135 485.0 243 97.9
AagrBONN_evm.TU.Sc2ySwM_340.257 Anthoceros agrestis HOM05D001960 ORTHO05D004348 1.1e-134 483.4 268 87.7
Mapoly0140s0023 Marchantia polymorpha HOM05D001960 ORTHO05D004348 1.1e-134 483.4 268 86.9
CBR_g20991 Chara braunii HOM05D001960 ORTHO05D004348 2.5e-134 482.3 266 86.5
Actinidia34797 Actinidia chinensis HOM05D001960 ORTHO05D004348 9.5e-134 480.3 249 94.8
TWI32G0692 Tripterygium wilfordii HOM05D001960 ORTHO05D004348 6.1e-133 477.6 248 95.2
Hma1.2p1_2982F.1_g331260 Hydrangea macrophylla HOM05D001960 ORTHO05D004348 2.0e-131 472.6 297 81.8
SMO137G0011 Selaginella moellendorffii HOM05D001960 ORTHO05D004348 2.0e-131 472.6 268 85.1
CARHR151640 Cardamine hirsuta HOM05D001960 ORTHO05D004348 4.4e-131 471.5 268 86.6
Peaxi162Scf00061g02912 Petunia axillaris HOM05D001960 ORTHO05D004348 8.6e-127 457.2 262 88.2
CBR_g20375 Chara braunii HOM05D001960 ORTHO05D004348 1.2e-125 453.4 261 81.2
Cre03.g176250 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D004348 1.4e-121 439.9 268 78.4
Dinv33729 Davidia involucrata HOM05D001960 ORTHO05D004348 1.4e-121 439.9 269 84.0
Nitab4.5_0000387g0100 Nicotiana tabacum HOM05D001960 ORTHO05D004348 1.3e-119 433.3 267 82.4
unitig_748.g8436 Utricularia gibba HOM05D001960 ORTHO05D004348 5.6e-118 427.9 224 93.3
Nitab4.5_0002087g0050 Nicotiana tabacum HOM05D001960 ORTHO05D004348 4.4e-115 418.3 268 80.6
Haze_14574 Corylus avellana HOM05D001960 ORTHO05D004348 9.9e-107 390.6 286 72.7
PRCOL_00003698 Prasinoderma coloniale HOM05D001960 ORTHO05D004348 6.6e-103 377.9 260 68.5
Medtr7g009485 Medicago truncatula HOM05D001960 ORTHO05D004348 1.4e-97 360.1 180 97.8
MCO01G616 Micromonas commoda HOM05D001960 ORTHO05D004348 1.1e-89 334.0 261 58.6
Sabra17G0070300 Salix brachista HOM05D001960 ORTHO05D004348 2.1e-88 329.7 217 78.3
CDE04G1714 Ceratophyllum demersum HOM05D001960 ORTHO05D004348 2.7e-80 302.8 268 61.9
Haze_26095 Corylus avellana HOM05D001960 ORTHO05D004348 6.0e-80 301.6 269 54.3
Haze_26410 Corylus avellana HOM05D001960 ORTHO05D004348 4.8e-77 292.0 269 52.0
CARHR040070 Cardamine hirsuta HOM05D001960 ORTHO05D004348 6.7e-71 271.6 146 89.7
Hund15632 Selenicereus undatus HOM05D001960 ORTHO05D004348 2.9e-66 256.1 183 73.2
Medtr7g009520 Medicago truncatula HOM05D001960 ORTHO05D000035 3.2e-65 252.7 138 91.3
Cfa024469 Carpinus fangiana HOM05D001960 ORTHO05D004348 3.3e-62 242.7 261 47.1
Haze_14570 Corylus avellana HOM05D001960 ORTHO05D004348 5.7e-62 241.9 139 86.3
SHI04268 Sapria himalayana HOM05D001960 ORTHO05D004348 1.2e-48 197.6 189 57.7
Medtr7g009550 Medicago truncatula HOM05D001960 ORTHO05D004348 1.6e-48 197.2 181 62.4
Sabra17G0070400 Salix brachista HOM05D001960 ORTHO05D004348 4.2e-41 172.6 87 96.6
C06p11040 Brassica napus HOM05D001960 ORTHO05D033665 1.8e-39 167.2 88 89.8
CSS0002033 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 8.8e-39 164.9 106 80.2
CSS0019148 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 3.1e-36 156.4 106 77.4
SHI06815 Sapria himalayana HOM05D001960 ORTHO05D033665 2.5e-33 146.7 115 67.0
BolC6t36190H Brassica oleracea HOM05D001960 ORTHO05D033665 2.0e-30 137.1 72 91.7
SHI06812 Sapria himalayana HOM05D001960 ORTHO05D004348 2.5e-25 120.2 66 86.4
CSS0026364 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 1.3e-21 107.8 51 98.0
Medtr7g009575 Medicago truncatula HOM05D001960 ORTHO05D004348 7.0e-20 102.1 118 51.7
BolC2t11552H Brassica oleracea HOM05D001960 ORTHO05D004348 1.6e-19 100.9 77 71.4
Medtr7g009420 Medicago truncatula HOM05D000053 ORTHO05D000035 1.0e-18 98.2 56 87.5
Zm00001eb357360 Zea mays HOM05D001960 ORTHO05D033473 6.6e-18 95.5 107 50.5
Pp3c8_5810 Physcomitrium patens HOM05D001960 ORTHO05D318620 6.8e-15 85.5 86 58.1
Lsat_1_v5_gn_4_93961 Lactuca sativa HOM05D006173 ORTHO05D007685 8.9e-15 85.1 52 80.8
Lsat_1_v5_gn_8_159501 Lactuca sativa HOM05D001960 ORTHO05D229701 3.7e-13 79.7 124 41.9
Lsat_1_v5_gn_5_97320 Lactuca sativa HOM05D004736 ORTHO05D006424 5.2e-07 59.3 37 78.4


User provided reference genes

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