Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 2.1e-53 212.2 117 100.0
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 8.9e-20 100.5 122 54.1
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 8.9e-20 100.5 122 54.1
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 8.9e-20 100.5 67 83.6
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 1.5e-19 99.8 67 82.1
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 5.8e-19 97.8 63 84.1
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 9.8e-19 97.1 70 75.7
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 1.7e-18 96.3 66 80.3
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 1.7e-18 96.3 69 76.8
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 2.2e-18 95.9 67 73.1
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.9e-18 95.5 70 74.3
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 2.9e-18 95.5 67 77.6
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 3.7e-18 95.1 67 77.6
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 4.9e-18 94.7 63 82.5
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 6.4e-18 94.4 67 76.1
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.4e-17 93.2 67 76.1
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 1.9e-17 92.8 66 75.8
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 2.4e-17 92.4 64 78.1
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.1e-17 91.7 78 67.9
DCAR_010979 Daucus carota HOM05D001568 ORTHO05D004404 1.2e-16 90.1 73 74.0
DCAR_010982 Daucus carota HOM05D001568 ORTHO05D004404 1.2e-16 90.1 73 74.0
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 1.2e-16 90.1 66 75.8
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.2e-16 90.1 67 74.6
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.6e-16 89.7 67 76.1
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 2.7e-16 89.0 70 74.3
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 2.7e-16 89.0 65 76.9
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 3.5e-16 88.6 68 75.0
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 6.0e-16 87.8 68 76.5
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 7.8e-16 87.4 60 78.3
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 1.0e-15 87.0 74 70.3
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.3e-15 86.7 57 82.5
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 1.3e-15 86.7 64 73.4
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 1.3e-15 86.7 64 73.4
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.3e-15 86.7 67 73.1
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 3.0e-15 85.5 65 75.4
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 6.6e-15 84.3 68 70.6
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 6.6e-15 84.3 68 70.6
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 8.6e-15 84.0 72 65.3
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 1.1e-14 83.6 65 72.3
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 1.1e-14 83.6 65 72.3
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 1.5e-14 83.2 64 73.4
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 3.3e-14 82.0 66 66.7
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 3.3e-14 82.0 64 71.9
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.6e-13 79.7 74 64.9
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 2.1e-13 79.3 69 71.0
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 2.8e-13 79.0 64 70.3
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 3.6e-13 78.6 74 64.9
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 4.7e-13 78.2 62 66.1
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 8.1e-13 77.4 66 65.2
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.8e-12 76.3 74 60.8
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.3e-12 75.9 66 66.7
Lsat_1_v5_gn_3_94821 Lactuca sativa HOM05D001568 ORTHO05D004404 3.1e-12 75.5 74 63.5
Lsat_1_v5_gn_4_175441 Lactuca sativa HOM05D001568 ORTHO05D004404 6.8e-12 74.3 60 75.0
Sed0003724 Sechium edule HOM05D001568 ORTHO05D004404 6.8e-12 74.3 70 58.6
ECA246G2394 Erigeron canadensis HOM05D001568 ORTHO05D004404 8.9e-12 73.9 70 64.3
arahy.Tifrunner.gnm1.ann1.IG7GQE Arachis hypogaea HOM05D001568 ORTHO05D004404 1.5e-11 73.2 74 62.2
CiPaw.03G006700 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.5e-11 73.2 59 72.9
arahy.Tifrunner.gnm1.ann1.R2NHXZ Arachis hypogaea HOM05D001568 ORTHO05D004404 2.0e-11 72.8 74 58.1
HanXRQChr10g0283701 Helianthus annuus HOM05D001568 ORTHO05D004404 5.8e-11 71.2 74 59.5
Ah.10g037380 Amaranthus hybridus HOM05D001568 ORTHO05D004404 9.9e-11 70.5 69 60.9
Sed0014020 Sechium edule HOM05D001568 ORTHO05D004404 9.9e-11 70.5 69 60.9
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 3.7e-10 68.6 60 61.7
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 3.7e-10 68.6 67 58.2
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 4.9e-10 68.2 60 61.7
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 6.4e-10 67.8 61 63.9
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 6.4e-10 67.8 60 61.7
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 6.4e-10 67.8 61 63.9
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 8.3e-10 67.4 60 60.0
Potri.004G105800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.1e-09 67.0 75 50.7
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.4e-09 66.6 67 58.2
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 1.4e-09 66.6 60 60.0
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 1.4e-09 66.6 59 62.7
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.9e-09 66.2 66 60.6
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 1.9e-09 66.2 60 60.0
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 1.9e-09 66.2 60 60.0
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 2.4e-09 65.9 65 58.5
