Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01636 Eucalyptus grandis HOM05D003418 ORTHO05D004105 5.8e-60 234.2 132 100.0
Glyma.19G093400 Glycine max HOM05D003418 ORTHO05D004105 4.2e-18 95.1 144 47.2
TAR374G1678 Trochodendron aralioides HOM05D003418 ORTHO05D004105 4.4e-15 85.1 115 51.3
Eucgr.E04262 Eucalyptus grandis HOM05D064836 ORTHO05D004105 9.7e-15 84.0 107 53.3
Haze_12439 Corylus avellana HOM05D003418 ORTHO05D004105 1.3e-14 83.6 112 49.1
MBI11_g22683_MAGBIO Magnolia biondii HOM05D003418 ORTHO05D004105 1.7e-14 83.2 110 49.1
Cfa007215 Carpinus fangiana HOM05D003418 ORTHO05D004105 2.2e-14 82.8 110 50.9
TAR629G2062 Trochodendron aralioides HOM05D003418 ORTHO05D004105 2.2e-14 82.8 120 48.3
Lsat_1_v5_gn_3_30720 Lactuca sativa HOM05D000660 ORTHO05D000766 4.8e-14 81.6 106 50.9
Haze_14888 Corylus avellana HOM05D003418 ORTHO05D004105 1.1e-13 80.5 110 49.1
CiPaw.03G057000 Carya illinoinensis HOM05D003418 ORTHO05D004105 1.4e-13 80.1 110 48.2
Dinv17578 Davidia involucrata HOM05D003418 ORTHO05D004105 1.8e-13 79.7 126 47.6
Prupe.1G223700 Prunus persica HOM05D003418 ORTHO05D004105 2.4e-13 79.3 110 47.3
Cc07_g00970 Coffea canephora HOM05D003418 ORTHO05D004105 4.1e-13 78.6 106 50.9
CANSAT01G2188 Cannabis sativa HOM05D003418 ORTHO05D004105 5.3e-13 78.2 109 47.7
HanXRQChr06g0174711 Helianthus annuus HOM05D003418 ORTHO05D004105 5.3e-13 78.2 108 50.9
HanXRQChr05g0128721 Helianthus annuus HOM05D003418 ORTHO05D004105 7.0e-13 77.8 120 42.5
SGA_v2.0_scaffold253G45188 Striga asiatica HOM05D003418 ORTHO05D004105 7.0e-13 77.8 109 45.9
CiPaw.06G104400 Carya illinoinensis HOM05D003418 ORTHO05D004105 9.1e-13 77.4 117 47.0
Hma1.2p1_0275F.1_g110610 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 9.1e-13 77.4 120 46.7
Oeu056671.1 Olea europaea HOM05D003418 ORTHO05D004105 9.1e-13 77.4 122 45.1
AL1G40690 Arabidopsis lyrata HOM05D003418 ORTHO05D004105 1.2e-12 77.0 109 43.1
arahy.Tifrunner.gnm1.ann1.V4TZMI Arachis hypogaea HOM05D003418 ORTHO05D004105 1.2e-12 77.0 117 47.9
arahy.Tifrunner.gnm1.ann1.XFVS70 Arachis hypogaea HOM05D003418 ORTHO05D004105 1.2e-12 77.0 117 47.9
DCAR_024672 Daucus carota HOM05D003418 ORTHO05D004105 1.2e-12 77.0 111 48.6
Eucgr.E04284 Eucalyptus grandis HOM05D064836 ORTHO05D004105 1.2e-12 77.0 65 70.8
SalBow8G1362 Salvia bowleyana HOM05D003418 ORTHO05D004105 1.2e-12 77.0 105 47.6
Ciclev10032970m.g Citrus clementina HOM05D003418 ORTHO05D004105 1.6e-12 76.6 116 45.7
Medtr7g028805 Medicago truncatula HOM05D003418 ORTHO05D004105 1.6e-12 76.6 123 45.5
THA.LOC104825492 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 1.6e-12 76.6 115 43.5
FAN17G2596 Fragaria x ananassa HOM05D003418 ORTHO05D004105 2.6e-12 75.9 116 44.8
Hma1.2p1_0065F.1_g035230 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 2.6e-12 75.9 123 44.7
PGR119G0689 Punica granatum HOM05D003418 ORTHO05D004105 2.6e-12 75.9 109 44.0
MSTRG.8015 Avicennia marina HOM05D003418 ORTHO05D004105 3.5e-12 75.5 114 42.1
