Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01975 Eucalyptus grandis HOM05D005220 ORTHO05D006082 4.8e-157 557.8 278 100.0
TWI34G1812 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 4.5e-46 189.1 231 51.5
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 2.9e-45 186.4 193 53.4
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 1.9e-44 183.7 177 57.1
GSVIVG01011505001 Vitis vinifera HOM05D005220 ORTHO05D006082 1.9e-44 183.7 192 53.1
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 9.4e-44 181.4 181 54.1
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 3.0e-42 176.4 258 42.6
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.5e-41 174.1 307 38.8
Manes.01G098100 Manihot esculenta HOM05D005220 ORTHO05D006082 2.6e-41 173.3 280 45.0
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 9.7e-41 171.4 223 48.4
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 9.7e-41 171.4 314 40.1
Cfa007639 Carpinus fangiana HOM05D005220 ORTHO05D006082 3.7e-40 169.5 223 45.3
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 4.8e-40 169.1 228 45.2
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 2.4e-39 166.8 247 42.9
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 3.1e-39 166.4 258 40.7
Lj1g0008070 Lotus japonicus HOM05D005220 ORTHO05D006082 4.1e-39 166.0 209 44.5
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 5.3e-39 165.6 221 47.5
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 1.6e-38 164.1 186 47.3
TWI60G0661 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 4.5e-38 162.5 188 50.5
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 1.7e-37 160.6 197 49.7
TAR374G0076 Trochodendron aralioides HOM05D005220 ORTHO05D006082 5.5e-36 155.6 173 50.9
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 1.6e-35 154.1 191 46.6
Haze_14458 Corylus avellana HOM05D005220 ORTHO05D006082 2.7e-35 153.3 256 40.2
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 1.0e-34 151.4 162 51.2
Hund13159 Selenicereus undatus HOM05D005220 ORTHO05D006082 3.0e-34 149.8 272 38.2
vmacro18154 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 4.0e-34 149.4 269 40.1
Phvul.008G035000 Phaseolus vulgaris HOM05D005220 ORTHO05D006082 6.8e-34 148.7 267 39.3
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 1.2e-33 147.9 293 37.5
Lsat_1_v5_gn_2_87740 Lactuca sativa HOM05D005220 ORTHO05D006082 1.2e-33 147.9 284 37.7
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 2.0e-33 147.1 236 43.6
Glyma.18G265000 Glycine max HOM05D005220 ORTHO05D006082 2.6e-33 146.7 272 37.1
Rhsim08G0074200 Rhododendron simsii HOM05D005220 ORTHO05D006082 2.6e-33 146.7 272 38.2
HanXRQChr14g0448751 Helianthus annuus HOM05D005220 ORTHO05D006082 9.8e-33 144.8 288 38.9
TAR371G0084 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.3e-32 144.4 195 43.6
MBI16_g09907_MAGBIO Magnolia biondii HOM05D005220 ORTHO05D006082 3.7e-32 142.9 201 44.8
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 8.3e-32 141.7 137 55.5
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 1.8e-31 140.6 300 37.0
Lalb_Chr17g0337031 Lupinus albus HOM05D005220 ORTHO05D006082 1.8e-31 140.6 259 37.5
SalBow1G1470 Salvia bowleyana HOM05D005220 ORTHO05D006082 5.4e-31 139.0 238 40.8
Sc10g0003210 Simmondsia chinensis HOM05D005220 ORTHO05D006082 1.6e-30 137.5 193 43.5
