Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 0.0e+00 3611.6 1853 100.0
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 2197.2 1873 60.9
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 0.0e+00 2178.7 1861 62.3
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 2161.3 1865 61.1
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 2113.2 1867 59.3
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 2095.1 1863 59.5
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 2092.8 1866 59.8
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 2087.8 1866 59.3
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 2080.4 1862 58.9
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 2073.1 1867 58.9
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 2062.7 1868 59.0
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 2062.0 1862 58.6
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 2054.3 1949 56.9
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 2053.9 1867 58.0
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 2031.9 1866 58.3
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 2027.3 1870 58.5
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 2020.7 1868 56.9
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 2003.4 1869 56.8
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1942.5 1866 56.1
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1936.4 1866 55.9
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 0.0e+00 1929.8 1870 55.0
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 0.0e+00 1928.7 1868 54.6
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1927.5 2015 53.4
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 0.0e+00 1918.7 1866 53.4
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1915.2 2057 52.5
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1907.5 1868 55.5
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1886.7 1866 53.8
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 0.0e+00 1883.6 1863 53.2
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 1880.5 1863 53.9
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 0.0e+00 1869.4 1866 52.9
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 0.0e+00 1866.3 1870 53.7
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1862.0 1900 52.8
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 0.0e+00 1859.3 1866 53.3
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 0.0e+00 1859.0 1998 52.2
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 1855.1 1718 58.0
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 0.0e+00 1848.2 1978 52.5
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 0.0e+00 1845.1 1871 53.3
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 0.0e+00 1844.7 1872 53.2
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 0.0e+00 1839.7 1867 52.3
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 1837.4 1883 52.3
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1823.5 1867 52.5
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 1822.0 1706 57.1
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 0.0e+00 1810.0 1866 51.6
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 0.0e+00 1808.1 1862 52.7
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 0.0e+00 1801.2 1862 52.5
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 0.0e+00 1760.7 1868 51.6
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 0.0e+00 1759.2 1869 51.7
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 1755.7 1866 50.9
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1748.0 1883 50.3
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1741.1 1887 50.2
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1738.4 1867 51.3
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 0.0e+00 1737.2 1865 51.0
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 0.0e+00 1729.1 1866 50.8
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 0.0e+00 1724.5 1867 50.7
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1722.6 1867 50.6
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1720.3 1861 50.7
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1720.3 1861 50.7
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 0.0e+00 1720.3 1861 50.7
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 0.0e+00 1715.3 1736 52.5
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 0.0e+00 1711.8 1882 50.3
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 0.0e+00 1709.5 1866 50.5
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 1691.4 1862 50.6
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 0.0e+00 1683.7 1879 49.9
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 0.0e+00 1681.0 1864 50.2
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 0.0e+00 1666.0 1879 49.6
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 0.0e+00 1661.0 1520 58.0
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1614.7 1508 57.2
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 0.0e+00 1614.4 1863 49.5
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 0.0e+00 1614.0 1886 47.6
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 0.0e+00 1611.3 1702 51.8
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1597.4 1651 52.4
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1573.5 1455 57.5
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1539.2 1896 46.9
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 0.0e+00 1527.7 1964 44.4
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1514.6 1869 46.4
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1503.8 1871 46.3
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 0.0e+00 1494.2 1933 44.7
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 0.0e+00 1458.0 1902 46.2
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 0.0e+00 1403.3 1884 43.4
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1348.6 2080 40.1
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 0.0e+00 1338.9 1371 51.9
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 0.0e+00 1301.6 1351 52.0
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1291.2 1912 42.3
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 0.0e+00 1248.0 1394 50.2
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 0.0e+00 1229.9 1303 51.1
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 0.0e+00 1229.9 1230 53.3
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 0.0e+00 1202.2 1864 40.1
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1144.0 1183 53.5
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 0.0e+00 1132.5 1871 38.9
