Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 3.0e-176 621.7 310 100.0
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 4.6e-140 501.5 309 79.6
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 6.0e-140 501.1 308 80.8
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 1.3e-139 500.0 307 79.5
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 2.3e-139 499.2 308 80.8
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 5.1e-139 498.0 307 79.5
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 6.6e-139 497.7 309 81.2
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 6.6e-139 497.7 309 81.2
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 6.6e-139 497.7 307 79.2
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 5.6e-138 494.6 307 78.8
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 7.3e-138 494.2 308 79.2
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 9.6e-138 493.8 313 79.2
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 1.6e-137 493.0 307 78.8
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 2.1e-137 492.7 308 79.5
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 2.8e-137 492.3 309 80.3
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 3.6e-137 491.9 308 78.6
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 1.1e-136 490.3 308 78.6
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 1.4e-136 490.0 309 78.3
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 1.8e-136 489.6 312 76.9
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 3.1e-136 488.8 310 77.7
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 5.2e-136 488.0 304 78.3
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 6.9e-136 487.6 309 79.3
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.9e-136 487.3 308 78.6
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 1.2e-135 486.9 309 79.0
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 1.5e-135 486.5 309 78.6
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.0e-135 486.1 308 78.6
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 2.6e-135 485.7 308 76.3
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 3.4e-135 485.3 313 76.7
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 3.4e-135 485.3 309 78.3
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 5.8e-135 484.6 310 78.1
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 5.8e-135 484.6 308 77.3
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 9.9e-135 483.8 309 78.0
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 9.9e-135 483.8 307 77.5
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 9.9e-135 483.8 308 77.3
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 6.4e-134 481.1 306 77.5
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 8.4e-134 480.7 309 78.6
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 8.4e-134 480.7 308 76.9
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 1.4e-133 479.9 309 78.3
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 1.4e-133 479.9 309 77.3
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.4e-133 479.9 305 77.7
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 1.4e-133 479.9 311 77.8
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.9e-133 479.6 308 77.6
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 4.2e-133 478.4 311 77.8
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 5.4e-133 478.0 309 78.0
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 7.1e-133 477.6 309 76.4
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 7.1e-133 477.6 308 77.9
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 9.3e-133 477.2 309 77.7
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 1.6e-132 476.5 309 76.7
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 2.7e-132 475.7 308 76.3
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 1.0e-131 473.8 312 75.6
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 1.0e-131 473.8 308 76.6
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 1.0e-131 473.8 308 76.3
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 1.3e-131 473.4 308 76.0
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 1.7e-131 473.0 309 78.0
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 1.7e-131 473.0 309 77.7
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 3.0e-131 472.2 309 78.3
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 6.6e-131 471.1 307 73.9
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 6.6e-131 471.1 310 75.8
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 6.6e-131 471.1 309 77.7
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 6.6e-131 471.1 314 74.8
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 6.6e-131 471.1 310 76.8
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 6.6e-131 471.1 309 78.3
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 8.7e-131 470.7 309 74.8
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 8.7e-131 470.7 310 76.5
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 1.1e-130 470.3 314 74.8
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 1.9e-130 469.5 310 76.5
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 2.5e-130 469.2 309 78.3
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 4.3e-130 468.4 328 73.8
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 7.3e-130 467.6 309 75.4
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 7.3e-130 467.6 308 77.6
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 7.3e-130 467.6 309 75.4
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 9.6e-130 467.2 308 75.3
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 2.1e-129 466.1 308 75.0
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 2.8e-129 465.7 309 75.4
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 1.4e-128 463.4 307 75.2
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 1.2e-127 460.3 309 76.1
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 3.4e-127 458.8 319 73.4
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 4.5e-127 458.4 314 72.9
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 2.2e-126 456.1 307 74.3
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 4.9e-126 454.9 317 73.5
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 1.1e-125 453.8 309 74.1
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 2.4e-125 452.6 309 72.5
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 3.2e-125 452.2 329 69.3
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 2.1e-124 449.5 319 70.2
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 3.5e-124 448.7 319 70.2
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 6.0e-124 448.0 321 70.4
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 6.0e-124 448.0 323 69.7
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 6.0e-124 448.0 299 74.2
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 1.3e-123 446.8 316 70.9