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 2.4e-09 65.9 59 61.0
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 3.2e-09 65.5 61 60.7
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 3.2e-09 65.5 60 58.3
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 3.2e-09 65.5 60 58.3
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 3.2e-09 65.5 59 61.0
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 3.2e-09 65.5 62 62.9
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 4.1e-09 65.1 60 60.0
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 4.1e-09 65.1 60 60.0
MSTRG.23836 Avicennia marina HOM05D001568 ORTHO05D004404 5.4e-09 64.7 96 43.8
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 5.4e-09 64.7 57 61.4
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 5.4e-09 64.7 60 56.7
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 7.1e-09 64.3 60 56.7
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 9.2e-09 63.9 60 58.3
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.2e-08 63.5 61 60.7
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 1.6e-08 63.2 60 58.3
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 1.6e-08 63.2 65 56.9
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.6e-08 63.2 61 59.0
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.6e-08 63.2 64 57.8
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.6e-08 63.2 60 55.0
BolC6t39129H Brassica oleracea HOM05D001568 ORTHO05D004404 2.1e-08 62.8 85 44.7
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 2.1e-08 62.8 63 57.1
Thhalv10019331m.g Eutrema salsugineum HOM05D001568 ORTHO05D004404 2.1e-08 62.8 84 47.6
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 2.7e-08 62.4 61 55.7
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.7e-08 62.4 59 61.0
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.7e-08 62.4 59 61.0
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.7e-08 62.4 61 59.0
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 2.7e-08 62.4 59 57.6
A07p33830 Brassica napus HOM05D001568 ORTHO05D004404 3.5e-08 62.0 86 44.2
C06p43090 Brassica napus HOM05D001568 ORTHO05D004404 3.5e-08 62.0 87 43.7
BraA07t31009Z Brassica rapa HOM05D001568 ORTHO05D004404 3.5e-08 62.0 86 44.2
Sp5g22130 Schrenkiella parvula HOM05D001568 ORTHO05D004404 3.5e-08 62.0 84 46.4
Carub.0002s1347 Capsella rubella HOM05D001568 ORTHO05D004404 4.6e-08 61.6 41 73.2
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 4.6e-08 61.6 59 61.0
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 4.6e-08 61.6 59 59.3
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 4.6e-08 61.6 59 57.6
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 4.6e-08 61.6 54 61.1
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 4.6e-08 61.6 59 57.6
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 4.6e-08 61.6 59 57.6
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 6.0e-08 61.2 62 58.1
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 6.0e-08 61.2 54 61.1
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 6.0e-08 61.2 59 55.9
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 6.0e-08 61.2 59 57.6
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 7.8e-08 60.8 57 57.9
AL2G25700 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 1.0e-07 60.5 84 45.2
CARHR059650 Cardamine hirsuta HOM05D001568 ORTHO05D004404 1.0e-07 60.5 41 70.7
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 1.0e-07 60.5 62 58.1
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 1.0e-07 60.5 60 58.3
A02p14040 Brassica napus HOM05D001568 ORTHO05D004404 1.3e-07 60.1 41 70.7
BraA02t06465Z Brassica rapa HOM05D001568 ORTHO05D004404 1.3e-07 60.1 41 70.7
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 1.3e-07 60.1 58 60.3
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.3e-07 60.1 64 56.2
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 1.3e-07 60.1 61 59.0
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 1.7e-07 59.7 57 56.1
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 1.7e-07 59.7 60 56.7
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.7e-07 59.7 72 51.4
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 1.7e-07 59.7 72 51.4
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 2.3e-07 59.3 61 60.7
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 2.3e-07 59.3 70 55.7
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 2.3e-07 59.3 111 40.5
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 3.0e-07 58.9 56 58.9
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 3.0e-07 58.9 60 56.7
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 3.0e-07 58.9 51 70.6
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 3.9e-07 58.5 61 57.4
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 3.9e-07 58.5 61 57.4
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 6.6e-07 57.8 66 54.5
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 6.6e-07 57.8 58 56.9
BolC2t08417H Brassica oleracea HOM05D001568 ORTHO05D004404 8.6e-07 57.4 41 68.3
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 8.6e-07 57.4 56 64.3
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 8.6e-07 57.4 58 60.3
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 8.6e-07 57.4 59 61.0
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 8.6e-07 57.4 51 60.8
C02p22640 Brassica napus HOM05D001568 ORTHO05D004404 1.9e-06 56.2 84 44.0
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 1.9e-06 56.2 55 63.6
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 1.9e-06 56.2 61 54.1
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 3.3e-06 55.5 58 58.6
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 5.6e-06 54.7 53 62.3


User provided reference genes

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