Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01977 Eucalyptus grandis HOM05D005710 ORTHO05D004657 3.2e-222 775.0 425 100.0
Atru.chr8.406 Acer truncatum HOM05D005710 ORTHO05D004657 6.6e-58 229.2 442 42.3
PGR004G2722 Punica granatum HOM05D005710 ORTHO05D004657 6.1e-56 222.6 359 46.0
Ciclev10011685m.g Citrus clementina HOM05D005710 ORTHO05D004657 8.0e-56 222.2 444 40.3
Thecc.04G091900 Theobroma cacao HOM05D005710 ORTHO05D004657 8.0e-56 222.2 454 41.9
Cfa007637 Carpinus fangiana HOM05D005710 ORTHO05D004657 4.0e-55 219.9 461 42.1
COL.COLO4_03731 Corchorus olitorius HOM05D005710 ORTHO05D004657 5.2e-55 219.5 453 41.9
Potri.017G091100 Populus trichocarpa HOM05D005710 ORTHO05D004657 1.7e-53 214.5 417 42.7
MD09G1062500 Malus domestica HOM05D005710 ORTHO05D004657 2.9e-53 213.8 440 41.4
Sabra17G0080200 Salix brachista HOM05D005710 ORTHO05D004657 2.9e-53 213.8 463 39.5
Cpa.g.sc14.156 Carica papaya HOM05D005710 ORTHO05D004657 6.4e-53 212.6 461 38.6
Duzib147G0411 Durio zibethinus HOM05D005710 ORTHO05D004657 9.2e-52 208.8 447 41.2
Duzib187G0917 Durio zibethinus HOM05D005710 ORTHO05D004657 8.6e-50 202.2 437 40.5
CANSAT64G1937 Cannabis sativa HOM05D005710 ORTHO05D004657 1.2e-48 198.4 449 37.2
Gohir.D09G010000 Gossypium hirsutum HOM05D005710 ORTHO05D004657 2.1e-48 197.6 438 40.4
Gohir.A09G010900 Gossypium hirsutum HOM05D005710 ORTHO05D004657 6.2e-48 196.1 431 40.6
RcHm_v2.0_Chr2g0166341 Rosa chinensis HOM05D005710 ORTHO05D004657 1.0e-47 195.3 443 39.1
Prupe.3G257800 Prunus persica HOM05D005710 ORTHO05D004657 3.1e-47 193.7 414 40.3
QL02p039943 Quercus lobata HOM05D005710 ORTHO05D004657 1.2e-46 191.8 359 41.8
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 1.5e-46 191.4 387 40.3
CiPaw.04G057600 Carya illinoinensis HOM05D005710 ORTHO05D004657 7.5e-46 189.1 443 37.2
FAN14G2617 Fragaria x ananassa HOM05D005710 ORTHO05D004657 2.4e-44 184.1 442 37.3
Gorai.006G011600 Gossypium raimondii HOM05D005710 ORTHO05D004657 7.0e-44 182.6 331 44.7
FvH4_6g47270 Fragaria vesca HOM05D005710 ORTHO05D004657 3.5e-43 180.3 443 36.8
vmacro18155 Vaccinium macrocarpon HOM05D005710 ORTHO05D004657 3.5e-43 180.3 420 38.6
MD00G1156300 Malus domestica HOM05D005710 ORTHO05D004657 4.6e-43 179.9 340 42.4
Manes.01G098200 Manihot esculenta HOM05D005710 ORTHO05D004657 1.5e-41 174.9 460 35.9
Sed0007565 Sechium edule HOM05D005710 ORTHO05D004657 1.9e-41 174.5 447 36.2
Rhsim08G0074100 Rhododendron simsii HOM05D005710 ORTHO05D004657 2.5e-41 174.1 425 39.3
TWI32G0095 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 9.5e-41 172.2 449 34.5
Haze_14462 Corylus avellana HOM05D005710 ORTHO05D004657 1.8e-39 167.9 457 37.0
TWI60G1009 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 1.8e-39 167.9 436 34.6