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 4.3e-122 441.8 297 74.7
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 9.6e-122 440.7 332 71.1
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 1.4e-120 436.8 279 78.9
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 1.8e-120 436.4 261 81.2
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 1.8e-120 436.4 279 77.4
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 6.9e-120 434.5 318 68.2
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 9.0e-120 434.1 318 68.2
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 9.0e-120 434.1 315 69.5
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 2.6e-119 432.6 318 67.9
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 2.9e-118 429.1 325 66.5
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 1.4e-117 426.8 319 68.3
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 4.2e-117 425.2 306 70.9
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 4.6e-116 421.8 254 80.7
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 7.9e-116 421.0 308 71.1
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 1.6e-113 413.3 319 66.1
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.4e-112 410.2 251 79.7
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 5.3e-112 408.3 324 64.5
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 2.0e-111 406.4 260 78.1
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 3.4e-111 405.6 306 67.0
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 8.4e-110 401.0 305 67.2
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 7.1e-109 397.9 323 64.7
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 6.0e-108 394.8 315 63.8
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 9.0e-104 380.9 308 66.2
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 1.0e-102 377.5 221 83.3
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 3.6e-100 369.0 309 66.0
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 4.6e-100 368.6 229 75.5
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 6.1e-100 368.2 231 77.1
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 7.9e-100 367.9 337 57.6
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 3.0e-99 365.9 301 63.8
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 3.9e-99 365.5 301 63.5
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 4.3e-98 362.1 332 58.1
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 1.8e-96 356.7 308 61.0
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 4.8e-89 332.0 172 95.9
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 9.1e-88 327.8 204 79.4
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 1.2e-87 327.4 222 74.8
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 3.9e-83 312.4 236 64.8
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 2.9e-78 296.2 320 53.4
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 5.5e-77 292.0 274 56.9
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 8.0e-76 288.1 165 84.8
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 2.3e-75 286.6 314 51.9
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 2.3e-75 286.6 209 69.9
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 1.2e-68 264.2 157 83.4
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 8.3e-65 251.5 171 76.0
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 1.8e-64 250.4 150 80.0
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 2.0e-63 246.9 358 41.3
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.2e-59 232.3 134 82.8
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 7.0e-56 221.9 163 66.3
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 1.0e-51 208.0 293 42.0
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.4e-50 203.0 112 86.6
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.5e-50 201.8 121 78.5
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-49 201.1 121 77.7
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.7e-49 200.7 121 77.7
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.7e-49 200.7 121 77.7
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.4e-49 198.7 121 76.9
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.4e-48 197.6 118 78.8
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.8e-48 197.2 118 79.7
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 4.1e-48 196.1 131 74.8
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 9.2e-48 194.9 116 79.3
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.6e-47 194.1 118 77.1
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 6.0e-47 192.2 118 76.3
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.5e-45 184.9 294 42.5
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 1.7e-41 174.1 240 43.8
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 5.4e-40 169.1 102 76.5
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.0e-40 168.7 93 87.1
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 3.5e-39 166.4 102 75.5
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.6e-36 157.5 156 55.8
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 4.6e-31 139.4 84 76.2
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 1.8e-27 127.5 90 68.9
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 2.6e-26 123.6 135 52.6
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 3.2e-24 116.7 95 60.0
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 3.2e-24 116.7 95 60.0
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.1e-22 109.4 63 85.7
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.1e-21 108.2 63 85.7
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.1e-20 104.0 74 75.7
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.2e-20 102.4 92 62.0
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.4e-19 100.5 92 60.9
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.2e-19 99.4 92 59.8
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 1.4e-16 91.3 230 29.6
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 9.3e-16 88.6 80 57.5
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 4.6e-15 86.3 106 50.0
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 4.6e-15 86.3 81 61.7
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 7.8e-15 85.5 62 64.5
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 3.9e-14 83.2 50 74.0
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 3.9e-14 83.2 50 74.0
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.1e-13 81.6 50 72.0
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 1.1e-13 81.6 50 72.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 2.5e-13 80.5 47 72.3
AL4G39060 Arabidopsis lyrata HOM05D000001 ORTHO05D009069 4.9e-09 66.2 122 37.7
Medtr2g014570 Medicago truncatula HOM05D003958 ORTHO05D004864 4.2e-08 63.2 62 54.8


User provided reference genes

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