Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01847 Eucalyptus grandis HOM05D000938 ORTHO05D003373 2.1e-49 198.7 100 100.0
Eucgr.I01866 Eucalyptus grandis HOM05D000938 ORTHO05D003373 2.5e-39 165.2 94 91.5
Eucgr.I01840 Eucalyptus grandis HOM05D000938 ORTHO05D003373 7.3e-39 163.7 93 84.9
Eucgr.I01837 Eucalyptus grandis HOM05D000938 ORTHO05D003373 2.1e-38 162.2 93 86.0
Eucgr.I01868 Eucalyptus grandis HOM05D000938 ORTHO05D003373 8.4e-27 123.6 90 70.0
Eucgr.I01845 Eucalyptus grandis HOM05D000938 ORTHO05D003373 1.1e-26 123.2 90 71.1
Eucgr.I01843 Eucalyptus grandis HOM05D000938 ORTHO05D003373 3.2e-26 121.7 62 93.5
Eucgr.I01864 Eucalyptus grandis HOM05D000938 ORTHO05D003373 8.1e-22 107.1 90 64.4
Eucgr.I01838 Eucalyptus grandis HOM05D000938 ORTHO05D003373 7.6e-20 100.5 88 60.2
PGR142G0819 Punica granatum HOM05D000938 ORTHO05D003373 5.8e-12 74.3 88 46.6
Sed0024325 Sechium edule HOM05D000938 ORTHO05D003373 2.9e-11 72.0 91 39.6
TPR.G35838 Trifolium pratense HOM05D000938 ORTHO05D003373 2.9e-11 72.0 93 45.2
PGR142G3586 Punica granatum HOM05D000938 ORTHO05D003373 4.9e-11 71.2 88 45.5
TPR.G35844 Trifolium pratense HOM05D000938 ORTHO05D003373 6.5e-11 70.9 94 43.6
PGR142G3985 Punica granatum HOM05D000938 ORTHO05D003373 8.4e-11 70.5 88 44.3
Ca_15057_v3 Cicer arietinum L. HOM05D000938 ORTHO05D003373 1.1e-10 70.1 93 44.1
QL02p078133 Quercus lobata HOM05D000938 ORTHO05D003373 3.2e-10 68.6 90 43.3
QL93p0205_0187 Quercus lobata HOM05D000938 ORTHO05D003373 3.2e-10 68.6 90 43.3
Duzib264G0890 Durio zibethinus HOM05D000938 ORTHO05D003373 4.2e-10 68.2 96 40.6
Glyma.13G069800 Glycine max HOM05D000938 ORTHO05D003373 7.1e-10 67.4 97 44.3
Phvul.004G020000 Phaseolus vulgaris HOM05D000938 ORTHO05D003373 7.1e-10 67.4 80 45.0
VMungo0464G1558 Vigna mungo HOM05D000938 ORTHO05D003373 9.3e-10 67.0 78 47.4
Lj2g0024933 Lotus japonicus HOM05D000938 ORTHO05D003373 2.7e-09 65.5 89 40.4
CiPaw.03G034900 Carya illinoinensis HOM05D000938 ORTHO05D003373 3.5e-09 65.1 85 48.2
Lj2g0012835 Lotus japonicus HOM05D000938 ORTHO05D003373 3.5e-09 65.1 90 43.3
QL93p0205_0194 Quercus lobata HOM05D000938 ORTHO05D003373 6.0e-09 64.3 94 41.5
CiPaw.03G034800 Carya illinoinensis HOM05D000938 ORTHO05D003373 7.9e-09 63.9 82 48.8
Manes.17G118200 Manihot esculenta HOM05D000938 ORTHO05D003373 7.9e-09 63.9 94 38.3
QL02p078026 Quercus lobata HOM05D000938 ORTHO05D003373 7.9e-09 63.9 89 41.6
Medtr6g007985 Medicago truncatula HOM05D000938 ORTHO05D003373 1.3e-08 63.2 90 40.0
Medtr6g008015 Medicago truncatula HOM05D000938 ORTHO05D003373 1.3e-08 63.2 90 40.0
TPR.G31470 Trifolium pratense HOM05D000938 ORTHO05D003373 1.3e-08 63.2 90 45.6
Dinv35026 Davidia involucrata HOM05D000938 ORTHO05D003373 1.8e-08 62.8 84 38.1
QL03p072630 Quercus lobata HOM05D000938 ORTHO05D003373 1.8e-08 62.8 99 36.4
Thecc.04G003800 Theobroma cacao HOM05D000938 ORTHO05D003373 1.8e-08 62.8 96 38.5
FvH4_6g50162 Fragaria vesca HOM05D000938 ORTHO05D003373 2.3e-08 62.4 88 40.9
Glyma.19G013200 Glycine max HOM05D000938 ORTHO05D003373 2.3e-08 62.4 85 41.2
QL93p0205_0202 Quercus lobata HOM05D000938 ORTHO05D003373 2.3e-08 62.4 85 44.7
GSVIVG01035085001 Vitis vinifera HOM05D000938 ORTHO05D003373 3.0e-08 62.0 89 44.9
QL04p034944 Quercus lobata HOM05D000938 ORTHO05D003373 3.9e-08 61.6 99 37.4
arahy.Tifrunner.gnm1.ann1.4FF1BV Arachis hypogaea HOM05D000938 ORTHO05D003373 5.1e-08 61.2 97 42.3
arahy.Tifrunner.gnm1.ann1.7BF3PT Arachis hypogaea HOM05D000938 ORTHO05D003373 5.1e-08 61.2 97 42.3