Dinv34961 Davidia involucrata HOM05D005710 ORTHO05D004657 4.0e-39 166.8 375 37.3
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 2.0e-38 164.5 438 36.5
Lj1g0027832 Lotus japonicus HOM05D005710 ORTHO05D004657 9.8e-38 162.2 449 37.0
CSS0045690 Camellia sinensis var. sinensis HOM05D005710 ORTHO05D004657 1.3e-37 161.8 433 38.1
arahy.Tifrunner.gnm1.ann1.EE1ZRN Arachis hypogaea HOM05D005710 ORTHO05D004657 1.4e-36 158.3 418 37.8
Glyma.08G242700 Glycine max HOM05D005710 ORTHO05D004657 1.4e-36 158.3 430 36.7
TWI34G1348 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 1.4e-36 158.3 378 37.0
Glyma.18G264900 Glycine max HOM05D005710 ORTHO05D004657 1.9e-36 157.9 430 35.3
Oeu025712.1 Olea europaea HOM05D005710 ORTHO05D004657 9.2e-36 155.6 440 37.3
CsaV3_5G038440 Cucumis sativus L. HOM05D005710 ORTHO05D004657 1.6e-35 154.8 434 35.3
arahy.Tifrunner.gnm1.ann1.B1JWTK Arachis hypogaea HOM05D005710 ORTHO05D004657 2.1e-35 154.5 418 37.1
Manes.02G052100 Manihot esculenta HOM05D005710 ORTHO05D004657 2.1e-35 154.5 448 34.6
Actinidia01981 Actinidia chinensis HOM05D005710 ORTHO05D004657 6.0e-35 152.9 411 35.3
Ah.10g032010 Amaranthus hybridus HOM05D005710 ORTHO05D004657 6.0e-35 152.9 451 32.2
DCAR_011051 Daucus carota HOM05D005710 ORTHO05D004657 6.0e-35 152.9 434 33.4
Hund13162 Selenicereus undatus HOM05D005710 ORTHO05D004657 6.0e-35 152.9 352 36.6
Cc07_g04040 Coffea canephora HOM05D005710 ORTHO05D004657 1.0e-34 152.1 393 36.4
TPR.G33463 Trifolium pratense HOM05D005710 ORTHO05D004657 1.7e-34 151.4 384 38.0
FAN05G5426 Fragaria x ananassa HOM05D005710 ORTHO05D004657 1.5e-33 148.3 335 38.2
FAN09G1437 Fragaria x ananassa HOM05D005710 ORTHO05D004657 1.5e-33 148.3 335 38.2
VMungo1383G0251 Vigna mungo HOM05D005710 ORTHO05D004657 1.9e-33 147.9 423 34.3
MELO3C022025.2 Cucumis melo HOM05D005710 ORTHO05D004657 8.1e-32 142.5 431 34.6
Medtr7g012940 Medicago truncatula HOM05D005710 ORTHO05D004657 8.1e-32 142.5 445 35.3
TAR629G0087 Trochodendron aralioides HOM05D005710 ORTHO05D004657 1.4e-31 141.7 395 35.7
Lsat_1_v5_gn_3_98801 Lactuca sativa HOM05D005710 ORTHO05D004657 3.1e-31 140.6 385 34.5
Lalb_Chr17g0337061 Lupinus albus HOM05D005710 ORTHO05D004657 3.1e-31 140.6 408 35.8
Phvul.008G035100 Phaseolus vulgaris HOM05D005710 ORTHO05D004657 1.5e-30 138.3 427 35.1
Actinidia07818 Actinidia chinensis HOM05D005710 ORTHO05D004657 2.6e-30 137.5 296 38.9
CAN.G206.210 Capsicum annuum HOM05D005710 ORTHO05D004657 2.6e-30 137.5 377 35.0
AUR62042434 Chenopodium quinoa HOM05D005710 ORTHO05D004657 1.3e-29 135.2 362 32.9
Psat3g200880 Pisum sativum HOM05D005710 ORTHO05D004657 6.4e-29 132.9 403 33.7
Hund15554 Selenicereus undatus HOM05D005710 ORTHO05D004657 6.4e-29 132.9 442 31.4
