Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02172 Eucalyptus grandis HOM05D006671 ORTHO05D008637 0.0e+00 1088.2 532 100.0
PGR119G0898 Punica granatum HOM05D006671 ORTHO05D008637 4.0e-200 701.8 540 63.9
CANSAT56G3116 Cannabis sativa HOM05D006671 ORTHO05D008637 2.0e-196 689.5 537 63.7
Glyma.16G015100 Glycine max HOM05D006671 ORTHO05D008637 3.5e-196 688.7 546 62.8
Glyma.07G047100 Glycine max HOM05D006671 ORTHO05D008637 4.5e-196 688.3 543 63.5
Manes.11G010600 Manihot esculenta HOM05D006671 ORTHO05D008637 4.0e-192 675.2 543 63.0
Thecc.06G048900 Theobroma cacao HOM05D006671 ORTHO05D008637 1.2e-191 673.7 540 62.2
MD09G1171100 Malus domestica HOM05D006671 ORTHO05D008637 4.4e-191 671.8 536 63.2
CiPaw.03G010100 Carya illinoinensis HOM05D006671 ORTHO05D008637 7.5e-191 671.0 547 61.6
CSS0038482 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 9.8e-191 670.6 531 62.7
Atru.chr1.4182 Acer truncatum HOM05D006671 ORTHO05D008637 1.7e-190 669.8 537 64.1
Duzib160G0342 Durio zibethinus HOM05D006671 ORTHO05D008637 1.7e-190 669.8 540 61.9
Prupe.3G029600 Prunus persica HOM05D006671 ORTHO05D008637 2.8e-190 669.1 534 62.4
TPR.G26443 Trifolium pratense HOM05D006671 ORTHO05D008637 3.7e-190 668.7 538 62.3
COL.COLO4_26801 Corchorus olitorius HOM05D006671 ORTHO05D008637 5.4e-189 664.8 539 62.3
Phvul.010G121800 Phaseolus vulgaris HOM05D006671 ORTHO05D008637 9.2e-189 664.1 545 61.7
Gohir.D13G119900 Gossypium hirsutum HOM05D006671 ORTHO05D008637 1.0e-187 660.6 538 61.5
vmacro18708 Vaccinium macrocarpon HOM05D006671 ORTHO05D008637 6.6e-187 657.9 537 60.0
Gorai.013G134300 Gossypium raimondii HOM05D006671 ORTHO05D008637 1.1e-186 657.1 542 60.7
Lalb_Chr10g0101031 Lupinus albus HOM05D006671 ORTHO05D008637 1.5e-186 656.8 542 61.1
TAR623G0926 Trochodendron aralioides HOM05D006671 ORTHO05D008637 1.5e-186 656.8 533 60.4
Potri.001G161100 Populus trichocarpa HOM05D006671 ORTHO05D008637 4.3e-186 655.2 537 61.5
Psat4g165440 Pisum sativum HOM05D006671 ORTHO05D008637 2.8e-185 652.5 538 61.5
Lj3g0013980 Lotus japonicus HOM05D006671 ORTHO05D008637 1.4e-184 650.2 552 60.0
TWI59G0357 Tripterygium wilfordii HOM05D006671 ORTHO05D008637 1.8e-184 649.8 534 62.4
Rhsim08G0246200 Rhododendron simsii HOM05D006671 ORTHO05D008637 3.1e-184 649.0 543 59.9
Medtr8g023620 Medicago truncatula HOM05D006671 ORTHO05D008637 2.9e-182 642.5 540 60.2
Ciclev10025368m.g Citrus clementina HOM05D006671 ORTHO05D008637 3.7e-182 642.1 538 62.3
Nn8g41287 Nelumbo nucifera HOM05D006671 ORTHO05D008637 4.9e-182 641.7 533 58.3
RcHm_v2.0_Chr2g0148251 Rosa chinensis HOM05D006671 ORTHO05D008637 5.6e-178 628.2 533 60.2
Cc04_g00530 Coffea canephora HOM05D006671 ORTHO05D008637 3.6e-177 625.5 536 56.9
Sopen12g024210 Solanum pennellii HOM05D006671 ORTHO05D008637 4.7e-177 625.2 533 57.8
Haze_14039 Corylus avellana HOM05D006671 ORTHO05D008637 1.8e-176 623.2 637 53.8