Lj6g0011251 Lotus japonicus HOM05D003418 ORTHO05D004105 3.5e-12 75.5 108 47.2
TPR.G29062 Trifolium pratense HOM05D003418 ORTHO05D004105 3.5e-12 75.5 121 45.5
CiPaw.05G107800 Carya illinoinensis HOM05D003418 ORTHO05D004105 4.5e-12 75.1 115 47.8
Dinv11681 Davidia involucrata HOM05D003418 ORTHO05D004105 4.5e-12 75.1 127 47.2
Duzib251G0418 Durio zibethinus HOM05D003418 ORTHO05D004105 4.5e-12 75.1 118 44.9
TWI18G0155 Tripterygium wilfordii HOM05D003418 ORTHO05D004105 4.5e-12 75.1 129 42.6
QL03p052131 Quercus lobata HOM05D003418 ORTHO05D004105 5.9e-12 74.7 116 44.8
Sc11g0000380 Simmondsia chinensis HOM05D003418 ORTHO05D004105 5.9e-12 74.7 116 44.0
THA.LOC104807144 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 5.9e-12 74.7 111 45.0
THA.LOC104809188 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 5.9e-12 74.7 111 45.0
THA.LOC104822793 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 5.9e-12 74.7 111 45.0
unitig_22.g6403 Utricularia gibba HOM05D003418 ORTHO05D003127 5.9e-12 74.7 115 41.7
MSTRG.492 Avicennia marina HOM05D003418 ORTHO05D004105 7.7e-12 74.3 114 45.6
THA.LOC104807496 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 7.7e-12 74.3 113 43.4
Aa31LG7G9910 Aethionema arabicum HOM05D003418 ORTHO05D004105 1.0e-11 73.9 110 44.5
Glyma.11G252200 Glycine max HOM05D003418 ORTHO05D004105 1.0e-11 73.9 110 49.1
SalBow4G1936 Salvia bowleyana HOM05D003418 ORTHO05D004105 1.0e-11 73.9 107 43.9
CSS0043963 Camellia sinensis var. sinensis HOM05D003418 ORTHO05D004105 1.3e-11 73.6 122 48.4
Cpa.g.sc43.80 Carica papaya HOM05D003418 ORTHO05D004105 1.3e-11 73.6 109 43.1
SalBow4G0150 Salvia bowleyana HOM05D003418 ORTHO05D004105 1.3e-11 73.6 107 44.9
Actinidia04435 Actinidia chinensis HOM05D003418 ORTHO05D004105 1.7e-11 73.2 105 48.6
AUR62017773 Chenopodium quinoa HOM05D003418 ORTHO05D004105 1.7e-11 73.2 114 45.6
FAN07G2322 Fragaria x ananassa HOM05D003418 ORTHO05D004105 1.7e-11 73.2 118 44.1
FAN12G4113 Fragaria x ananassa HOM05D003418 ORTHO05D004105 1.7e-11 73.2 120 44.2
ATR0561G224 Amborella trichopoda HOM05D003418 ORTHO05D004105 2.2e-11 72.8 124 43.5
Ca_16446_v3 Cicer arietinum L. HOM05D003418 ORTHO05D004105 2.2e-11 72.8 105 48.6
Lsat_1_v5_gn_4_781 Lactuca sativa HOM05D003418 ORTHO05D004105 2.2e-11 72.8 117 43.6
Psat7g077520 Pisum sativum HOM05D003418 ORTHO05D004105 2.2e-11 72.8 121 42.1
PGSC0003DMG400013209 Solanum tuberosum HOM05D003418 ORTHO05D004105 2.2e-11 72.8 114 42.1
Carub.0001s2582 Capsella rubella HOM05D003418 ORTHO05D004105 2.9e-11 72.4 125 40.0
Nn3g16424 Nelumbo nucifera HOM05D003418 ORTHO05D004105 2.9e-11 72.4 117 46.2
CsaV3_4G002780 Cucumis sativus L. HOM05D003418 ORTHO05D004105 3.8e-11 72.0 109 45.0
Lj1g0017862 Lotus japonicus HOM05D003418 ORTHO05D004105 3.8e-11 72.0 121 43.8
EL10Ac6g13525 Beta vulgaris HOM05D003418 ORTHO05D004105 5.0e-11 71.6 114 45.6
MELO3C022314.2 Cucumis melo HOM05D003418 ORTHO05D004105 5.0e-11 71.6 109 43.1
Nitab4.5_0000067g0190 Nicotiana tabacum HOM05D003418 ORTHO05D004105 5.0e-11 71.6 112 43.8
