Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 4.2e-163 578.2 335 100.0
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 1.6e-66 257.3 205 72.7
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 4.4e-64 249.2 203 68.5
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 5.8e-64 248.8 202 66.3
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 1.7e-63 247.3 201 69.7
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 1.7e-63 247.3 303 54.8
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 1.4e-62 244.2 198 70.7
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 2.4e-62 243.4 203 70.0
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 3.2e-62 243.0 216 66.7
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 4.1e-62 242.7 216 65.3
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 1.2e-61 241.1 267 57.3
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 1.6e-61 240.7 234 64.5
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 2.1e-61 240.4 203 66.0
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 7.8e-61 238.4 218 65.6
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 7.8e-61 238.4 204 66.7
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 1.7e-60 237.3 246 61.4
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 1.7e-60 237.3 203 66.5
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 2.3e-60 236.9 198 69.7
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 2.3e-60 236.9 216 63.9
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 3.0e-60 236.5 235 62.1
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 3.9e-60 236.1 271 57.2
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 5.1e-60 235.7 278 54.3
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 1.1e-59 234.6 196 69.9
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 3.3e-59 233.0 193 70.5
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 9.6e-59 231.5 218 62.8
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 9.6e-59 231.5 236 59.7
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 1.2e-58 231.1 233 62.7
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 1.6e-58 230.7 203 65.5
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 1.6e-58 230.7 210 64.8
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.8e-58 229.9 213 63.8
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 3.6e-58 229.6 273 54.6
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 8.1e-58 228.4 238 58.8
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 1.8e-57 227.3 194 66.0
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.4e-57 226.9 213 64.3
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 3.1e-57 226.5 243 60.1
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 5.2e-57 225.7 211 64.0
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 5.2e-57 225.7 261 57.1
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 1.2e-56 224.6 261 57.9
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 3.4e-56 223.0 261 57.5
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 5.8e-56 222.2 251 56.2
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 7.6e-56 221.9 222 60.4
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 9.9e-56 221.5 236 58.5
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 1.3e-55 221.1 239 57.3
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 2.2e-55 220.3 195 65.1
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 2.9e-55 219.9 257 54.5
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 4.9e-55 219.2 237 56.1
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 6.4e-55 218.8 259 55.2
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 8.4e-55 218.4 195 61.5
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 1.1e-54 218.0 212 62.3
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 1.4e-54 217.6 220 59.5
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.9e-54 217.2 245 54.7
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 5.4e-54 215.7 270 52.6
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 1.2e-53 214.5 179 68.2
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 1.6e-53 214.2 258 54.7
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 2.1e-53 213.8 224 60.3
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.0e-52 211.5 232 56.0
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 1.0e-52 211.5 193 63.2
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 1.3e-52 211.1 235 57.0
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 3.0e-52 209.9 227 55.9
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 3.9e-52 209.5 222 56.3
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 3.9e-52 209.5 222 56.3
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 3.3e-51 206.5 251 52.6
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 4.3e-51 206.1 188 63.3
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 5.6e-51 205.7 230 58.3
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 5.6e-51 205.7 216 58.3
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 1.6e-50 204.1 249 54.2
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 2.8e-50 203.4 188 63.3
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 2.8e-50 203.4 210 59.0
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 3.6e-50 203.0 280 48.9
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 4.8e-50 202.6 255 52.9
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 6.2e-50 202.2 208 59.1
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 1.1e-49 201.4 245 54.3
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 4.0e-49 199.5 220 54.1
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 2.0e-48 197.2 246 53.7
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 4.5e-48 196.1 205 58.0
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 9.9e-48 194.9 213 56.3
