Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I02003 Eucalyptus grandis HOM05D004089 ORTHO05D004687 2.7e-161 572.0 301 100.0
Haze_14490 Corylus avellana HOM05D004089 ORTHO05D004687 1.2e-28 131.3 320 35.9
QL02p084965 Quercus lobata HOM05D004089 ORTHO05D004687 1.3e-27 127.9 306 34.6
CiPaw.03G021500 Carya illinoinensis HOM05D004089 ORTHO05D004687 4.3e-26 122.9 296 36.8
CSS0037629 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 7.3e-26 122.1 307 33.2
GSVIVG01011469001 Vitis vinifera HOM05D004089 ORTHO05D004687 2.1e-25 120.6 320 34.4
Atru.chr8.335 Acer truncatum HOM05D004089 ORTHO05D004687 6.2e-25 119.0 259 37.1
Potri.004G102800 Populus trichocarpa HOM05D004089 ORTHO05D004687 6.2e-25 119.0 292 34.6
CSS0014802 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 8.1e-25 118.6 307 32.9
Manes.01G100800 Manihot esculenta HOM05D004089 ORTHO05D004687 5.3e-24 115.9 267 38.2
CSS0014968 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 9.0e-24 115.2 306 33.0
Dinv11500 Davidia involucrata HOM05D001066 ORTHO05D000891 2.0e-23 114.0 286 35.0
QL10p017912 Quercus lobata HOM05D004089 ORTHO05D004687 4.5e-23 112.8 297 33.0
Aqoxy3G03505 Aquilegia oxysepala HOM05D004089 ORTHO05D004687 5.8e-23 112.5 299 31.1
Sabra04G0077800 Salix brachista HOM05D004089 ORTHO05D004687 5.8e-23 112.5 280 37.9
Duzib264G0571 Durio zibethinus HOM05D004089 ORTHO05D004687 1.3e-22 111.3 301 35.9
Thecc.03G094700 Theobroma cacao HOM05D004089 ORTHO05D004687 1.7e-22 110.9 310 33.9
TAR629G0233 Trochodendron aralioides HOM05D004089 ORTHO05D004687 6.4e-22 109.0 295 32.5
MD06G1197900 Malus domestica HOM05D004089 ORTHO05D004687 1.4e-21 107.8 300 32.7
Manes.14G082100 Manihot esculenta HOM05D004089 ORTHO05D004687 1.9e-21 107.5 317 31.5
Nn3g17343 Nelumbo nucifera HOM05D004089 ORTHO05D004687 1.9e-21 107.5 326 33.1
BraA03t13814Z Brassica rapa HOM05D004089 ORTHO05D004687 5.4e-21 105.9 289 31.8
Lj5P107T92 Lonicera japonica HOM05D004089 ORTHO05D004687 5.4e-21 105.9 314 32.8
CiPaw.12G011700 Carya illinoinensis HOM05D004089 ORTHO05D004687 7.1e-21 105.5 321 30.5
A03p46950 Brassica napus HOM05D004089 ORTHO05D004687 9.3e-21 105.1 289 31.8
COL.COLO4_00682 Corchorus olitorius HOM05D004089 ORTHO05D004687 9.3e-21 105.1 297 33.0
Glyma.06G196700 Glycine max HOM05D004089 ORTHO05D004687 9.3e-21 105.1 306 31.0
Prupe.5G198800 Prunus persica HOM05D004089 ORTHO05D004687 9.3e-21 105.1 307 32.6
Thecc.04G088100 Theobroma cacao HOM05D004089 ORTHO05D004687 1.2e-20 104.8 291 36.8
Glyma.05G024600 Glycine max HOM05D004089 ORTHO05D004687 1.6e-20 104.4 303 31.4
MD14G1205500 Malus domestica HOM05D004089 ORTHO05D004687 1.6e-20 104.4 300 31.0
AT5G61340 Arabidopsis thaliana HOM05D004089 ORTHO05D004687 2.1e-20 104.0 300 32.0