AUR62018163 Chenopodium quinoa HOM05D005710 ORTHO05D004657 8.4e-29 132.5 377 33.2
SGA_v2.0_scaffold4G02406 Striga asiatica HOM05D005710 ORTHO05D004657 1.1e-28 132.1 405 33.1
EL10Ac2g03101 Beta vulgaris HOM05D005710 ORTHO05D004657 1.4e-28 131.7 343 33.8
THA.LOC104823892 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 2.4e-28 131.0 466 31.8
HanXRQChr15g0473071 Helianthus annuus HOM05D005710 ORTHO05D004657 2.1e-27 127.9 293 37.2
Thhalv10027716m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 6.0e-27 126.3 295 38.6
PSO017G2516 Papaver somniferum HOM05D005710 ORTHO05D004657 6.0e-27 126.3 389 35.0
Sp2g17910 Schrenkiella parvula HOM05D005710 ORTHO05D004657 6.0e-27 126.3 287 38.0
THA.LOC104805502 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 3.0e-26 124.0 298 36.2
CARHR154030 Cardamine hirsuta HOM05D005710 ORTHO05D004657 6.6e-26 122.9 277 39.0
PSO478G1813 Papaver somniferum HOM05D005710 ORTHO05D004657 6.6e-26 122.9 399 32.8
Nitab4.5_0008213g0040 Nicotiana tabacum HOM05D005710 ORTHO05D004657 1.1e-25 122.1 430 33.7
Haze_14452 Corylus avellana HOM05D005710 ORTHO05D004657 1.9e-25 121.3 417 33.1
Thhalv10003979m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 1.9e-25 121.3 438 31.1
SalBow7G3425 Salvia bowleyana HOM05D005710 ORTHO05D004657 1.9e-25 121.3 361 33.5
BcaB07g30084 Brassica carinata HOM05D005710 ORTHO05D004657 5.6e-25 119.8 457 31.9
Migut.K01286 Erythranthe guttata HOM05D005710 ORTHO05D004657 7.3e-25 119.4 384 35.2
ClCG11G004670 Citrullus lanatus HOM05D005710 ORTHO05D004657 1.2e-24 118.6 392 31.4
A06p39970 Brassica napus HOM05D005710 ORTHO05D004657 1.6e-24 118.2 386 31.3
BraA06t26912Z Brassica rapa HOM05D005710 ORTHO05D004657 1.6e-24 118.2 386 31.3
SGA_v2.0_scaffold52G19180 Striga asiatica HOM05D005710 ORTHO05D004657 1.6e-24 118.2 308 35.7
Aa31LG9G16660 Aethionema arabicum HOM05D005710 ORTHO05D004657 8.1e-24 115.9 280 35.4
MBI16_g30408_MAGBIO Magnolia biondii HOM05D001913 ORTHO05D001880 1.4e-23 115.2 294 37.1
C02p55500 Brassica napus HOM05D005710 ORTHO05D004657 3.1e-23 114.0 390 34.1
BolC2t11608H Brassica oleracea HOM05D005710 ORTHO05D004657 3.1e-23 114.0 390 34.1
BcaC03g17571 Brassica carinata HOM05D005710 ORTHO05D004657 9.0e-23 112.5 371 33.7
Nitab4.5_0000565g0150 Nicotiana tabacum HOM05D005710 ORTHO05D004657 9.0e-23 112.5 407 32.7
A02p36530 Brassica napus HOM05D005710 ORTHO05D004657 1.5e-22 111.7 384 33.9
BraA02t08649Z Brassica rapa HOM05D005710 ORTHO05D004657 1.5e-22 111.7 384 33.9
ECA246G0940 Erigeron canadensis HOM05D005710 ORTHO05D004657 2.6e-22 110.9 369 31.2
BcaC08g44413 Brassica carinata HOM05D005710 ORTHO05D004657 3.4e-22 110.5 377 30.5
C06p18500 Brassica napus HOM05D005710 ORTHO05D004657 3.4e-22 110.5 377 30.5
Hma1.2p1_1813F.1_g303710 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 7.6e-22 109.4 304 35.2