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 2.6e-307 1059.7 971 58.4
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 1.1e-257 894.8 1036 47.7
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 5.4e-244 849.4 839 53.9
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 3.5e-243 846.7 941 49.6
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 2.1e-232 810.8 646 65.2
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 4.0e-223 780.0 1948 30.7
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 1.5e-222 778.1 949 48.9
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 1.9e-217 761.1 729 56.4
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 5.8e-198 696.4 844 45.3
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 6.7e-186 656.4 650 54.5
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.1e-178 630.2 623 53.8
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 6.5e-173 613.2 589 56.5
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 8.4e-173 612.8 832 44.5
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 1.1e-169 602.4 1154 36.4
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 3.7e-168 597.4 796 42.8
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 6.7e-162 576.6 536 57.5
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.3e-161 573.9 653 47.5
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 2.6e-158 564.7 1847 26.9
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.1e-148 532.7 541 52.5
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 2.0e-118 432.2 411 56.0
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.5e-116 426.0 633 41.4
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 1.9e-116 425.6 433 50.8
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 1.5e-113 416.0 458 52.0
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.9e-112 411.8 372 56.2
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 6.4e-112 410.6 437 51.3
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.1e-106 393.3 448 47.3
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 8.3e-104 383.6 346 56.9
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 6.6e-101 374.0 431 49.2
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 7.3e-100 370.5 343 57.4
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 9.9e-97 360.1 335 55.5
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 2.6e-89 335.5 350 52.9
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 8.4e-88 330.5 393 48.3
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.3e-80 306.6 443 39.1
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 2.9e-80 305.4 546 37.5
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 2.0e-73 282.7 616 33.3
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 1.5e-68 266.5 208 63.9
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 4.0e-66 258.5 333 40.8
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 1.1e-63 250.4 266 47.7
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 3.5e-62 245.4 275 46.5
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.3e-61 243.4 258 53.9
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 4.3e-60 238.4 194 61.9
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 1.7e-56 226.5 226 54.9
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 4.5e-49 201.8 282 44.0
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 2.5e-47 196.1 840 25.8
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 5.5e-47 194.9 202 52.0
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.8e-45 189.9 271 42.8
Phvul.004G009701 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.8e-45 189.9 186 49.5
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 2.8e-43 182.6 217 47.9
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 3.1e-42 179.1 132 65.9
Atru.chr6.2281 Acer truncatum HOM05D004010 ORTHO05D004995 1.2e-41 177.2 142 61.3
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 1.7e-40 173.3 154 59.7
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 3.2e-39 169.1 223 44.4
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 2.1e-38 166.4 146 61.6
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 1.8e-37 163.3 161 55.9
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.5e-36 160.2 177 50.3
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 5.7e-36 158.3 176 48.9
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 5.7e-36 158.3 131 61.1
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 7.0e-34 151.4 882 24.8
HPP92_004912 Vanilla planifolia HOM05D004010 ORTHO05D004995 1.6e-33 150.2 159 50.9
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 1.3e-32 147.1 186 45.7
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 6.1e-30 138.3 123 52.0
Phvul.004G009127 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.4e-29 137.1 134 55.2
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 6.7e-29 134.8 220 39.1
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 3.7e-27 129.0 140 54.3
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.1e-26 125.6 150 48.7
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 3.8e-24 119.0 90 64.4
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 2.6e-20 106.3 178 34.8
Phvul.004G008861 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.2e-19 103.2 104 50.0
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 1.4e-18 100.5 75 61.3
Atru.chr6.2280 Acer truncatum HOM05D004010 ORTHO05D004995 3.2e-15 89.4 98 44.9
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 9.4e-15 87.8 93 46.2
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 2.7e-14 86.3 52 76.9
Phvul.004G009000 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.7e-12 78.6 109 36.7
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 1.7e-11 77.0 102 44.1
HPP92_004913 Vanilla planifolia HOM05D004010 ORTHO05D004995 2.2e-11 76.6 88 53.4
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 8.3e-11 74.7 131 36.6
FvH4_6g51541 Fragaria vesca HOM05D004010 ORTHO05D004995 3.1e-10 72.8 53 67.9
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 5.4e-10 72.0 65 56.9
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 5.4e-10 72.0 65 56.9
TPR.G14699 Trifolium pratense HOM05D000127 ORTHO05D000243 3.8e-08 65.9 85 40.0
TPR.G14702 Trifolium pratense HOM05D000127 ORTHO05D000243 7.3e-07 61.6 68 45.6
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 4.7e-06 58.9 123 30.9
Hma1.2p1_2269F.1_g318480 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 8.0e-06 58.2 55 47.3


User provided reference genes

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