Dinv10661 Davidia involucrata HOM05D004089 ORTHO05D004687 2.1e-20 104.0 298 34.2
Duzib205G1783 Durio zibethinus HOM05D004089 ORTHO05D004687 2.1e-20 104.0 307 32.6
PSO017G6425 Papaver somniferum HOM05D004089 ORTHO05D004687 2.7e-20 103.6 305 32.8
PSO063G0630 Papaver somniferum HOM05D004089 ORTHO05D004687 3.5e-20 103.2 314 28.0
PGR004G1946 Punica granatum HOM05D004089 ORTHO05D004687 3.5e-20 103.2 277 33.6
RcHm_v2.0_Chr7g0182161 Rosa chinensis HOM05D004089 ORTHO05D004687 3.5e-20 103.2 297 31.6
DCAR_026035 Daucus carota HOM05D004089 ORTHO05D004687 4.6e-20 102.8 294 33.0
Glyma.17G102700 Glycine max HOM05D004089 ORTHO05D004687 4.6e-20 102.8 296 30.7
Rhsim08G0151100 Rhododendron simsii HOM05D004089 ORTHO05D004687 4.6e-20 102.8 313 30.7
BolC7t45022H Brassica oleracea HOM05D004089 ORTHO05D004687 6.0e-20 102.4 289 32.2
FAN08G0374 Fragaria x ananassa HOM05D004089 ORTHO05D004687 6.0e-20 102.4 295 31.5
Glyma.04G165800 Glycine max HOM05D004089 ORTHO05D004687 6.0e-20 102.4 305 30.8
Lsat_1_v5_gn_4_109001 Lactuca sativa HOM05D004089 ORTHO05D004687 7.9e-20 102.1 283 29.3
BcaC03g18095 Brassica carinata HOM05D004089 ORTHO05D004687 1.0e-19 101.7 291 33.3
Duzib068G1131 Durio zibethinus HOM05D004089 ORTHO05D004687 1.3e-19 101.3 299 31.1
FAN13G1369 Fragaria x ananassa HOM05D004089 ORTHO05D004687 2.3e-19 100.5 295 30.8
PSO478G2558 Papaver somniferum HOM05D004089 ORTHO05D004687 2.3e-19 100.5 329 32.2
A09p07290 Brassica napus HOM05D004089 ORTHO05D004687 3.9e-19 99.8 289 30.8
TPR.G2017 Trifolium pratense HOM05D004089 ORTHO05D004687 3.9e-19 99.8 320 29.4
Haze_07654 Corylus avellana HOM05D004089 ORTHO05D004687 5.1e-19 99.4 302 29.5
MSTRG.11370 Avicennia marina HOM05D004089 ORTHO05D004687 6.7e-19 99.0 316 30.1
FvH4_5g14500 Fragaria vesca HOM05D004089 ORTHO05D004687 6.7e-19 99.0 295 30.2
FAN18G2014 Fragaria x ananassa HOM05D004089 ORTHO05D004687 6.7e-19 99.0 295 30.2
CARHR275100 Cardamine hirsuta HOM05D004089 ORTHO05D004687 8.7e-19 98.6 290 32.1
Phvul.009G184900 Phaseolus vulgaris HOM05D004089 ORTHO05D004687 8.7e-19 98.6 301 30.2
VMungo1215G0778 Vigna mungo HOM05D004089 ORTHO05D004687 8.7e-19 98.6 306 32.0
C07p44990 Brassica napus HOM05D004089 ORTHO05D004687 1.1e-18 98.2 289 31.5
Cfa019278 Carpinus fangiana HOM05D004089 ORTHO05D004687 1.1e-18 98.2 326 29.1
Ciclev10020945m.g Citrus clementina HOM05D004089 ORTHO05D004687 1.1e-18 98.2 330 29.4
MBI19_g43436_MAGBIO Magnolia biondii HOM05D004089 ORTHO05D004687 1.5e-18 97.8 316 30.7
Manes.06G089200 Manihot esculenta HOM05D004089 ORTHO05D004687 1.5e-18 97.8 316 30.1
PGR044G2522 Punica granatum HOM05D004089 ORTHO05D004687 1.5e-18 97.8 294 32.0
AL8G38000 Arabidopsis lyrata HOM05D004089 ORTHO05D004687 1.9e-18 97.4 289 31.8
VMungo1309G2967 Vigna mungo HOM05D004089 ORTHO05D004687 1.9e-18 97.4 306 31.7