AT3G29310 Arabidopsis thaliana HOM05D005710 ORTHO05D004657 2.2e-21 107.8 351 32.2
Aqoxy3G03578 Aquilegia oxysepala HOM05D005710 ORTHO05D004657 4.9e-21 106.7 177 39.5
Solyc02g088660.4 Solanum lycopersicum HOM05D005710 ORTHO05D004657 4.9e-21 106.7 238 38.2
AL5G19350 Arabidopsis lyrata HOM05D005710 ORTHO05D004657 1.1e-20 105.5 290 34.8
Carub.0005s0802 Capsella rubella HOM05D005710 ORTHO05D004657 9.3e-20 102.4 298 35.2
Aa31LG2G3970 Aethionema arabicum HOM05D005710 ORTHO05D004657 1.2e-19 102.1 345 33.0
BolC6t37063H Brassica oleracea HOM05D005710 ORTHO05D004657 7.8e-19 99.4 372 31.5
C07p38200 Brassica napus HOM05D005710 ORTHO05D004657 3.3e-17 94.0 231 38.5
BcaB02g07987 Brassica carinata HOM05D005710 ORTHO05D004657 4.3e-17 93.6 451 30.6
Peaxi162Scf00166g00643 Petunia axillaris HOM05D005710 ORTHO05D004657 1.2e-14 85.5 388 30.9
Os05g0512400 Oryza sativa ssp. japonica HOM05D005710 ORTHO05D004657 1.5e-14 85.1 121 43.0
Zm00001eb352990 Zea mays HOM05D005710 ORTHO05D004657 9.9e-14 82.4 102 44.1
CDE07G0246 Ceratophyllum demersum HOM05D001913 ORTHO05D001880 2.4e-12 77.8 299 30.8
HPP92_019480 Vanilla planifolia HOM05D005710 ORTHO05D004657 7.1e-12 76.3 217 30.4
Ca_06819_v3 Cicer arietinum L. HOM05D005710 ORTHO05D004657 1.6e-11 75.1 269 34.6
Migut.K01288 Erythranthe guttata HOM05D005710 ORTHO05D004657 1.5e-09 68.6 265 33.2
Nn4g23370 Nelumbo nucifera HOM05D005710 ORTHO05D004657 1.9e-09 68.2 278 27.3
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 5.6e-09 66.6 217 28.1
Potri.002G166300 Populus trichocarpa HOM05D006269 ORTHO05D001487 9.6e-09 65.9 117 34.2
RcHm_v2.0_Chr1g0358421 Rosa chinensis HOM05D006269 ORTHO05D001487 8.1e-08 62.8 119 31.9
SalBow2G0426 Salvia bowleyana HOM05D005710 ORTHO05D004657 1.1e-07 62.4 137 33.6
Actinidia13575 Actinidia chinensis HOM05D005186 ORTHO05D006278 1.8e-07 61.6 114 34.2
FAN10G2074 Fragaria x ananassa HOM05D006269 ORTHO05D001487 2.4e-07 61.2 127 31.5
FAN10G3724 Fragaria x ananassa HOM05D006269 ORTHO05D001487 2.4e-07 61.2 127 31.5
GSVIVG01027028001 Vitis vinifera HOM05D006269 ORTHO05D001487 2.4e-07 61.2 137 31.4
BcaC06g33686 Brassica carinata HOM05D005710 ORTHO05D004657 3.1e-07 60.8 193 31.6
HPP92_008793 Vanilla planifolia HOM05D006269 ORTHO05D001487 3.1e-07 60.8 108 35.2
vmacro13212 Vaccinium macrocarpon HOM05D006269 ORTHO05D001487 4.0e-07 60.5 143 30.1
Sabra02G0145300 Salix brachista HOM05D006269 ORTHO05D001487 5.3e-07 60.1 117 29.9
arahy.Tifrunner.gnm1.ann1.YSVF0U Arachis hypogaea HOM05D006269 ORTHO05D001487 9.0e-07 59.3 176 30.7
QL09p019611 Quercus lobata HOM05D005186 ORTHO05D006278 1.2e-06 58.9 112 35.7
arahy.Tifrunner.gnm1.ann1.II6FYR Arachis hypogaea HOM05D006269 ORTHO05D001487 1.5e-06 58.5 161 30.4