Duzib205G0201 Durio zibethinus HOM05D005220 ORTHO05D006082 4.5e-30 136.0 170 47.6
Rhsim10G0044300 Rhododendron simsii HOM05D005220 ORTHO05D006082 4.5e-30 136.0 139 56.1
vmacro05657 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 5.9e-30 135.6 138 58.0
Ciclev10020317m.g Citrus clementina HOM05D005220 ORTHO05D006082 1.0e-29 134.8 163 50.9
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 1.7e-29 134.0 142 49.3
Gorai.008G196900 Gossypium raimondii HOM05D005220 ORTHO05D006082 2.3e-29 133.7 173 49.1
CiPaw.11G050100 Carya illinoinensis HOM05D005220 ORTHO05D006082 2.9e-29 133.3 148 52.0
Gohir.D12G183566 Gossypium hirsutum HOM05D005220 ORTHO05D006082 3.8e-29 132.9 173 49.1
QL10p018718 Quercus lobata HOM05D005220 ORTHO05D006082 6.6e-29 132.1 158 51.9
Ca_13809_v3 Cicer arietinum L. HOM05D005220 ORTHO05D006082 1.5e-28 131.0 149 51.7
Gohir.D07G074000 Gossypium hirsutum HOM05D005220 ORTHO05D006082 2.5e-28 130.2 170 47.6
Gorai.001G078200 Gossypium raimondii HOM05D005220 ORTHO05D006082 2.5e-28 130.2 170 47.6
MD14G1208900 Malus domestica HOM05D005220 ORTHO05D006082 2.5e-28 130.2 145 49.0
Prupe.5G201200 Prunus persica HOM05D005220 ORTHO05D006082 2.5e-28 130.2 168 46.4
DCAR_011050 Daucus carota HOM05D005220 ORTHO05D006082 3.3e-28 129.8 153 50.3
MSTRG.23894 Avicennia marina HOM05D005220 ORTHO05D006082 4.2e-28 129.4 221 39.4
ECA238G3864 Erigeron canadensis HOM05D005220 ORTHO05D006082 4.2e-28 129.4 227 39.6
Nitab4.5_0000212g0170 Nicotiana tabacum HOM05D005220 ORTHO05D006082 4.2e-28 129.4 227 41.4
Nitab4.5_0007954g0010 Nicotiana tabacum HOM05D005220 ORTHO05D006082 5.5e-28 129.0 181 44.2
Thecc.03G097300 Theobroma cacao HOM05D005220 ORTHO05D006082 1.6e-27 127.5 168 47.0
CsaV3_1G002740 Cucumis sativus L. HOM05D005220 ORTHO05D006082 2.1e-27 127.1 140 50.7
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 4.7e-27 125.9 188 44.1
Cpa.g.sc94.10 Carica papaya HOM05D005220 ORTHO05D006082 1.4e-26 124.4 153 46.4
arahy.Tifrunner.gnm1.ann1.8S7SHD Arachis hypogaea HOM05D005220 ORTHO05D006082 1.8e-26 124.0 197 42.6
arahy.Tifrunner.gnm1.ann1.XVT01H Arachis hypogaea HOM05D005220 ORTHO05D006082 1.8e-26 124.0 203 41.9
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 3.0e-26 123.2 189 41.8
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 3.0e-26 123.2 140 48.6
ATR0064G106 Amborella trichopoda HOM05D005220 ORTHO05D006082 4.0e-26 122.9 284 34.9
GSVIVG01007924001 Vitis vinifera HOM05D005220 ORTHO05D006082 5.2e-26 122.5 157 45.9
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 6.8e-26 122.1 136 50.7
ClCG06G015820 Citrullus lanatus HOM05D005220 ORTHO05D006082 1.2e-25 121.3 170 43.5
Lalb_Chr23g0273001 Lupinus albus HOM05D005220 ORTHO05D006082 1.2e-25 121.3 147 49.0
Haze_07684 Corylus avellana HOM05D005220 ORTHO05D006082 1.5e-25 120.9 145 49.0
Sed0005854 Sechium edule HOM05D005220 ORTHO05D006082 3.4e-25 119.8 142 46.5
PGSC0003DMG400025138 Solanum tuberosum HOM05D005220 ORTHO05D006082 3.4e-25 119.8 174 40.8
CAN.G979.12 Capsicum annuum HOM05D005220 ORTHO05D006082 4.4e-25 119.4 184 41.3
Peaxi162Scf00629g00420 Petunia axillaris HOM05D005220 ORTHO05D006082 7.5e-25 118.6 179 40.8
Psat7g133400 Pisum sativum HOM05D005220 ORTHO05D006082 9.8e-25 118.2 137 49.6
RcHm_v2.0_Chr7g0182621 Rosa chinensis HOM05D005220 ORTHO05D006082 2.2e-24 117.1 158 44.3
FvH4_5g14276 Fragaria vesca HOM05D005220 ORTHO05D006082 3.7e-24 116.3 160 46.2
