Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01785 Eucalyptus grandis HOM05D006084 ORTHO05D007449 4.1e-119 431.4 217 100.0
Manes.17G116000 Manihot esculenta HOM05D006084 ORTHO05D007449 9.6e-52 207.6 128 78.9
QL02p076043 Quercus lobata HOM05D006084 ORTHO05D007449 2.1e-51 206.5 124 80.6
QL02p076078 Quercus lobata HOM05D006084 ORTHO05D007449 2.1e-51 206.5 124 80.6
Cfa007418 Carpinus fangiana HOM05D006084 ORTHO05D007449 2.4e-50 203.0 125 78.4
CiPaw.03G039200 Carya illinoinensis HOM05D006084 ORTHO05D007449 5.3e-50 201.8 125 76.8
Haze_14684 Corylus avellana HOM05D006084 ORTHO05D007449 6.9e-50 201.4 124 78.2
Dinv33481 Davidia involucrata HOM05D006084 ORTHO05D007449 2.0e-49 199.9 123 78.0
Rhsim08G0053800 Rhododendron simsii HOM05D006084 ORTHO05D007449 2.6e-49 199.5 125 76.8
TAR371G1194 Trochodendron aralioides HOM05D006084 ORTHO05D007449 3.4e-49 199.1 125 77.6
Prupe.3G286100 Prunus persica HOM05D006084 ORTHO05D007449 7.6e-49 198.0 121 78.5
CSS0000489 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 1.7e-48 196.8 125 77.6
CSS0035017 Camellia sinensis var. sinensis HOM05D006084 ORTHO05D007449 1.7e-48 196.8 125 77.6
Aqoxy3G02941 Aquilegia oxysepala HOM05D006084 ORTHO05D007449 2.2e-48 196.4 123 77.2
Actinidia35746 Actinidia chinensis HOM05D006084 ORTHO05D007449 3.8e-48 195.7 123 77.2
Gohir.A07G221200 Gossypium hirsutum HOM05D006084 ORTHO05D007449 1.9e-47 193.4 125 72.8
Atru.chr6.2220 Acer truncatum HOM05D006084 ORTHO05D007449 2.4e-47 193.0 125 74.4
Thecc.04G011100 Theobroma cacao HOM05D006084 ORTHO05D007449 2.4e-47 193.0 125 74.4
PGR142G2538 Punica granatum HOM05D006084 ORTHO05D007449 7.1e-47 191.4 125 75.2
Hma1.2p1_0846F.1_g227700 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 1.2e-46 190.7 125 74.4
RcHm_v2.0_Chr2g0172221 Rosa chinensis HOM05D006084 ORTHO05D007449 1.2e-46 190.7 120 75.0
Gohir.D07G227900 Gossypium hirsutum HOM05D006084 ORTHO05D007449 1.6e-46 190.3 125 72.8
FAN02G2714 Fragaria x ananassa HOM05D006084 ORTHO05D007449 2.7e-46 189.5 129 71.3
MD17G1033600 Malus domestica HOM05D006084 ORTHO05D007449 2.7e-46 189.5 121 73.6
PGSC0003DMG400000490 Solanum tuberosum HOM05D006084 ORTHO05D007449 3.5e-46 189.1 119 78.2
FvH4_6g50830 Fragaria vesca HOM05D006084 ORTHO05D007449 4.6e-46 188.7 120 74.2
CAN.G206.22 Capsicum annuum HOM05D006084 ORTHO05D007449 7.9e-46 188.0 119 75.6
Ca_16579_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 7.9e-46 188.0 123 73.2
CDE08G0643 Ceratophyllum demersum HOM05D006084 ORTHO05D007449 1.0e-45 187.6 125 69.6
FAN14G2625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.3e-45 187.2 120 73.3
Hund02345 Selenicereus undatus HOM05D006084 ORTHO05D007449 1.8e-45 186.8 125 70.4
Potri.001G349500 Populus trichocarpa HOM05D006084 ORTHO05D007449 2.3e-45 186.4 125 73.6