arahy.Tifrunner.gnm1.ann1.JX1FK0 Arachis hypogaea HOM05D004089 ORTHO05D004687 3.3e-18 96.7 298 29.9
Manes.02G049400 Manihot esculenta HOM05D004089 ORTHO05D004687 3.3e-18 96.7 273 33.7
C09p08150 Brassica napus HOM05D004089 ORTHO05D004687 4.3e-18 96.3 289 30.4
Medtr3g037110 Medicago truncatula HOM05D004089 ORTHO05D004687 5.6e-18 95.9 291 29.9
Atru.chr9.325 Acer truncatum HOM05D004089 ORTHO05D004687 7.4e-18 95.5 282 29.8
TWI60G1703 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 7.4e-18 95.5 294 33.7
Psat4g049120 Pisum sativum HOM05D004089 ORTHO05D004687 1.6e-17 94.4 298 28.2
Potri.015G060900 Populus trichocarpa HOM05D004089 ORTHO05D004687 2.1e-17 94.0 294 30.6
TAR371G1138 Trochodendron aralioides HOM05D004089 ORTHO05D004687 2.1e-17 94.0 274 32.5
Carub.0008s2201 Capsella rubella HOM05D004089 ORTHO05D004687 2.8e-17 93.6 289 30.8
Phvul.003G187900 Phaseolus vulgaris HOM05D004089 ORTHO05D004687 3.7e-17 93.2 300 30.0
Cc04_g14350 Coffea canephora HOM05D004089 ORTHO05D004687 4.8e-17 92.8 316 30.4
Medtr4g109020 Medicago truncatula HOM05D004089 ORTHO05D004687 6.2e-17 92.4 293 29.0
BcaB04g19907 Brassica carinata HOM05D004089 ORTHO05D004687 1.1e-16 91.7 289 29.8
Peaxi162Scf00274g10024 Petunia axillaris HOM05D004089 ORTHO05D004687 1.1e-16 91.7 291 29.2
Psat5g199240 Pisum sativum HOM05D004089 ORTHO05D004687 1.1e-16 91.7 290 30.0
Lj4g0011676 Lotus japonicus HOM05D004089 ORTHO05D004687 1.4e-16 91.3 300 30.0
ClCG04G012070 Citrullus lanatus HOM05D004089 ORTHO05D004687 1.8e-16 90.9 294 31.6
Rhsim08G0151200 Rhododendron simsii HOM05D004089 ORTHO05D004687 1.8e-16 90.9 291 27.8
Oeu046997.1 Olea europaea HOM05D004089 ORTHO05D004687 2.4e-16 90.5 292 29.8
Hma1.2p1_0060F.1_g033460 Hydrangea macrophylla HOM05D004089 ORTHO05D004687 3.1e-16 90.1 297 29.0
TWI81G0628 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 3.1e-16 90.1 293 32.4
BraA02t09111Z Brassica rapa HOM05D004089 ORTHO05D004687 4.0e-16 89.7 307 30.6
Lsat_1_v5_gn_1_13901 Lactuca sativa HOM05D004089 ORTHO05D004687 4.0e-16 89.7 309 28.2
Lj1g0017851 Lotus japonicus HOM05D004089 ORTHO05D004687 4.0e-16 89.7 311 28.9
Sopen03g034670 Solanum pennellii HOM05D004089 ORTHO05D004687 4.0e-16 89.7 292 31.5
PGSC0003DMG400024664 Solanum tuberosum HOM05D004089 ORTHO05D004687 4.0e-16 89.7 319 30.7
HanXRQChr16g0502591 Helianthus annuus HOM05D004089 ORTHO05D004687 5.3e-16 89.4 282 27.7
Solyc06g069680.1 Solanum lycopersicum HOM05D004089 ORTHO05D004687 5.3e-16 89.4 299 29.8
MSTRG.4442 Avicennia marina HOM05D004089 ORTHO05D004687 6.9e-16 89.0 305 29.5
Sabra15G0086100 Salix brachista HOM05D004089 ORTHO05D004687 6.9e-16 89.0 285 30.5
Thhalv10005448m.g Eutrema salsugineum HOM05D004089 ORTHO05D004687 9.0e-16 88.6 289 30.8