COL.COLO4_22223 Corchorus olitorius HOM05D005220 ORTHO05D006082 6.3e-24 115.5 167 44.9
Prupe.6G075200 Prunus persica HOM05D005220 ORTHO05D006082 6.3e-24 115.5 208 37.5
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 1.1e-23 114.8 159 45.9
Medtr3g023750 Medicago truncatula HOM05D005220 ORTHO05D006082 1.1e-23 114.8 174 43.1
Sed0003803 Sechium edule HOM05D005220 ORTHO05D006082 1.4e-23 114.4 169 42.0
Lj1g0011465 Lotus japonicus HOM05D005220 ORTHO05D006082 3.2e-23 113.2 196 37.8
PSO017G3052 Papaver somniferum HOM05D005220 ORTHO05D006082 3.2e-23 113.2 162 42.6
PSO302G0007 Papaver somniferum HOM05D005220 ORTHO05D006082 3.2e-23 113.2 186 40.3
Sc04g0003090 Simmondsia chinensis HOM05D005220 ORTHO05D006082 3.2e-23 113.2 194 39.2
Solyc02g067070.4 Solanum lycopersicum HOM05D005220 ORTHO05D006082 7.0e-23 112.1 180 39.4
PSO478G1432 Papaver somniferum HOM05D005220 ORTHO05D006082 9.2e-23 111.7 183 39.9
RcHm_v2.0_Chr5g0065291 Rosa chinensis HOM05D005220 ORTHO05D006082 9.2e-23 111.7 187 39.0
TPR.G12226 Trifolium pratense HOM05D005220 ORTHO05D006082 1.6e-22 110.9 144 48.6
arahy.Tifrunner.gnm1.ann1.Y71GGS Arachis hypogaea HOM05D005220 ORTHO05D006082 2.0e-22 110.5 152 44.7
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 2.0e-22 110.5 158 44.9
arahy.Tifrunner.gnm1.ann1.UWUI2N Arachis hypogaea HOM05D005220 ORTHO05D006082 2.7e-22 110.2 152 44.7
ATR0681G067 Amborella trichopoda HOM05D005220 ORTHO05D006082 3.5e-22 109.8 193 36.3
Lj1g0005307 Lotus japonicus HOM05D005220 ORTHO05D006082 3.5e-22 109.8 169 42.6
MD00G1013500 Malus domestica HOM05D005220 ORTHO05D006082 4.5e-22 109.4 178 34.8
Sopen02g016260 Solanum pennellii HOM05D005220 ORTHO05D006082 5.9e-22 109.0 180 38.9
AL5G19390 Arabidopsis lyrata HOM05D005220 ORTHO05D006082 7.8e-22 108.6 283 33.6
EL10Ac5g11101 Beta vulgaris HOM05D005220 ORTHO05D006082 1.3e-21 107.8 179 38.5
FvH4_3g36400 Fragaria vesca HOM05D005220 ORTHO05D006082 1.3e-21 107.8 185 38.4
FAN11G0817 Fragaria x ananassa HOM05D005220 ORTHO05D006082 1.3e-21 107.8 185 38.4
FAN21G2192 Fragaria x ananassa HOM05D005220 ORTHO05D006082 2.9e-21 106.7 185 38.4
FAN08G2293 Fragaria x ananassa HOM05D005220 ORTHO05D006082 3.9e-21 106.3 156 42.9
FAN25G3767 Fragaria x ananassa HOM05D005220 ORTHO05D006082 5.0e-21 105.9 185 37.8
Hund02603 Selenicereus undatus HOM05D005220 ORTHO05D006082 5.0e-21 105.9 163 40.5
CAN.G979.11 Capsicum annuum HOM05D005220 ORTHO05D006082 2.5e-20 103.6 185 40.0
HPP92_009883 Vanilla planifolia HOM05D005220 ORTHO05D006082 4.3e-20 102.8 135 43.7
Os10g0324600 Oryza sativa ssp. japonica HOM05D005220 ORTHO05D006082 1.2e-19 101.3 336 31.0
AUR62008499 Chenopodium quinoa HOM05D005220 ORTHO05D006082 2.1e-19 100.5 145 44.1
AUR62021593 Chenopodium quinoa HOM05D005220 ORTHO05D006082 2.1e-19 100.5 159 42.1
Thhalv10005570m.g Eutrema salsugineum HOM05D005220 ORTHO05D006082 2.1e-19 100.5 137 45.3
Ah.11g047990 Amaranthus hybridus HOM05D005220 ORTHO05D006082 3.6e-19 99.8 158 42.4
HPP92_020440 Vanilla planifolia HOM05D005220 ORTHO05D006082 6.1e-19 99.0 153 39.9
FAN16G3714 Fragaria x ananassa HOM05D005220 ORTHO05D006082 8.0e-19 98.6 185 37.3
Lsat_1_v5_gn_5_21940 Lactuca sativa HOM05D005220 ORTHO05D006082 5.2e-18 95.9 134 43.3
HanXRQChr14g0426851 Helianthus annuus HOM05D005220 ORTHO05D006082 8.9e-18 95.1 166 41.0
SGA_v2.0_scaffold52G19178 Striga asiatica HOM05D005220 ORTHO05D006082 1.5e-17 94.4 183 35.0