Solyc12g055740.2 Solanum lycopersicum HOM05D006671 ORTHO05D008637 8.9e-176 620.9 530 58.1
PGSC0003DMG402028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 1.5e-175 620.2 530 58.3
arahy.Tifrunner.gnm1.ann1.NMV212 Arachis hypogaea HOM05D006671 ORTHO05D008637 1.7e-174 616.7 540 57.6
Aqoxy2G04033 Aquilegia oxysepala HOM05D006671 ORTHO05D008637 8.3e-174 614.4 535 56.4
arahy.Tifrunner.gnm1.ann1.YS0GDU Arachis hypogaea HOM05D006671 ORTHO05D008637 1.4e-173 613.6 540 57.4
CAN.G390.42 Capsicum annuum HOM05D006671 ORTHO05D008637 1.2e-172 610.5 532 58.1
Actinidia24409 Actinidia chinensis HOM05D006671 ORTHO05D008637 2.1e-172 609.8 496 60.9
Cpa.g.sc229.10 Carica papaya HOM05D006671 ORTHO05D008637 1.0e-171 607.4 540 58.1
PGSC0003DMG401028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 3.3e-170 602.4 530 57.2
ECA234G0268 Erigeron canadensis HOM05D006671 ORTHO05D008637 7.3e-170 601.3 532 56.4
FvH4_6g36250 Fragaria vesca HOM05D006671 ORTHO05D008637 1.2e-169 600.5 532 58.1
FAN14G1234 Fragaria x ananassa HOM05D006671 ORTHO05D008637 3.6e-169 599.0 532 57.9
Lj5C27T5 Lonicera japonica HOM05D006671 ORTHO05D008637 4.7e-169 598.6 495 59.8
Sc12g0010960 Simmondsia chinensis HOM05D006671 ORTHO05D008637 4.7e-169 598.6 529 56.7
Sabra01G0131200 Salix brachista HOM05D006671 ORTHO05D008637 3.1e-168 595.9 578 55.0
AT1G53710 Arabidopsis thaliana HOM05D006671 ORTHO05D008637 1.3e-166 590.5 526 54.8
Sp1g40250 Schrenkiella parvula HOM05D006671 ORTHO05D008637 1.3e-166 590.5 529 54.8
Thhalv10011378m.g Eutrema salsugineum HOM05D006671 ORTHO05D008637 2.9e-166 589.3 531 54.8
Aa31LG10G1550 Aethionema arabicum HOM05D006671 ORTHO05D008637 1.1e-165 587.4 534 55.2
EL10Ac7g18235 Beta vulgaris HOM05D006671 ORTHO05D008637 1.9e-165 586.6 529 56.1
CARHR044010 Cardamine hirsuta HOM05D006671 ORTHO05D008637 5.4e-165 585.1 534 53.6
DCAR_007665 Daucus carota HOM05D006671 ORTHO05D008637 9.2e-165 584.3 555 53.5
BolC3t21495H Brassica oleracea HOM05D006671 ORTHO05D008637 1.6e-164 583.6 528 54.2
BcaB04g17063 Brassica carinata HOM05D006671 ORTHO05D008637 3.5e-164 582.4 529 53.7
GSVIVG01026409001 Vitis vinifera HOM05D006671 ORTHO05D008637 3.5e-164 582.4 757 44.8
SalBow7G2314 Salvia bowleyana HOM05D006671 ORTHO05D008637 4.6e-164 582.0 532 55.5
AL1G62410 Arabidopsis lyrata HOM05D006671 ORTHO05D008637 7.8e-164 581.3 529 54.8
Migut.D00903 Erythranthe guttata HOM05D006671 ORTHO05D008637 1.7e-163 580.1 534 53.9
Carub.0001s4299 Capsella rubella HOM05D006671 ORTHO05D008637 5.1e-163 578.6 526 53.6
PSO017G0187 Papaver somniferum HOM05D006671 ORTHO05D008637 5.1e-163 578.6 538 55.4
HanXRQChr10g0311581 Helianthus annuus HOM05D006671 ORTHO05D008637 8.6e-163 577.8 532 56.6
FAN09G2187 Fragaria x ananassa HOM05D006671 ORTHO05D008637 2.1e-161 573.2 532 56.2
BraA08t32194Z Brassica rapa HOM05D006671 ORTHO05D008637 3.6e-161 572.4 529 53.7