BcaB07g29822 Brassica carinata HOM05D004089 ORTHO05D004687 2.6e-15 87.0 279 30.8
PGR083G0705 Punica granatum HOM05D004089 ORTHO05D004687 2.6e-15 87.0 316 31.3
THA.LOC104801435 Tarenaya hassleriana HOM05D004089 ORTHO05D004687 2.6e-15 87.0 289 30.8
Sp2g24550 Schrenkiella parvula HOM05D004089 ORTHO05D004687 3.4e-15 86.7 289 30.1
MELO3C002001.2 Cucumis melo HOM05D004089 ORTHO05D004687 4.5e-15 86.3 291 31.3
HanXRQChr09g0270961 Helianthus annuus HOM05D004089 ORTHO05D004687 4.5e-15 86.3 282 26.2
CsaV3_1G005700 Cucumis sativus L. HOM05D004089 ORTHO05D004687 5.8e-15 85.9 291 30.6
Solyc03g115690.1 Solanum lycopersicum HOM05D004089 ORTHO05D004687 5.8e-15 85.9 292 30.1
Sed0006516 Sechium edule HOM05D004089 ORTHO05D004687 7.6e-15 85.5 295 28.8
TWI15G0089 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 7.6e-15 85.5 296 31.1
THA.LOC104818514 Tarenaya hassleriana HOM05D004089 ORTHO05D004687 1.3e-14 84.7 255 31.8
Eucgr.K02492 Eucalyptus grandis HOM05D004089 ORTHO05D004687 1.7e-14 84.3 241 32.8
Sed0010910 Sechium edule HOM05D004089 ORTHO05D004687 1.7e-14 84.3 326 32.2
C02p61630 Brassica napus HOM05D002313 ORTHO05D003747 2.9e-14 83.6 340 29.1
Eucgr.B00548 Eucalyptus grandis HOM05D004089 ORTHO05D004687 2.9e-14 83.6 301 30.9
Oeu047272.1 Olea europaea HOM05D004089 ORTHO05D004687 2.9e-14 83.6 295 29.2
Oeu052462.1 Olea europaea HOM05D004089 ORTHO05D004687 2.9e-14 83.6 299 30.1
unitig_26.g9653 Utricularia gibba HOM05D004089 ORTHO05D004687 2.9e-14 83.6 300 29.7
DCAR_021516 Daucus carota HOM05D004089 ORTHO05D004687 3.8e-14 83.2 293 28.7
BolC2t12218H Brassica oleracea HOM05D002313 ORTHO05D003747 4.9e-14 82.8 268 32.1
A02p41700 Brassica napus HOM05D002313 ORTHO05D004687 6.4e-14 82.4 340 29.1
Gorai.008G195500 Gossypium raimondii HOM05D004089 ORTHO05D004687 6.4e-14 82.4 299 29.1
HanXRQChr04g0107211 Helianthus annuus HOM05D004089 ORTHO05D004687 1.1e-13 81.6 287 26.5
DCAR_016583 Daucus carota HOM05D004089 ORTHO05D004687 1.4e-13 81.3 323 27.2
Sopen06g026980 Solanum pennellii HOM05D004089 ORTHO05D004687 1.4e-13 81.3 303 30.0
Sc04g0002900 Simmondsia chinensis HOM05D004089 ORTHO05D004687 1.9e-13 80.9 314 29.6
Gohir.A07G070400 Gossypium hirsutum HOM05D004089 ORTHO05D004687 2.5e-13 80.5 308 29.2
Gohir.D07G074900 Gossypium hirsutum HOM05D004089 ORTHO05D004687 2.5e-13 80.5 312 28.8
Aa31LG11G2070 Aethionema arabicum HOM05D004089 ORTHO05D004687 4.2e-13 79.7 284 29.9
BcaC04g23456 Brassica carinata HOM05D004089 ORTHO05D004687 4.2e-13 79.7 216 32.4
Gorai.001G079000 Gossypium raimondii HOM05D004089 ORTHO05D004687 5.5e-13 79.3 312 28.5
Gohir.D12G182200 Gossypium hirsutum HOM05D004089 ORTHO05D004687 9.3e-13 78.6 283 29.0
TAR369G0101 Trochodendron aralioides HOM05D004089 ORTHO05D004687 2.7e-12 77.0 132 41.7