AT1G27290 Arabidopsis thaliana HOM05D003418 ORTHO05D004105 6.5e-11 71.2 115 41.7
FvH4_4g23540 Fragaria vesca HOM05D003418 ORTHO05D004105 6.5e-11 71.2 120 43.3
Glyma.18G004900 Glycine max HOM05D003418 ORTHO05D004105 6.5e-11 71.2 105 49.5
SalBow7G0626 Salvia bowleyana HOM05D003418 ORTHO05D004105 6.5e-11 71.2 109 45.0
TPR.G17100 Trifolium pratense HOM05D003418 ORTHO05D004105 6.5e-11 71.2 117 43.6
Ca_18018_v3 Cicer arietinum L. HOM05D003418 ORTHO05D004105 8.5e-11 70.9 121 41.3
CsaV3_6G008230 Cucumis sativus L. HOM05D003418 ORTHO05D004105 8.5e-11 70.9 114 41.2
Actinidia08059 Actinidia chinensis HOM05D003418 ORTHO05D004105 1.1e-10 70.5 132 43.2
MD16G1121700 Malus domestica HOM05D003418 ORTHO05D004105 1.1e-10 70.5 113 41.6
RcHm_v2.0_Chr4g0429941 Rosa chinensis HOM05D003418 ORTHO05D004105 1.1e-10 70.5 118 42.4
CARHR026860 Cardamine hirsuta HOM05D003418 ORTHO05D004105 1.5e-10 70.1 113 41.6
VMungo0251G0083 Vigna mungo HOM05D003418 ORTHO05D004105 1.5e-10 70.1 121 46.3
CAN.G7.14 Capsicum annuum HOM05D003418 ORTHO05D004105 1.9e-10 69.7 114 44.7
ClCG07G015190 Citrullus lanatus HOM05D003418 ORTHO05D004105 1.9e-10 69.7 107 45.8
MD13G1121400 Malus domestica HOM05D003418 ORTHO05D004105 1.9e-10 69.7 112 42.9
Potri.003G170300 Populus trichocarpa HOM05D003418 ORTHO05D004105 1.9e-10 69.7 109 45.0
Rhsim08G0042100 Rhododendron simsii HOM05D003418 ORTHO05D004105 1.9e-10 69.7 111 45.0
SGA_v2.0_scaffold87G27173 Striga asiatica HOM05D003418 ORTHO05D004105 2.5e-10 69.3 105 42.9
Cc11_g17090 Coffea canephora HOM05D003418 ORTHO05D004105 3.2e-10 68.9 116 40.5
Duzib268G0386 Durio zibethinus HOM05D003418 ORTHO05D004105 3.2e-10 68.9 107 43.0
Medtr3g084990 Medicago truncatula HOM05D003418 ORTHO05D004105 3.2e-10 68.9 114 43.0
PGR102G1973 Punica granatum HOM05D003418 ORTHO05D004105 3.2e-10 68.9 116 40.5
EL10Ac6g15425 Beta vulgaris HOM05D000704 ORTHO05D000526 4.2e-10 68.6 115 42.6
Nn4g22281 Nelumbo nucifera HOM05D003418 ORTHO05D004105 4.2e-10 68.6 112 43.8
Manes.13G009900 Manihot esculenta HOM05D003418 ORTHO05D004105 5.5e-10 68.2 106 44.3
Phvul.L003346 Phaseolus vulgaris HOM05D003418 ORTHO05D004105 5.5e-10 68.2 112 44.6
TWI36G1005 Tripterygium wilfordii HOM05D003418 ORTHO05D004105 5.5e-10 68.2 113 44.2
arahy.Tifrunner.gnm1.ann1.V484X6 Arachis hypogaea HOM05D003418 ORTHO05D004105 7.2e-10 67.8 117 42.7
A07p11990 Brassica napus HOM05D003418 ORTHO05D004105 7.2e-10 67.8 111 40.5
BolC7t42298H Brassica oleracea HOM05D003418 ORTHO05D004105 9.4e-10 67.4 119 38.7
Ciclev10017602m.g Citrus clementina HOM05D003418 ORTHO05D004105 9.4e-10 67.4 104 45.2
arahy.Tifrunner.gnm1.ann1.R9UC9A Arachis hypogaea HOM05D003418 ORTHO05D004105 1.2e-09 67.0 117 45.3
BcaC05g26544 Brassica carinata HOM05D003418 ORTHO05D004105 1.2e-09 67.0 109 42.2
PSO478G5262 Papaver somniferum HOM05D003418 ORTHO05D004105 1.2e-09 67.0 104 48.1
Sed0008687 Sechium edule HOM05D003418 ORTHO05D004105 1.2e-09 67.0 110 41.8