A08p01430 Brassica napus HOM05D006671 ORTHO05D008637 4.7e-161 572.0 531 54.0
BcaC01g01410 Brassica carinata HOM05D006671 ORTHO05D008637 2.4e-160 569.7 525 53.7
C03p91740 Brassica napus HOM05D006671 ORTHO05D008637 8.9e-160 567.8 525 53.5
MSTRG.9549 Avicennia marina HOM05D006671 ORTHO05D008637 5.8e-159 565.1 530 55.7
Os03g0397300 Oryza sativa ssp. japonica HOM05D006671 ORTHO05D008637 3.8e-158 562.4 529 53.1
HPP92_002242 Vanilla planifolia HOM05D006671 ORTHO05D008637 4.9e-158 562.0 530 55.1
Zm00001eb392730 Zea mays HOM05D006671 ORTHO05D008637 1.2e-156 557.4 529 53.7
SGA_v2.0_scaffold4G02101 Striga asiatica HOM05D006671 ORTHO05D008637 7.3e-154 548.1 535 54.4
MBI13_g05970_MAGBIO Magnolia biondii HOM05D006671 ORTHO05D008637 9.6e-154 547.7 481 58.0
FAN14G2634 Fragaria x ananassa HOM05D006671 ORTHO05D008637 4.0e-152 542.3 532 54.9
CDE06G0010 Ceratophyllum demersum HOM05D006671 ORTHO05D008637 1.4e-149 533.9 477 56.0
Ah.08g217540 Amaranthus hybridus HOM05D006671 ORTHO05D008637 1.9e-149 533.5 532 53.2
Lsat_1_v5_gn_5_137600 Lactuca sativa HOM05D006671 ORTHO05D008637 2.7e-148 529.6 523 53.5
AUR62001377 Chenopodium quinoa HOM05D006671 ORTHO05D008637 6.0e-148 528.5 482 54.8
AUR62044064 Chenopodium quinoa HOM05D006671 ORTHO05D008637 4.8e-145 518.8 474 55.3
PSO170G0973 Papaver somniferum HOM05D006671 ORTHO05D008637 1.2e-143 514.2 478 55.2
Actinidia33812 Actinidia chinensis HOM05D006671 ORTHO05D008637 4.5e-143 512.3 521 53.0
Nitab4.5_0000357g0220 Nicotiana tabacum HOM05D006671 ORTHO05D008637 3.2e-141 506.1 531 51.4
unitig_699.g19656 Utricularia gibba HOM05D006671 ORTHO05D001254 1.3e-139 500.7 534 50.9
Dinv20369 Davidia involucrata HOM05D006671 ORTHO05D008637 3.0e-139 499.6 364 65.9
Nitab4.5_0003469g0010 Nicotiana tabacum HOM05D006671 ORTHO05D008637 2.1e-137 493.4 539 50.1
SEGI_35568 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 2.1e-129 466.8 435 54.0
Peaxi162Scf00177g00616 Petunia axillaris HOM05D006671 ORTHO05D008637 1.5e-119 434.1 532 47.4
Pp3c21_8010 Physcomitrium patens HOM05D006671 ORTHO05D008637 1.3e-118 431.0 537 44.9
SMO347G0345 Selaginella moellendorffii HOM05D006671 ORTHO05D008637 1.8e-112 410.6 533 43.7
AagrBONN_evm.TU.Sc2ySwM_362.1979 Anthoceros agrestis HOM05D006671 ORTHO05D008637 1.0e-110 404.8 538 43.7
Ca_23471_v3 Cicer arietinum L. HOM05D006671 ORTHO05D008637 3.0e-107 393.3 471 48.2
QL03p047059 Quercus lobata HOM05D006671 ORTHO05D008637 4.8e-105 386.0 262 70.6
VMungo0331G0057 Vigna mungo HOM05D006671 ORTHO05D008637 1.4e-104 384.4 298 63.4
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 7.2e-101 372.1 370 51.1
Hma1.2p1_1104F.1_g257490 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 1.1e-96 358.2 256 66.4
QL03p047068 Quercus lobata HOM05D006671 ORTHO05D008637 6.8e-91 339.0 288 61.1
Mapoly0048s0109 Marchantia polymorpha HOM05D006671 ORTHO05D008637 7.7e-87 325.5 534 36.1
