Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 0.0e+00 1265.4 671 100.0
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 5.1e-221 771.5 733 58.0
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 3.2e-207 725.7 747 53.8
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 4.8e-203 711.8 803 52.4
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 4.8e-203 711.8 693 57.1
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 4.5e-201 705.3 749 53.4
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 1.6e-198 696.8 751 53.0
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 5.2e-197 691.8 771 51.9
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 2.6e-196 689.5 748 52.8
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 9.1e-194 681.0 810 50.7
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 7.7e-193 677.9 675 54.8
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 3.8e-192 675.6 752 52.8
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 5.0e-192 675.2 755 52.2
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 4.7e-190 668.7 742 53.0
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 1.4e-189 667.2 700 52.9
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 1.5e-188 663.7 709 53.3
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 5.7e-188 661.8 726 52.8
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 1.3e-187 660.6 654 56.3
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 3.7e-187 659.1 755 51.8
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 5.4e-186 655.2 744 52.0
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 9.2e-186 654.4 776 50.6
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 1.6e-185 653.7 746 51.9
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 1.0e-184 651.0 747 51.0
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 2.9e-184 649.4 744 51.5
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 6.6e-184 648.3 757 51.7
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 5.6e-183 645.2 687 52.7
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 2.8e-182 642.9 691 53.5
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 3.6e-182 642.5 773 49.2
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 2.3e-181 639.8 784 49.7
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 8.9e-181 637.9 680 53.2
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 1.2e-180 637.5 773 48.8
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 2.6e-180 636.3 666 54.2
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 3.4e-180 636.0 756 50.1
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 3.7e-179 632.5 571 59.7
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 1.1e-178 630.9 730 52.6
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 3.2e-178 629.4 639 56.0
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 1.2e-177 627.5 705 51.3
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 1.6e-177 627.1 686 52.2
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 3.5e-177 625.9 632 53.8
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 1.0e-176 624.4 751 51.1
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 8.6e-176 621.3 589 57.6
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 1.5e-175 620.5 756 50.0
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 9.5e-175 617.8 723 50.6
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 9.5e-175 617.8 747 50.3
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 2.8e-174 616.3 752 50.5
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 2.3e-173 613.2 692 51.3
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 4.4e-172 609.0 756 49.2
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 1.7e-171 607.1 763 47.2
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 4.9e-171 605.5 765 49.0
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 2.7e-169 599.7 760 48.0
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 1.3e-168 597.4 736 49.5
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 5.1e-168 595.5 760 47.4
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 1.5e-167 594.0 690 49.1
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 1.9e-167 593.6 741 48.0
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 1.6e-166 590.5 741 49.4
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 1.6e-166 590.5 704 50.4
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 2.8e-166 589.7 571 55.2
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 4.7e-166 589.0 779 47.1
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 1.4e-165 587.4 701 47.9
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 3.1e-165 586.3 772 47.0
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 4.0e-165 585.9 620 51.3
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 8.9e-165 584.7 676 49.0
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.5e-164 583.9 652 52.1
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 1.5e-164 583.9 744 48.4
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 2.0e-164 583.6 617 50.9
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 1.4e-162 577.4 654 49.5
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 2.4e-162 576.6 732 48.4
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 2.1e-161 573.5 640 52.5
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 6.0e-161 572.0 809 44.9
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 1.3e-160 570.9 759 46.5
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 1.7e-160 570.5 708 47.2
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 3.9e-160 569.3 766 47.3
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 5.6e-159 565.5 777 46.5
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 1.2e-158 564.3 777 46.3
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 2.8e-158 563.1 706 47.2
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 3.6e-158 562.8 630 50.0
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 3.6e-158 562.8 739 47.9
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 8.1e-158 561.6 754 46.3
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 1.1e-157 561.2 707 47.4
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 1.8e-157 560.5 754 46.4
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 9.9e-156 554.7 765 46.0
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 1.1e-154 551.2 761 45.9
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 1.9e-154 550.4 434 63.8
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 9.2e-154 548.1 654 49.1
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 1.2e-153 547.7 675 48.4
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 1.6e-153 547.4 761 45.9
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 1.1e-149 534.6 686 44.2
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 6.4e-147 525.4 752 46.0
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 1.9e-146 523.9 801 43.4
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 3.1e-141 506.5 627 47.4
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 5.4e-138 495.7 751 43.0
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 1.9e-130 470.7 419 59.4
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 3.8e-123 446.4 688 41.0
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 1.2e-121 441.4 483 50.5
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 5.9e-116 422.5 475 49.7
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 1.9e-114 417.5 590 44.9
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 2.5e-114 417.2 482 50.2
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 2.2e-110 404.1 657 40.9
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 2.3e-104 384.0 574 41.8
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 5.1e-104 382.9 674 36.2
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 3.1e-101 373.6 747 35.5
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 2.3e-96 357.5 756 35.4
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 2.2e-94 350.9 407 45.9
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 1.7e-83 314.7 426 45.8
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 2.8e-73 280.8 750 29.6
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 1.3e-67 261.9 323 48.6
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 1.9e-61 241.5 384 42.4
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 7.8e-60 236.1 749 30.4
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 3.2e-45 187.6 318 41.5
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 2.7e-44 184.5 225 50.7
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 2.4e-40 171.4 233 43.3
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 4.9e-30 137.1 189 42.3
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 6.4e-30 136.7 713 22.4
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 8.4e-30 136.3 143 56.6
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 3.5e-28 131.0 625 24.0
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 8.7e-27 126.3 196 43.4
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 2.6e-23 114.8 241 40.2
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 1.2e-20 105.9 303 29.7
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 2.7e-20 104.8 144 49.3
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 2.7e-20 104.8 140 41.4
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 4.3e-18 97.4 105 57.1
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 2.0e-15 88.6 76 63.2
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 1.4e-13 82.4 174 31.0
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 2.7e-12 78.2 89 48.3
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 1.3e-11 75.9 98 50.0
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 4.3e-10 70.9 118 42.4
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 1.5e-07 62.4 99 43.4
Dinv04312 Davidia involucrata HOM05D000114 ORTHO05D000075 3.8e-06 57.8 97 29.9
Nitab4.5_0004411g0010 Nicotiana tabacum HOM05D000463 ORTHO05D001294 3.8e-06 57.8 66 36.4
Solyc02g078320.3 Solanum lycopersicum HOM05D000463 ORTHO05D001294 5.0e-06 57.4 66 37.9
VMungo0540G1060 Vigna mungo HOM05D000463 ORTHO05D001294 5.0e-06 57.4 75 32.0
A09p02800 Brassica napus HOM05D000463 ORTHO05D001294 6.5e-06 57.0 67 38.8
Sopen02g023160 Solanum pennellii HOM05D000463 ORTHO05D001294 6.5e-06 57.0 66 36.4
PGSC0003DMG400029719 Solanum tuberosum HOM05D000463 ORTHO05D001294 6.5e-06 57.0 66 36.4
Nitab4.5_0002158g0130 Nicotiana tabacum HOM05D000463 ORTHO05D001294 8.4e-06 56.6 67 34.3


User provided reference genes

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