Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 4.0e-134 481.5 251 100.0
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 7.1e-91 337.8 248 65.3
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 3.5e-90 335.5 247 65.2
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 3.5e-90 335.5 247 65.2
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 3.5e-90 335.5 247 64.8
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 7.9e-90 334.3 248 62.9
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 1.0e-89 334.0 248 64.5
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 1.3e-89 333.6 248 65.7
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 3.3e-88 328.9 248 65.3
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 3.3e-88 328.9 248 64.9
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 4.3e-88 328.6 232 74.1
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 4.3e-88 328.6 248 64.5
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 5.6e-88 328.2 247 63.6
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 7.3e-88 327.8 248 62.9
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 9.6e-88 327.4 244 63.9
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 1.6e-87 326.6 248 63.3
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 2.1e-87 326.2 247 63.6
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 2.1e-87 326.2 247 64.4
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 6.2e-87 324.7 248 61.7
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 8.1e-87 324.3 249 63.1
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 8.1e-87 324.3 248 61.3
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 1.4e-86 323.6 241 63.5
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 3.1e-86 322.4 241 63.5
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 5.3e-86 321.6 245 64.1
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 9.0e-86 320.9 232 73.7
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 9.0e-86 320.9 241 63.1
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 1.2e-85 320.5 249 63.9
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 1.5e-85 320.1 249 61.0
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 2.0e-85 319.7 245 62.9
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 5.8e-85 318.2 244 63.9
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 7.6e-85 317.8 241 63.1
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 9.9e-85 317.4 247 61.1
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 6.4e-84 314.7 247 63.2
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 1.4e-83 313.5 248 62.1
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 1.4e-83 313.5 248 60.5
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 3.2e-83 312.4 245 59.6
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 4.2e-83 312.0 244 61.9
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 7.1e-83 311.2 250 61.2
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 9.3e-83 310.8 248 61.7
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 1.6e-82 310.1 249 61.8
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 2.7e-82 309.3 248 60.5
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 2.7e-82 309.3 248 60.9
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 2.7e-82 309.3 245 61.2
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 3.5e-82 308.9 247 61.1
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 1.8e-81 306.6 235 63.4
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 5.1e-81 305.1 248 58.5
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 6.7e-81 304.7 248 60.1
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 3.3e-80 302.4 248 60.1
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 4.3e-80 302.0 240 62.5
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 5.6e-80 301.6 235 62.6
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 7.4e-80 301.2 246 62.6
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 9.6e-80 300.8 235 61.7
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 9.6e-80 300.8 242 59.1
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 1.3e-79 300.4 247 56.7
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 1.6e-79 300.1 246 62.2
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 2.8e-79 299.3 251 60.2
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 2.8e-79 299.3 241 60.6
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.8e-79 299.3 235 61.7
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 8.1e-79 297.7 250 60.0
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 1.1e-78 297.4 248 60.1
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 1.1e-78 297.4 246 61.4
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 1.4e-78 297.0 235 61.7
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 1.8e-78 296.6 246 60.2
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 2.4e-78 296.2 248 59.7
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 2.4e-78 296.2 242 62.4
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 3.1e-78 295.8 248 60.1
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 3.1e-78 295.8 248 59.3
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 4.0e-78 295.4 248 60.1
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 4.0e-78 295.4 248 60.1
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 4.0e-78 295.4 248 58.9
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 5.3e-78 295.0 248 59.3
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 1.2e-77 293.9 234 62.4
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 1.5e-77 293.5 239 61.9
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 2.0e-77 293.1 248 57.7
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 2.6e-77 292.7 248 58.1
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 3.4e-77 292.4 248 57.7
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 4.5e-77 292.0 248 58.1
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 1.7e-76 290.0 248 56.5
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 2.2e-76 289.7 248 57.7
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 2.2e-76 289.7 236 61.4
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 2.2e-76 289.7 241 58.1
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 3.8e-76 288.9 243 56.8
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 3.8e-76 288.9 248 56.9
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 3.8e-76 288.9 235 61.7
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 4.9e-76 288.5 248 58.1
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 2.5e-75 286.2 244 57.4
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 2.7e-74 282.7 251 56.2
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 3.5e-74 282.3 248 55.2
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 3.9e-73 278.9 248 57.7
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 3.3e-72 275.8 249 57.8
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 6.2e-71 271.6 242 56.6
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 6.2e-71 271.6 249 56.6
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 6.2e-71 271.6 246 54.9
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 8.2e-71 271.2 244 57.4
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 6.9e-70 268.1 247 53.8
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.4e-69 265.8 257 54.1
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 3.4e-69 265.8 242 54.1
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.9e-68 262.7 237 56.1
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 5.0e-68 261.9 248 54.8
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 9.3e-67 257.7 222 55.0
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 6.1e-66 255.0 251 51.0
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.1e-62 242.7 226 56.2
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 5.3e-62 241.9 238 49.6
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 5.3e-62 241.9 224 55.4
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 5.9e-61 238.4 209 56.5
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 1.3e-60 237.3 235 50.6
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 1.7e-60 236.9 235 52.3
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.4e-59 233.8 195 59.0
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 2.7e-58 229.6 235 48.9
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 1.4e-57 227.3 236 47.9
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.0e-56 223.4 157 73.2
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 6.3e-55 218.4 177 59.3
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 2.2e-52 209.9 234 43.6
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.9e-51 206.8 205 54.6
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.2e-50 204.1 175 57.7
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 5.1e-49 198.7 175 55.4
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 2.0e-48 196.8 238 45.4
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.7e-47 193.7 175 58.9
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 2.2e-47 193.4 170 54.7
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 2.2e-47 193.4 248 43.1
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 6.3e-47 191.8 162 59.3
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.1e-46 189.5 191 52.9
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.5e-45 185.7 239 43.9
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 1.1e-43 181.0 226 42.5
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 1.4e-41 174.1 242 39.7
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 1.6e-37 160.6 110 66.4
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.0e-36 157.9 110 65.5
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 9.4e-35 151.4 209 40.7
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 8.3e-31 138.3 233 37.3
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 4.7e-26 122.5 140 47.1
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 1.4e-25 120.9 168 41.1
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 4.0e-25 119.4 76 73.7
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 1.5e-24 117.5 77 70.1
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 2.7e-21 106.7 233 31.8
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 2.5e-19 100.1 108 48.1
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 2.1e-18 97.1 241 30.7
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 5.7e-16 89.0 146 37.0
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 5.7e-16 89.0 146 37.0
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.3e-15 87.8 49 79.6
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 3.7e-15 86.3 146 35.6
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 7.0e-14 82.0 51 70.6
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 3.5e-13 79.7 108 42.6
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 4.6e-13 79.3 110 40.9
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 1.0e-12 78.2 49 67.3
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 1.5e-11 74.3 240 23.8
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 1.6e-10 70.9 47 66.0
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 6.2e-10 68.9 229 26.2
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 8.0e-10 68.6 174 29.3
PRCOL_00005781 Prasinoderma coloniale HOM05D053327 ORTHO05D048986 8.9e-09 65.1 179 31.8
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 1.5e-08 64.3 40 67.5
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 8.3e-07 58.5 228 24.6
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 1.9e-06 57.4 83 37.3
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 5.4e-06 55.8 83 37.3


User provided reference genes

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