Sed0015191 Sechium edule HOM05D004089 ORTHO05D004687 3.5e-12 76.6 292 29.5
CiPaw.11G047700 Carya illinoinensis HOM05D004089 ORTHO05D004687 4.6e-12 76.3 253 29.2
EL10Ac5g11067 Beta vulgaris HOM05D004089 ORTHO05D004687 6.0e-12 75.9 332 29.8
CSS0047924 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 7.9e-12 75.5 122 43.4
TAR626G1449 Trochodendron aralioides HOM05D004089 ORTHO05D004687 7.9e-12 75.5 134 41.0
ClCG06G015980 Citrullus lanatus HOM05D004089 ORTHO05D004687 1.0e-11 75.1 310 29.0
CANSAT80G2067 Cannabis sativa HOM05D004089 ORTHO05D004687 3.0e-11 73.6 338 26.3
MELO3C017194.2 Cucumis melo HOM05D004089 ORTHO05D004687 1.1e-10 71.6 303 28.7
Dinv38750 Davidia involucrata HOM05D004089 ORTHO05D004687 7.4e-10 68.9 239 29.3
TPR.G12274 Trifolium pratense HOM05D000041 ORTHO05D006140 9.6e-10 68.6 118 38.1
Migut.D01757 Erythranthe guttata HOM05D004089 ORTHO05D004687 1.3e-09 68.2 302 27.5
Cpa.g.sc13.300 Carica papaya HOM05D004089 ORTHO05D004687 2.1e-09 67.4 211 31.3
Ca_21804_v3 Cicer arietinum L. HOM05D004089 ORTHO05D004687 2.8e-09 67.0 325 25.5
CsaV3_1G002580 Cucumis sativus L. HOM05D004089 ORTHO05D004687 3.7e-09 66.6 302 27.5
ATR0730G119 Amborella trichopoda HOM05D004089 ORTHO05D004687 4.8e-09 66.2 323 27.2
PSO063G7677 Papaver somniferum HOM05D004089 ORTHO05D004687 1.4e-08 64.7 112 38.4
SGA_v2.0_scaffold7G04046 Striga asiatica HOM05D004089 ORTHO05D004687 1.8e-08 64.3 291 24.7
COL.COLO4_12233 Corchorus olitorius HOM05D004089 ORTHO05D004687 4.0e-08 63.2 107 40.2
Lj9A467G76 Lonicera japonica HOM05D004089 ORTHO05D004687 6.9e-08 62.4 115 36.5
Lalb_Chr13g0303071 Lupinus albus HOM05D004089 ORTHO05D004687 6.9e-08 62.4 303 26.7
Gohir.A11G032400 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.5e-07 61.2 293 27.3
Gohir.D11G035700 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.5e-07 61.2 293 28.0
Potri.012G068000 Populus trichocarpa HOM05D004089 ORTHO05D004687 1.5e-07 61.2 255 28.6
Ca_13877_v3 Cicer arietinum L. HOM05D004089 ORTHO05D004687 2.0e-07 60.8 136 33.1
Zm00001eb136250 Zea mays HOM05D004089 ORTHO05D004687 2.0e-07 60.8 309 27.5
Rhsim10G0035500 Rhododendron simsii HOM05D004089 ORTHO05D004687 2.6e-07 60.5 120 36.7
Duzib147G1274 Durio zibethinus HOM05D004089 ORTHO05D004687 3.4e-07 60.1 220 30.9
Gorai.007G038500 Gossypium raimondii HOM05D004089 ORTHO05D004687 5.8e-07 59.3 293 28.3
SalBow7G3788 Salvia bowleyana HOM05D004089 ORTHO05D004687 7.6e-07 58.9 301 26.9
Oeu006382.1 Olea europaea HOM05D000714 ORTHO05D000544 1.7e-06 57.8 138 33.3
Zm00001eb029590 Zea mays HOM05D004089 ORTHO05D004687 1.7e-06 57.8 244 32.0
Rhsim08G0150900 Rhododendron simsii HOM05D004089 ORTHO05D004687 2.2e-06 57.4 157 33.8


User provided reference genes

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