TPR.G17778 Trifolium pratense HOM05D003418 ORTHO05D004105 1.2e-09 67.0 108 41.7
BcaB03g14004 Brassica carinata HOM05D003418 ORTHO05D004105 1.6e-09 66.6 111 42.3
BraA08t34595Z Brassica rapa HOM05D003418 ORTHO05D004105 1.6e-09 66.6 108 39.8
Glyma.05G148600 Glycine max HOM05D003418 ORTHO05D004105 1.6e-09 66.6 115 42.6
Phvul.001G263300 Phaseolus vulgaris HOM05D003418 ORTHO05D004105 1.6e-09 66.6 105 43.8
Solyc05g015710.3 Solanum lycopersicum HOM05D003418 ORTHO05D004105 1.6e-09 66.6 123 39.0
Thecc.04G039200 Theobroma cacao HOM05D003418 ORTHO05D004105 1.6e-09 66.6 115 40.9
A08p26430 Brassica napus HOM05D003418 ORTHO05D004105 2.1e-09 66.2 108 39.8
BolC3t19656H Brassica oleracea HOM05D003418 ORTHO05D004105 2.1e-09 66.2 108 39.8
MELO3C017764.2 Cucumis melo HOM05D003418 ORTHO05D004105 2.1e-09 66.2 107 44.9
Gohir.D12G153300 Gossypium hirsutum HOM05D003418 ORTHO05D004105 2.1e-09 66.2 107 44.9
C03p73650 Brassica napus HOM05D003418 ORTHO05D004105 2.7e-09 65.9 108 39.8
Thhalv10009048m.g Eutrema salsugineum HOM05D003418 ORTHO05D004105 2.7e-09 65.9 115 40.0
Gorai.008G165800 Gossypium raimondii HOM05D003418 ORTHO05D004105 2.7e-09 65.9 107 44.9
Nitab4.5_0000340g0030 Nicotiana tabacum HOM05D003418 ORTHO05D004105 2.7e-09 65.9 105 45.7
Psat5g098080 Pisum sativum HOM05D003418 ORTHO05D004105 2.7e-09 65.9 99 46.5
Aqoxy3G01580 Aquilegia oxysepala HOM05D003418 ORTHO05D004105 3.6e-09 65.5 124 42.7
BraA07t28984Z Brassica rapa HOM05D003418 ORTHO05D004105 3.6e-09 65.5 111 39.6
Gohir.A12G149400 Gossypium hirsutum HOM05D003418 ORTHO05D004105 3.6e-09 65.5 107 44.9
Potri.001G058100 Populus trichocarpa HOM05D003418 ORTHO05D004105 3.6e-09 65.5 108 41.7
Sopen05g011160 Solanum pennellii HOM05D003418 ORTHO05D004105 3.6e-09 65.5 112 42.0
CDE02G2290 Ceratophyllum demersum HOM05D003418 ORTHO05D004105 4.7e-09 65.1 146 34.2
PSO478G1430 Papaver somniferum HOM05D003418 ORTHO05D004105 4.7e-09 65.1 119 42.9
PGSC0003DMG401021901 Solanum tuberosum HOM05D003418 ORTHO05D004105 4.7e-09 65.1 108 42.6
C05p25990 Brassica napus HOM05D003418 ORTHO05D004105 6.1e-09 64.7 109 41.3
unitig_8.g3133 Utricularia gibba HOM05D003418 ORTHO05D004105 6.1e-09 64.7 106 41.5
C07p17920 Brassica napus HOM05D003418 ORTHO05D004105 8.0e-09 64.3 111 38.7
MBI07_g11273_MAGBIO Magnolia biondii HOM05D003418 ORTHO05D004105 8.0e-09 64.3 105 44.8
PSO017G5034 Papaver somniferum HOM05D003418 ORTHO05D004105 8.0e-09 64.3 119 42.0
Manes.12G009300 Manihot esculenta HOM05D003418 ORTHO05D004105 1.0e-08 63.9 110 40.9
Medtr8g097040 Medicago truncatula HOM05D003418 ORTHO05D004105 1.0e-08 63.9 120 40.8
Oeu049146.3 Olea europaea HOM05D003418 ORTHO05D004105 1.4e-08 63.5 117 41.0
Sabra01G0041900 Salix brachista HOM05D003418 ORTHO05D004105 1.4e-08 63.5 108 40.7
Thecc.02G204700 Theobroma cacao HOM05D003418 ORTHO05D004105 1.4e-08 63.5 107 44.9
Actinidia09637 Actinidia chinensis HOM05D003418 ORTHO05D004105 1.8e-08 63.2 125 44.0
CDE06G2031 Ceratophyllum demersum HOM05D003325 ORTHO05D003852 1.8e-08 63.2 145 34.5