PGSC0003DMG400006945 Solanum tuberosum HOM05D000938 ORTHO05D003373 5.1e-08 61.2 83 42.2
FAN05G2940 Fragaria x ananassa HOM05D005389 ORTHO05D008484 6.7e-08 60.8 91 39.6
Psat1g079960 Pisum sativum HOM05D000938 ORTHO05D003373 6.7e-08 60.8 83 45.8
VMungo0464G1973 Vigna mungo HOM05D000938 ORTHO05D003373 6.7e-08 60.8 78 46.2
QL02p077924 Quercus lobata HOM05D000938 ORTHO05D003373 1.1e-07 60.1 95 42.1
GSVIVG01035083001 Vitis vinifera HOM05D000938 ORTHO05D003373 1.1e-07 60.1 89 46.1
Lju41A31T31 Lonicera japonica HOM05D000938 ORTHO05D003373 1.5e-07 59.7 84 38.1
QL05p000021 Quercus lobata HOM05D000938 ORTHO05D003373 1.9e-07 59.3 84 39.3
RcHm_v2.0_Chr7g0219521 Rosa chinensis HOM05D000938 ORTHO05D003373 1.9e-07 59.3 81 44.4
vmacro05793 Vaccinium macrocarpon HOM05D000938 ORTHO05D003373 1.9e-07 59.3 68 45.6
Psat1g079240 Pisum sativum HOM05D000938 ORTHO05D003373 2.5e-07 58.9 89 40.4
QL04p034975 Quercus lobata HOM05D000938 ORTHO05D003373 2.5e-07 58.9 88 39.8
Medtr3g467350 Medicago truncatula HOM05D000938 ORTHO05D003373 3.3e-07 58.5 93 38.7
COL.COLO4_06141 Corchorus olitorius HOM05D005389 ORTHO05D008484 4.3e-07 58.2 84 39.3
Haze_19126 Corylus avellana HOM05D000938 ORTHO05D003373 4.3e-07 58.2 85 40.0
Lju41C30G11 Lonicera japonica HOM05D000938 ORTHO05D003373 5.7e-07 57.8 84 36.9
GSVIVG01035081001 Vitis vinifera HOM05D000938 ORTHO05D003373 5.7e-07 57.8 89 44.9
CSS0029236 Camellia sinensis var. sinensis HOM05D000938 ORTHO05D003373 7.4e-07 57.4 65 41.5
GSVIVG01032535001 Vitis vinifera HOM05D000938 ORTHO05D003373 7.4e-07 57.4 89 42.7
MELO3C009925.2 Cucumis melo HOM05D000938 ORTHO05D003373 9.6e-07 57.0 86 40.7
MD09G1039000 Malus domestica HOM05D000938 ORTHO05D003373 9.6e-07 57.0 90 36.7
Medtr3g467360 Medicago truncatula HOM05D000938 ORTHO05D003373 9.6e-07 57.0 93 37.6
TPR.G33057 Trifolium pratense HOM05D000938 ORTHO05D003373 9.6e-07 57.0 67 46.3
GSVIVG01032530001 Vitis vinifera HOM05D000938 ORTHO05D003373 1.3e-06 56.6 89 42.7
Cpa.g.sc14.87 Carica papaya HOM05D000938 ORTHO05D003373 1.6e-06 56.2 85 41.2
Ciclev10011372m.g Citrus clementina HOM05D000938 ORTHO05D003373 1.6e-06 56.2 83 38.6
Lju41C31G4 Lonicera japonica HOM05D000938 ORTHO05D003373 1.6e-06 56.2 83 37.3
RcHm_v2.0_Chr7g0219541 Rosa chinensis HOM05D000938 ORTHO05D003373 1.6e-06 56.2 82 40.2
Haze_05423 Corylus avellana HOM05D000011 ORTHO05D003373 2.1e-06 55.8 87 42.5
Potri.019G005256 Populus trichocarpa HOM05D000938 ORTHO05D003373 2.1e-06 55.8 88 35.2
ECA232G0762 Erigeron canadensis HOM05D000938 ORTHO05D003373 3.7e-06 55.1 83 38.6
Lju41A31T32 Lonicera japonica HOM05D000938 ORTHO05D003373 3.7e-06 55.1 83 39.8
Medtr6g007975 Medicago truncatula HOM05D000938 ORTHO05D003373 3.7e-06 55.1 94 39.4
Medtr6g008055 Medicago truncatula HOM05D000938 ORTHO05D003373 3.7e-06 55.1 96 36.5
Eucgr.C00300 Eucalyptus grandis HOM05D000938 ORTHO05D003373 4.8e-06 54.7 68 45.6
Lj1g0017446 Lotus japonicus HOM05D000938 ORTHO05D003373 4.8e-06 54.7 88 38.6
Lalb_Chr21g0319301 Lupinus albus HOM05D000938 ORTHO05D003373 4.8e-06 54.7 86 40.7
Actinidia11365 Actinidia chinensis HOM05D000938 ORTHO05D003373 6.2e-06 54.3 90 36.7
Lj2g0002792 Lotus japonicus HOM05D000938 ORTHO05D003373 6.2e-06 54.3 92 41.3
Potri.009G086100 Populus trichocarpa HOM05D000938 ORTHO05D003373 6.2e-06 54.3 91 39.6
FAN09G2300 Fragaria x ananassa HOM05D005389 ORTHO05D008484 8.2e-06 53.9 84 39.3
Gohir.A07G218000 Gossypium hirsutum HOM05D000938 ORTHO05D003373 8.2e-06 53.9 90 35.6


User provided reference genes

Program Settings