ATR0730G058 Amborella trichopoda HOM05D006084 ORTHO05D007449 3.9e-45 185.7 118 74.6
Sp6g29330 Schrenkiella parvula HOM05D006084 ORTHO05D007449 3.9e-45 185.7 141 66.0
ATR1096G027 Amborella trichopoda HOM05D006084 ORTHO05D007449 5.1e-45 185.3 124 70.2
Glyma.04G247000 Glycine max HOM05D006084 ORTHO05D007449 6.7e-45 184.9 123 71.5
BcaB01g05101 Brassica carinata HOM05D006084 ORTHO05D007449 8.7e-45 184.5 125 71.2
C03p07740 Brassica napus HOM05D006084 ORTHO05D007449 8.7e-45 184.5 125 71.2
BolC3t13274H Brassica oleracea HOM05D006084 ORTHO05D007449 8.7e-45 184.5 125 71.2
Lalb_Chr10g0093921 Lupinus albus HOM05D006084 ORTHO05D007449 8.7e-45 184.5 123 72.4
Medtr3g088470 Medicago truncatula HOM05D006084 ORTHO05D007449 8.7e-45 184.5 125 70.4
Sopen02g031550 Solanum pennellii HOM05D006084 ORTHO05D007449 8.7e-45 184.5 119 76.5
GSVIVG01032459001 Vitis vinifera HOM05D006084 ORTHO05D007449 8.7e-45 184.5 118 77.1
FAN05G5625 Fragaria x ananassa HOM05D006084 ORTHO05D007449 1.1e-44 184.1 118 73.7
A02p02680 Brassica napus HOM05D006084 ORTHO05D007449 1.5e-44 183.7 125 70.4
BraA02t05237Z Brassica rapa HOM05D006084 ORTHO05D007449 1.5e-44 183.7 125 70.4
CARHR198600 Cardamine hirsuta HOM05D006084 ORTHO05D007449 1.9e-44 183.3 125 70.4
Glyma.06G115700 Glycine max HOM05D006084 ORTHO05D007449 1.9e-44 183.3 123 69.9
A03p06720 Brassica napus HOM05D006084 ORTHO05D007449 3.3e-44 182.6 125 69.6
HanXRQChr07g0198791 Helianthus annuus HOM05D006084 ORTHO05D007449 4.3e-44 182.2 123 70.7
THA.LOC104821076 Tarenaya hassleriana HOM05D006084 ORTHO05D007449 5.6e-44 181.8 125 68.8
TPR.G13476 Trifolium pratense HOM05D006084 ORTHO05D007449 7.4e-44 181.4 123 71.5
TWI12G0619 Tripterygium wilfordii HOM05D006084 ORTHO05D007449 9.6e-44 181.0 125 72.0
BcaNung03101 Brassica carinata HOM05D006084 ORTHO05D007449 1.3e-43 180.6 120 70.8
Carub.0006s1288 Capsella rubella HOM05D006084 ORTHO05D007449 1.6e-43 180.3 125 68.8
BraA03t10005Z Brassica rapa HOM05D006084 ORTHO05D007449 2.1e-43 179.9 125 68.8
ECA238G3069 Erigeron canadensis HOM05D006084 ORTHO05D007449 2.1e-43 179.9 123 72.4
Thhalv10015025m.g Eutrema salsugineum HOM05D006084 ORTHO05D007449 2.1e-43 179.9 118 72.0
Phvul.009G127800 Phaseolus vulgaris HOM05D006084 ORTHO05D007449 2.1e-43 179.9 123 69.1
Cc07_g02120 Coffea canephora HOM05D006084 ORTHO05D007449 2.8e-43 179.5 125 69.6
AL6G25480 Arabidopsis lyrata HOM05D006084 ORTHO05D007449 3.6e-43 179.1 125 68.8
BcaC03g13452 Brassica carinata HOM05D006084 ORTHO05D007449 3.6e-43 179.1 125 68.8
C02p07250 Brassica napus HOM05D006084 ORTHO05D007449 3.6e-43 179.1 125 68.8
BolC2t06657H Brassica oleracea HOM05D006084 ORTHO05D007449 3.6e-43 179.1 125 68.8
PSO210G7688 Papaver somniferum HOM05D006084 ORTHO05D007449 6.2e-43 178.3 128 67.2
AT5G14710 Arabidopsis thaliana HOM05D006084 ORTHO05D007449 8.1e-43 177.9 125 68.0
