Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 9.1e-185 650.2 352 100.0
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 4.3e-94 349.0 381 55.1
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 4.5e-91 339.0 395 56.2
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.3e-90 337.4 373 55.8
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 1.2e-88 330.9 379 55.4
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.2e-88 330.9 379 55.4
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.6e-88 330.5 379 55.4
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 5.1e-87 325.5 379 54.1
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 1.5e-86 323.9 381 55.1
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 1.8e-84 317.0 379 53.8
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 1.8e-84 317.0 379 53.8
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 4.1e-84 315.8 381 52.8
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 4.1e-84 315.8 400 49.2
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.2e-83 314.3 391 50.4
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.5e-83 313.9 386 52.1
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 4.5e-83 312.4 373 53.9
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 1.3e-82 310.8 389 51.9
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 2.2e-82 310.1 380 52.1
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 6.5e-82 308.5 394 53.0
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 1.9e-81 307.0 372 52.7
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 3.2e-81 306.2 378 50.5
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 5.5e-81 305.4 372 53.2
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 5.5e-81 305.4 379 53.6
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 5.5e-81 305.4 383 52.7
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 2.1e-80 303.5 374 52.9
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.8e-79 300.4 373 50.7
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.8e-79 300.4 373 50.7
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 1.1e-78 297.7 397 51.1
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 2.5e-78 296.6 372 53.5
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 3.3e-78 296.2 380 53.2
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 1.3e-77 294.3 382 50.0
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 2.2e-77 293.5 376 53.5
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 3.7e-77 292.7 379 49.9
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 1.8e-76 290.4 366 54.4
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 5.3e-76 288.9 358 54.5
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 3.4e-75 286.2 379 52.2
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 1.7e-74 283.9 369 52.3
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 2.2e-74 283.5 379 48.5
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 1.9e-73 280.4 382 52.1
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 3.2e-73 279.6 377 52.0
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 5.5e-73 278.9 374 50.5
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 7.2e-73 278.5 380 47.4
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 1.6e-72 277.3 378 51.9
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 6.1e-72 275.4 374 47.3
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 7.9e-72 275.0 383 49.1
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 1.4e-71 274.2 377 51.5
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 2.0e-70 270.4 389 50.4
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 1.3e-69 267.7 374 50.0
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 1.3e-69 267.7 356 46.9
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 6.3e-69 265.4 373 51.7
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 1.1e-68 264.6 392 50.0
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 1.8e-68 263.8 365 50.7
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 5.3e-68 262.3 388 48.7
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.0e-67 260.4 369 50.7
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 4.5e-67 259.2 392 48.0
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 4.5e-67 259.2 390 48.2
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 7.7e-67 258.5 374 46.3
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 1.7e-66 257.3 380 49.7
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 1.9e-65 253.8 386 46.6
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 5.5e-65 252.3 380 49.2
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 7.2e-65 251.9 384 47.7
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 1.2e-64 251.1 386 45.9
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 1.2e-64 251.1 366 47.5
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 1.2e-64 251.1 374 49.2
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 1.6e-64 250.8 348 49.4
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 1.6e-64 250.8 370 47.8
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 2.7e-64 250.0 387 46.0
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 1.4e-63 247.7 349 51.3
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 3.9e-63 246.1 372 46.5
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 5.7e-62 242.3 353 50.7
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 9.7e-62 241.5 357 50.1
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 2.8e-61 240.0 329 51.4
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 2.8e-61 240.0 387 44.7
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 4.8e-61 239.2 388 44.1
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 4.8e-61 239.2 387 43.7
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 8.2e-61 238.4 387 43.7
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 1.4e-60 237.7 388 42.5
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 4.1e-60 236.1 353 47.6
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 1.2e-59 234.6 382 44.5
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 2.6e-59 233.4 316 52.5
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.0e-58 231.5 316 52.2
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.2e-58 230.3 316 52.8
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 4.2e-57 226.1 316 51.3