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 9.9e-48 194.9 237 54.9
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 9.9e-48 194.9 237 54.9
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 9.9e-48 194.9 206 56.8
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 1.3e-47 194.5 248 52.0
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 3.8e-47 193.0 196 58.2
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 1.4e-46 191.0 184 58.7
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 1.4e-46 191.0 168 64.9
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 1.9e-46 190.7 184 58.7
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 2.4e-46 190.3 237 52.3
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 2.4e-46 190.3 176 61.9
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 3.2e-46 189.9 248 52.8
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 4.2e-46 189.5 264 48.9
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 5.4e-46 189.1 235 54.0
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 1.2e-45 188.0 238 50.8
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 1.6e-45 187.6 245 51.0
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 2.1e-45 187.2 274 49.3
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 1.3e-44 184.5 274 48.9
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 1.3e-44 184.5 234 50.4
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 2.3e-44 183.7 179 58.1
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 3.0e-44 183.3 245 51.0
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 5.1e-44 182.6 239 49.8
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 6.7e-44 182.2 257 45.1
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 1.9e-43 180.6 263 49.4
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 4.3e-43 179.5 201 54.7
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 5.6e-43 179.1 239 50.2
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 5.6e-43 179.1 192 54.2
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 2.1e-42 177.2 238 47.5
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 2.8e-42 176.8 252 48.8
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 4.8e-42 176.0 248 49.6
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 8.1e-42 175.3 144 68.1
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 1.8e-41 174.1 192 58.9
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 2.4e-41 173.7 274 44.9
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 3.1e-41 173.3 229 50.7
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 5.3e-41 172.6 269 42.8
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 7.6e-40 168.7 182 54.4
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 2.2e-39 167.2 229 50.2
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 2.9e-39 166.8 121 72.7
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 1.1e-38 164.9 184 53.8
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 3.2e-38 163.3 275 45.8
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 4.2e-38 162.9 146 65.1
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 2.3e-36 157.1 249 47.4
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 2.3e-36 157.1 185 57.3
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 1.5e-35 154.5 186 53.2
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 3.3e-35 153.3 237 43.9
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 5.6e-35 152.5 194 51.0
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 9.6e-35 151.8 182 53.3
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 3.7e-34 149.8 175 52.0
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 6.2e-34 149.1 174 52.3
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.4e-33 147.9 175 54.9
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 1.5e-32 144.4 208 48.6
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 3.4e-32 143.3 130 61.5
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 1.4e-30 137.9 122 61.5
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 2.3e-28 130.6 175 51.4
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 9.0e-25 118.6 123 58.5
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 1.3e-23 114.8 245 41.2
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 2.9e-23 113.6 209 38.3
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 2.7e-21 107.1 102 62.7
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 4.6e-21 106.3 194 37.6
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 3.7e-18 96.7 105 55.2
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 2.4e-17 94.0 67 71.6
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 2.6e-16 90.5 95 54.7
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 2.6e-16 90.5 114 53.5
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 4.5e-16 89.7 83 61.4
Eucgr.I02096 Eucalyptus grandis HOM05D005159 ORTHO05D006237 1.1e-14 85.1 101 58.4
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 1.4e-14 84.7 193 34.7
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 8.8e-12 75.5 176 36.4
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 2.2e-10 70.9 62 62.9
CBR_g57080 Chara braunii HOM05D002282 ORTHO05D002403 3.7e-10 70.1 246 28.5
MD12G1094800 Malus domestica HOM05D002282 ORTHO05D002403 1.1e-09 68.6 62 66.1
MCO14G074 Micromonas commoda HOM05D002282 ORTHO05D002403 1.4e-09 68.2 124 37.1
Cre12.g538500 Chlamydomonas reinhardtii HOM05D002282 ORTHO05D002403 2.4e-09 67.4 153 34.6
SMO361G0163 Selaginella moellendorffii HOM05D002282 ORTHO05D002403 4.1e-09 66.6 269 29.4
CiPaw.01G144200 Carya illinoinensis HOM05D002282 ORTHO05D002403 6.5e-07 59.3 137 33.6
Nn8g40612 Nelumbo nucifera HOM05D002282 ORTHO05D002403 4.2e-06 56.6 134 30.6


User provided reference genes

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