FvH4_7g15690 Fragaria vesca HOM05D006269 ORTHO05D001487 2.0e-06 58.2 119 30.3
FAN06G3724 Fragaria x ananassa HOM05D006269 ORTHO05D001487 2.0e-06 58.2 119 30.3
arahy.Tifrunner.gnm1.ann1.7NC073 Arachis hypogaea HOM05D005186 ORTHO05D006278 2.6e-06 57.8 111 37.8
arahy.Tifrunner.gnm1.ann1.UNN1LQ Arachis hypogaea HOM05D005186 ORTHO05D006278 2.6e-06 57.8 111 37.8
DCAR_008644 Daucus carota HOM05D001461 ORTHO05D001487 2.6e-06 57.8 137 32.1
FAN03G1935 Fragaria x ananassa HOM05D006269 ORTHO05D001487 2.6e-06 57.8 144 29.2
Psat7g207000 Pisum sativum HOM05D005186 ORTHO05D006278 2.6e-06 57.8 111 34.2
Dinv28566 Davidia involucrata HOM05D005186 ORTHO05D006278 3.4e-06 57.4 112 33.0
FAN01G3063 Fragaria x ananassa HOM05D005186 ORTHO05D006278 3.4e-06 57.4 158 31.0
FAN10G1701 Fragaria x ananassa HOM05D005186 ORTHO05D006278 3.4e-06 57.4 158 31.0
Medtr4g036110 Medicago truncatula HOM05D005186 ORTHO05D006278 3.4e-06 57.4 125 32.8
Rhsim10G0141000 Rhododendron simsii HOM05D006269 ORTHO05D001487 3.4e-06 57.4 125 28.8
CANSAT56G0891 Cannabis sativa HOM05D006269 ORTHO05D001487 4.5e-06 57.0 112 31.2
COL.COLO4_06360 Corchorus olitorius HOM05D006269 ORTHO05D001487 4.5e-06 57.0 153 28.1
FAN06G2203 Fragaria x ananassa HOM05D006269 ORTHO05D001487 4.5e-06 57.0 119 30.3
ATR1153G063 Amborella trichopoda HOM05D005186 ORTHO05D006278 5.8e-06 56.6 99 35.4
Haze_15599 Corylus avellana HOM05D006269 ORTHO05D001487 5.8e-06 56.6 109 30.3
Glyma.09G231200 Glycine max HOM05D005186 ORTHO05D006278 5.8e-06 56.6 111 34.2
Lj4P116T76 Lonicera japonica HOM05D005710 ORTHO05D004657 5.8e-06 56.6 144 36.1
Lj3g0017931 Lotus japonicus HOM05D005186 ORTHO05D006278 5.8e-06 56.6 111 34.2
VMungo1127G0816 Vigna mungo HOM05D005186 ORTHO05D006278 5.8e-06 56.6 111 35.1
Ca_25005_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 7.6e-06 56.2 125 32.0
Cc02_g38780 Coffea canephora HOM05D006269 ORTHO05D001487 7.6e-06 56.2 154 27.9
Phvul.011G006100 Phaseolus vulgaris HOM05D005186 ORTHO05D006278 7.6e-06 56.2 111 36.0
BolC3t18705H Brassica oleracea HOM05D005186 ORTHO05D006278 9.9e-06 55.8 99 35.4
FvH4_7g27600 Fragaria vesca HOM05D005186 ORTHO05D006278 9.9e-06 55.8 158 30.4
FAN03G1399 Fragaria x ananassa HOM05D005186 ORTHO05D006278 9.9e-06 55.8 158 30.4
FAN06G2498 Fragaria x ananassa HOM05D005186 ORTHO05D006278 9.9e-06 55.8 158 30.4
FAN06G5126 Fragaria x ananassa HOM05D005186 ORTHO05D006278 9.9e-06 55.8 158 30.4
Nitab4.5_0003875g0030 Nicotiana tabacum HOM05D005186 ORTHO05D006278 9.9e-06 55.8 111 36.0
Psat4g157480 Pisum sativum HOM05D006269 ORTHO05D001487 9.9e-06 55.8 116 32.8
TPR.G3671 Trifolium pratense HOM05D005186 ORTHO05D006278 9.9e-06 55.8 125 32.0


User provided reference genes

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