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 4.2e-57 226.1 373 46.6
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 6.1e-56 222.2 373 47.5
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 6.1e-56 222.2 386 41.7
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 4.0e-55 219.5 375 46.1
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 4.4e-54 216.1 388 42.3
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 1.7e-53 214.2 360 40.8
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 1.7e-53 214.2 375 42.1
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 2.8e-53 213.4 360 44.7
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 7.0e-52 208.8 368 39.7
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 7.0e-52 208.8 368 39.7
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 7.7e-51 205.3 362 44.8
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 5.0e-50 202.6 375 43.7
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 3.6e-48 196.4 263 44.9
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 3.0e-47 193.4 363 40.5
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 8.8e-47 191.8 305 48.9
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.5e-46 191.0 394 37.8
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 4.4e-46 189.5 378 37.6
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 9.8e-46 188.3 375 38.1
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 1.7e-45 187.6 381 43.3
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 1.7e-45 187.6 381 43.3
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 8.3e-45 185.3 365 39.2
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 3.1e-44 183.3 365 38.6
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 1.3e-42 177.9 369 36.0
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 8.5e-42 175.3 339 41.9
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 1.5e-41 174.5 338 42.3
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 7.2e-41 172.2 367 37.3
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 7.2e-41 172.2 355 40.6
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 3.6e-40 169.9 364 40.1
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 4.7e-40 169.5 361 40.2
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 3.0e-39 166.8 364 36.8
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 4.0e-39 166.4 363 41.3
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 5.2e-39 166.0 359 41.2
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.5e-38 164.5 330 43.0
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 4.4e-38 162.9 359 41.5
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 6.3e-37 159.1 364 39.0
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 3.1e-36 156.8 178 55.6
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 5.4e-36 156.0 309 38.8
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 9.2e-36 155.2 360 36.4
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 7.7e-35 152.1 310 43.2
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 1.7e-34 151.0 309 38.2
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 2.8e-32 143.7 303 40.3
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 3.6e-32 143.3 377 35.8
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 5.2e-31 139.4 348 35.9
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 8.9e-31 138.7 310 38.4
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 2.0e-30 137.5 285 40.0
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 4.4e-30 136.3 283 39.6
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 7.5e-30 135.6 298 36.6
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 1.3e-29 134.8 327 38.2
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 1.3e-29 134.8 327 37.9
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 1.7e-29 134.4 185 55.1
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 2.9e-29 133.7 289 37.7
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 2.9e-29 133.7 286 39.2
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 7.0e-28 129.0 303 37.6
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 1.6e-27 127.9 242 45.9
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.0e-27 127.5 336 37.2
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 7.8e-27 125.6 363 32.2
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.0e-26 125.2 172 54.7
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 3.3e-25 120.2 286 36.7
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 3.3e-25 120.2 286 36.7
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 3.6e-24 116.7 155 52.3
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 4.0e-23 113.2 302 33.8
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 1.7e-21 107.8 275 34.9
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 2.2e-21 107.5 383 35.2
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 4.9e-21 106.3 352 32.4
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 4.1e-20 103.2 277 34.3
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 1.6e-19 101.3 281 34.9
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 1.3e-18 98.2 289 32.9
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 8.6e-18 95.5 332 31.9
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 5.6e-17 92.8 327 32.1
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 1.4e-15 88.2 279 31.5
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 1.8e-15 87.8 340 30.6
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 4.1e-12 76.6 276 30.4
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 4.1e-12 76.6 276 30.4
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.2e-11 75.1 108 42.6
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 6.0e-11 72.8 288 30.9
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 7.8e-11 72.4 289 31.1
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 3.9e-10 70.1 355 27.9
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 7.3e-09 65.9 140 37.9
Os06g0728500 Oryza sativa ssp. japonica HOM05D060560 ORTHO05D005048 3.6e-08 63.5 380 30.3
A03p63630 Brassica napus HOM05D004420 ORTHO05D005048 4.7e-08 63.2 355 27.6
Sp2g30690 Schrenkiella parvula HOM05D023070 ORTHO05D023654 1.4e-07 61.6 175 36.6
Carub.0008s2852 Capsella rubella HOM05D023070 ORTHO05D023654 5.8e-06 56.2 222 32.4


User provided reference genes

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