COL.COLO4_28991 Corchorus olitorius HOM05D006084 ORTHO05D007449 8.1e-43 177.9 142 63.4
Aa31LG11G14750 Aethionema arabicum HOM05D006084 ORTHO05D007449 1.1e-42 177.6 125 69.6
Lj1g0023236 Lotus japonicus HOM05D006084 ORTHO05D007449 1.1e-42 177.6 125 66.4
HPP92_022049 Vanilla planifolia HOM05D006084 ORTHO05D007449 1.1e-42 177.6 123 69.1
Os10g0395500 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 1.4e-42 177.2 120 69.2
HanXRQChr14g0450361 Helianthus annuus HOM05D006084 ORTHO05D007449 2.4e-42 176.4 123 69.1
Sc03g0007970 Simmondsia chinensis HOM05D006084 ORTHO05D007449 3.1e-42 176.0 125 64.8
CANSAT64G0964 Cannabis sativa HOM05D006084 ORTHO05D007449 4.0e-42 175.6 123 67.5
CsaV3_5G027340 Cucumis sativus L. HOM05D006084 ORTHO05D007449 9.0e-42 174.5 125 68.0
PSO566G0352 Papaver somniferum HOM05D006084 ORTHO05D007449 1.5e-41 173.7 127 66.1
PSO782G1469 Papaver somniferum HOM05D006084 ORTHO05D007449 2.6e-41 172.9 124 66.9
Sed0018290 Sechium edule HOM05D006084 ORTHO05D007449 3.4e-41 172.6 125 66.4
BcaC04g19017 Brassica carinata HOM05D006084 ORTHO05D007449 5.8e-41 171.8 120 69.2
MELO3C005689.2 Cucumis melo HOM05D006084 ORTHO05D007449 7.6e-41 171.4 125 67.2
Hma1.2p1_0056F.1_g031653 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 7.6e-41 171.4 105 78.1
Oeu004718.1 Olea europaea HOM05D006084 ORTHO05D007449 9.9e-41 171.0 120 72.5
FAN09G3162 Fragaria x ananassa HOM05D006084 ORTHO05D007449 2.9e-40 169.5 106 75.5
Hma1.2p1_1415F.1_g281960 Hydrangea macrophylla HOM05D006084 ORTHO05D007449 3.8e-40 169.1 105 78.1
MSTRG.3166 Avicennia marina HOM05D006084 ORTHO05D007449 4.9e-40 168.7 120 67.5
arahy.Tifrunner.gnm1.ann1.DMWP0X Arachis hypogaea HOM05D006084 ORTHO05D007449 6.4e-40 168.3 119 69.7
arahy.Tifrunner.gnm1.ann1.2LS7ZQ Arachis hypogaea HOM05D006084 ORTHO05D007449 1.9e-39 166.8 119 68.9
Peaxi162Scf00129g01228 Petunia axillaris HOM05D006084 ORTHO05D007449 1.9e-39 166.8 105 75.2
Migut.H00108 Erythranthe guttata HOM05D006084 ORTHO05D007449 5.5e-39 165.2 120 69.2
Zm00001eb048120 Zea mays HOM05D006084 ORTHO05D007449 5.5e-39 165.2 118 66.9
arahy.Tifrunner.gnm1.ann1.48HX9C Arachis hypogaea HOM05D006084 ORTHO05D007449 7.1e-39 164.9 119 68.1
SGA_v2.0_scaffold2848G54225 Striga asiatica HOM05D006084 ORTHO05D007449 4.6e-38 162.2 115 68.7
ClCG09G019010 Citrullus lanatus HOM05D006084 ORTHO05D007449 7.9e-38 161.4 147 57.8
EL10Ac3g07214 Beta vulgaris HOM05D006084 ORTHO05D007449 1.8e-37 160.2 113 69.0
Gorai.001G262800 Gossypium raimondii HOM05D006084 ORTHO05D007449 2.3e-37 159.8 107 71.0
unitig_746.g26552 Utricularia gibba HOM05D006084 ORTHO05D007449 3.9e-37 159.1 118 65.3
C09p62430 Brassica napus HOM05D006084 ORTHO05D007449 5.1e-37 158.7 110 69.1
Nn3g16859 Nelumbo nucifera HOM05D006084 ORTHO05D007449 1.9e-36 156.8 118 70.3