Hma1.2p1_1104F.1_g257500 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 3.2e-85 320.1 268 59.7
Gohir.A13G116750 Gossypium hirsutum HOM05D006671 ORTHO05D008637 8.0e-76 288.9 202 65.8
Oeu006761.2 Olea europaea HOM05D006671 ORTHO05D008637 4.9e-73 279.6 282 53.5
Gohir.A13G116801 Gossypium hirsutum HOM05D006671 ORTHO05D008637 3.2e-72 276.9 254 58.7
BcaNung02916 Brassica carinata HOM05D006671 ORTHO05D008637 7.0e-72 275.8 494 36.6
FAN02G1271 Fragaria x ananassa HOM05D006671 ORTHO05D008637 7.8e-71 272.3 311 50.5
MD17G1156100 Malus domestica HOM05D006671 ORTHO05D008637 4.9e-65 253.1 440 40.2
THA.LOC104803433 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 1.0e-62 245.4 180 63.9
ATR0006G018 Amborella trichopoda HOM05D006671 ORTHO05D008637 1.7e-57 228.0 267 47.9
SEGI_04788 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 6.0e-55 219.5 268 48.1
Actinidia21851 Actinidia chinensis HOM05D006671 ORTHO05D008637 4.6e-47 193.4 201 53.7
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 6.0e-39 166.4 279 37.3
MCO09G741 Micromonas commoda HOM05D006671 ORTHO05D008637 5.1e-38 163.3 428 30.6
Hund05690 Selenicereus undatus HOM05D006671 ORTHO05D008637 1.1e-37 162.2 126 65.9
Actinidia21852 Actinidia chinensis HOM05D006671 ORTHO05D008637 6.2e-36 156.4 120 60.8
Cfa022026 Carpinus fangiana HOM05D002393 ORTHO05D123579 5.6e-21 106.7 422 27.0
FAN05G4676 Fragaria x ananassa HOM05D006671 ORTHO05D008637 6.2e-20 103.2 109 53.2
Lsat_1_v5_gn_2_122021 Lactuca sativa HOM05D006671 ORTHO05D008637 5.5e-16 90.1 128 43.0
AUR62027724 Chenopodium quinoa HOM05D008167 ORTHO05D010296 1.3e-14 85.5 384 22.7
EL10Ac1g01257 Beta vulgaris HOM05D008167 ORTHO05D010296 2.1e-12 78.2 316 23.7
BcaC09g48416 Brassica carinata HOM05D006671 ORTHO05D027459 3.4e-10 70.9 75 50.7
C01p50010 Brassica napus HOM05D010519 ORTHO05D027459 3.4e-10 70.9 75 50.7
BolC1t04958H Brassica oleracea HOM05D010519 ORTHO05D027459 3.4e-10 70.9 75 50.7
CSS0027715 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 1.7e-09 68.6 45 62.2
Lsat_1_v5_gn_0_9700 Lactuca sativa HOM05D008167 ORTHO05D010296 5.0e-09 67.0 388 22.2
Pp3c20_15640 Physcomitrium patens HOM05D008167 ORTHO05D010296 8.5e-09 66.2 323 24.8
Manes.02G154800 Manihot esculenta HOM05D008167 ORTHO05D010296 5.5e-08 63.5 342 23.4
Os06g0222800 Oryza sativa ssp. japonica HOM05D008167 ORTHO05D010296 2.1e-07 61.6 350 23.1
TAR628G0982 Trochodendron aralioides HOM05D008167 ORTHO05D010296 1.3e-06 58.9 415 20.7
Potri.002G093800 Populus trichocarpa HOM05D008167 ORTHO05D010296 1.8e-06 58.5 343 22.4
PSO133G0102 Papaver somniferum HOM05D008167 ORTHO05D010296 2.3e-06 58.2 337 21.1
MBI02_g36661_MAGBIO Magnolia biondii HOM05D008167 ORTHO05D010296 5.1e-06 57.0 340 22.1


User provided reference genes

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