Hund02604 Selenicereus undatus HOM05D005220 ORTHO05D006082 5.8e-17 92.4 154 42.2
Aa31LG2G3950 Aethionema arabicum HOM05D005220 ORTHO05D006082 1.7e-16 90.9 199 32.7
HanXRQChr05g0157201 Helianthus annuus HOM05D005220 ORTHO05D006082 1.7e-16 90.9 128 40.6
ECA246G3789 Erigeron canadensis HOM05D005220 ORTHO05D006082 4.9e-16 89.4 136 40.4
Migut.H00644 Erythranthe guttata HOM05D005220 ORTHO05D006082 9.2e-15 85.1 66 63.6
Medtr5g097950 Medicago truncatula HOM05D005220 ORTHO05D006082 2.0e-14 84.0 136 36.8
Dinv38787 Davidia involucrata HOM05D005220 ORTHO05D006082 1.0e-13 81.6 80 60.0
Lsat_1_v5_gn_5_21960 Lactuca sativa HOM05D005220 ORTHO05D006082 3.0e-13 80.1 138 34.8
THA.LOC104801327 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 8.6e-13 78.6 136 34.6
Gohir.A12G180900 Gossypium hirsutum HOM05D005220 ORTHO05D006082 9.5e-12 75.1 150 30.0
Actinidia20636 Actinidia chinensis HOM05D001670 ORTHO05D006082 1.2e-11 74.7 57 56.1
Prupe.2G102500 Prunus persica HOM05D005220 ORTHO05D006082 2.1e-11 73.9 137 40.1
MD03G1090800 Malus domestica HOM05D005220 ORTHO05D006082 8.9e-10 68.6 71 47.9
Carub.0008s2185 Capsella rubella HOM05D001456 ORTHO05D002799 1.5e-09 67.8 158 31.6
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 2.0e-09 67.4 208 26.4
C07p44850 Brassica napus HOM05D001456 ORTHO05D002799 5.8e-09 65.9 169 29.0
Lsat_1_v5_gn_4_109841 Lactuca sativa HOM05D005220 ORTHO05D006082 3.7e-08 63.2 134 33.6
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 3.7e-08 63.2 167 27.5
CARHR274930 Cardamine hirsuta HOM05D001456 ORTHO05D002799 4.9e-08 62.8 132 32.6
BcaC06g33212 Brassica carinata HOM05D001456 ORTHO05D027445 6.4e-08 62.4 135 32.6
BcaC06g33175 Brassica carinata HOM05D001456 ORTHO05D002799 8.3e-08 62.0 139 33.1
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 1.1e-07 61.6 167 29.3
ATR0580G137 Amborella trichopoda HOM05D003426 ORTHO05D003816 1.4e-07 61.2 154 32.5
COL.COLO4_37173 Corchorus olitorius HOM05D006954 ORTHO05D008729 1.9e-07 60.8 203 26.1
A03p46800 Brassica napus HOM05D001456 ORTHO05D002799 4.1e-07 59.7 135 33.3
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 4.1e-07 59.7 179 26.8
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 5.4e-07 59.3 158 29.7
Aa31LG11G2160 Aethionema arabicum HOM05D001456 ORTHO05D002799 9.2e-07 58.5 127 31.5
THA.LOC104818337 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 9.2e-07 58.5 59 47.5
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 1.2e-06 58.2 134 31.3
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 1.2e-06 58.2 138 31.9
ECA232G0957 Erigeron canadensis HOM05D005220 ORTHO05D006082 2.1e-06 57.4 135 31.9
BolC7t45008H Brassica oleracea HOM05D001456 ORTHO05D002799 2.7e-06 57.0 167 27.5
Haze_02712 Corylus avellana HOM05D006954 ORTHO05D008729 2.7e-06 57.0 186 28.5
MBI15_g18232_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 2.7e-06 57.0 141 29.1
PGR042G3906 Punica granatum HOM05D006954 ORTHO05D008729 2.7e-06 57.0 138 30.4
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 3.5e-06 56.6 149 24.8
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 4.6e-06 56.2 149 31.5
arahy.Tifrunner.gnm1.ann1.LN378K Arachis hypogaea HOM05D006954 ORTHO05D008729 7.8e-06 55.5 178 26.4


User provided reference genes

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