PSO017G5305 Papaver somniferum HOM05D003418 ORTHO05D004105 1.8e-08 63.2 104 46.2
Rhsim12G0093300 Rhododendron simsii HOM05D003418 ORTHO05D004105 1.8e-08 63.2 104 47.1
BcaB03g12071 Brassica carinata HOM05D003418 ORTHO05D004105 2.3e-08 62.8 111 39.6
Oeu004464.1 Olea europaea HOM05D003418 ORTHO05D004105 2.3e-08 62.8 119 43.7
Lsat_1_v5_gn_2_93281 Lactuca sativa HOM05D003418 ORTHO05D004105 3.0e-08 62.4 113 41.6
Gohir.A03G125000 Gossypium hirsutum HOM05D003418 ORTHO05D004105 5.2e-08 61.6 107 42.1
Gorai.005G165100 Gossypium raimondii HOM05D003418 ORTHO05D004105 5.2e-08 61.6 105 42.9
Lj4g0014081 Lotus japonicus HOM05D003418 ORTHO05D004105 6.7e-08 61.2 110 39.1
CANSAT64G1003 Cannabis sativa HOM05D003418 ORTHO05D004105 8.8e-08 60.8 128 43.0
Eucgr.H04620 Eucalyptus grandis HOM05D003418 ORTHO05D004105 8.8e-08 60.8 111 41.4
Sed0026789 Sechium edule HOM05D003418 ORTHO05D004105 8.8e-08 60.8 103 40.8
Hma1.2p1_1057F.1_g252730 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 1.2e-07 60.5 65 53.8
Lalb_Chr23g0278191 Lupinus albus HOM05D003418 ORTHO05D004105 1.2e-07 60.5 97 39.2
Peaxi162Scf00518g00025 Petunia axillaris HOM05D003418 ORTHO05D004105 1.2e-07 60.5 122 36.9
Atru.chr11.2346 Acer truncatum HOM05D003418 ORTHO05D004105 1.5e-07 60.1 113 38.9
Migut.K00956 Erythranthe guttata HOM05D003418 ORTHO05D004105 1.5e-07 60.1 105 38.1
Nitab4.5_0005872g0010 Nicotiana tabacum HOM05D003418 ORTHO05D004105 1.5e-07 60.1 105 41.9
SHI04041 Sapria himalayana HOM05D000704 ORTHO05D000526 2.0e-07 59.7 108 42.6
Sed0009671 Sechium edule HOM05D003418 ORTHO05D004105 2.0e-07 59.7 106 37.7
SalBow2G0507 Salvia bowleyana HOM05D003418 ORTHO05D004105 2.6e-07 59.3 105 41.0
Duzib248G1492 Durio zibethinus HOM05D003418 ORTHO05D004105 4.4e-07 58.5 108 40.7
HPP92_025259 Vanilla planifolia HOM05D003418 ORTHO05D004105 4.4e-07 58.5 111 38.7
Lalb_Chr07g0187041 Lupinus albus HOM05D003418 ORTHO05D004105 5.7e-07 58.2 119 40.3
Hund25475 Selenicereus undatus HOM05D003418 ORTHO05D004105 5.7e-07 58.2 109 40.4
CSS0019501 Camellia sinensis var. sinensis HOM05D003418 ORTHO05D004105 1.7e-06 56.6 121 38.0
Nitab4.5_0012747g0020 Nicotiana tabacum HOM05D003418 ORTHO05D004105 1.7e-06 56.6 90 44.4
Cpa.g.sc171.2 Carica papaya HOM05D003418 ORTHO05D004105 2.2e-06 56.2 123 39.0
Gohir.A01G154140 Gossypium hirsutum HOM05D003418 ORTHO05D004105 2.8e-06 55.8 107 37.4
Gorai.002G181900 Gossypium raimondii HOM05D003418 ORTHO05D004105 2.8e-06 55.8 112 37.5
Gohir.D01G146200 Gossypium hirsutum HOM05D003418 ORTHO05D004105 3.7e-06 55.5 112 37.5
Gohir.D05G311100 Gossypium hirsutum HOM05D003418 ORTHO05D004105 3.7e-06 55.5 105 37.1
Gohir.D02G147400 Gossypium hirsutum HOM05D003418 ORTHO05D004105 4.8e-06 55.1 105 41.0
Sopen04g016940 Solanum pennellii HOM05D003418 ORTHO05D004105 6.3e-06 54.7 77 45.5
Gorai.009G332100 Gossypium raimondii HOM05D003418 ORTHO05D004105 8.2e-06 54.3 105 36.2


User provided reference genes

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