ClCG00G003490 Citrullus lanatus HOM05D006084 ORTHO05D007449 2.5e-36 156.4 145 57.2
arahy.Tifrunner.gnm1.ann1.GQ5XJ3 Arachis hypogaea HOM05D006084 ORTHO05D007449 7.4e-36 154.8 136 58.8
BolC9t59081H Brassica oleracea HOM05D006084 ORTHO05D007449 1.3e-35 154.1 110 67.3
Mapoly0005s0179 Marchantia polymorpha HOM05D006084 ORTHO05D007449 1.4e-34 150.6 121 59.5
Pp3c26_1260 Physcomitrium patens HOM05D006084 ORTHO05D007449 3.1e-34 149.4 132 55.3
MBI19_g17406_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 9.0e-34 147.9 129 58.1
AUR62031990 Chenopodium quinoa HOM05D006084 ORTHO05D007449 1.2e-33 147.5 125 61.6
Lsat_1_v5_gn_2_91880 Lactuca sativa HOM05D006084 ORTHO05D007449 1.2e-33 147.5 123 61.8
Sabra16G0228900 Salix brachista HOM05D006084 ORTHO05D007449 2.0e-33 146.7 217 42.4
MBI19_g07248_MAGBIO Magnolia biondii HOM05D006084 ORTHO05D007449 2.9e-32 142.9 131 57.3
Duzib264G1216 Durio zibethinus HOM05D006084 ORTHO05D007449 6.5e-32 141.7 89 73.0
SHI16396 Sapria himalayana HOM05D006084 ORTHO05D007449 7.1e-31 138.3 101 62.4
Cpa.g.c30698.2 Carica papaya HOM05D006084 ORTHO05D007449 9.3e-31 137.9 88 78.4
Nitab4.5_0007141g0020 Nicotiana tabacum HOM05D006084 ORTHO05D007449 3.5e-30 136.0 107 64.5
Solyc02g086780.4 Solanum lycopersicum HOM05D006084 ORTHO05D007449 4.3e-28 129.0 81 79.0
SMO367G0706 Selaginella moellendorffii HOM05D006084 ORTHO05D007449 2.1e-27 126.7 105 60.0
DCAR_011237 Daucus carota HOM05D006084 ORTHO05D007449 2.0e-25 120.2 113 58.4
Ciclev10017692m.g Citrus clementina HOM05D006084 ORTHO05D007449 2.6e-25 119.8 74 73.0
CBR_g5628 Chara braunii HOM05D006084 ORTHO05D007449 5.9e-25 118.6 128 49.2
AUR62030334 Chenopodium quinoa HOM05D006084 ORTHO05D007449 1.3e-24 117.5 74 74.3
Nitab4.5_0006281g0070 Nicotiana tabacum HOM05D006084 ORTHO05D007449 1.4e-23 114.0 74 75.7
Ca_03224_v3 Cicer arietinum L. HOM05D006084 ORTHO05D007449 3.6e-22 109.4 72 68.1
BraA10t44460Z Brassica rapa HOM05D006084 ORTHO05D007449 3.0e-21 106.3 90 63.3
AagrBONN_evm.TU.Sc2ySwM_228.3157 Anthoceros agrestis HOM05D006084 ORTHO05D007449 3.9e-21 105.9 81 55.6
Os01g0339600 Oryza sativa ssp. japonica HOM05D006084 ORTHO05D007449 6.3e-19 98.6 70 68.6
MELO3C033557.2 Cucumis melo HOM05D006084 ORTHO05D007449 4.5e-17 92.4 95 52.6
arahy.Tifrunner.gnm1.ann1.2H702Y Arachis hypogaea HOM05D006084 ORTHO05D007449 7.7e-17 91.7 61 68.9
Cre13.g571000 Chlamydomonas reinhardtii HOM05D006084 ORTHO05D007449 1.4e-15 87.4 117 37.6
Dinv35076 Davidia involucrata HOM05D006084 ORTHO05D007449 6.7e-13 78.6 52 69.2
SEGI_25092 Sequoiadendron giganteum HOM05D006084 ORTHO05D007449 1.5e-12 77.4 62 56.5
A10p23960 Brassica napus HOM05D006084 ORTHO05D007449 4.8e-11 72.4 131 38.2
MCO07G269 Micromonas commoda HOM05D006084 ORTHO05D007449 7.9e-06 55.1 103 31.1


User provided reference genes

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