Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 0.0e+00 2271.5 1144 100.0
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 6.8e-274 948.0 1157 45.5
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 8.9e-274 947.6 1155 45.5
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 3.5e-270 935.6 1159 45.9
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 1.9e-263 913.3 1166 44.7
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 1.2e-262 910.6 1166 44.5
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 4.3e-260 902.1 1166 45.1
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 9.6e-260 901.0 1167 45.5
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 1.8e-253 880.2 1170 44.4
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 6.2e-251 871.7 1161 44.2
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 6.0e-246 855.1 1166 42.6
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 4.3e-244 849.0 1162 42.5
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 2.8e-243 846.3 1153 42.7
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 1.1e-242 844.3 1160 42.7
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 2.6e-233 813.1 1167 41.4
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 5.0e-232 808.9 1160 42.0
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 4.1e-226 789.3 1149 41.7
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 1.0e-224 784.6 1166 40.4
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 9.4e-223 778.1 1164 40.6
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 3.9e-221 772.7 1160 40.9
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 4.4e-220 769.2 1197 39.9
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 6.3e-219 765.4 1195 40.1
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 1.0e-216 758.1 1167 40.1
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 2.9e-216 756.5 1156 40.3
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 8.5e-216 755.0 1165 40.4
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 1.1e-215 754.6 1163 40.5
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 9.4e-215 751.5 1167 39.6
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 1.2e-214 751.1 1166 40.4
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 8.8e-213 745.0 1177 39.6
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 1.5e-212 744.2 1157 40.2
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 2.0e-212 743.8 1183 39.9
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 1.7e-211 740.7 1198 39.6
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.2e-209 734.6 1165 39.7
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 3.5e-209 733.0 1168 38.7
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 1.3e-208 731.1 1101 40.2
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 4.2e-207 726.1 981 44.0
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 1.2e-204 718.0 1168 39.3
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 2.8e-203 713.4 1157 38.5
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 5.0e-200 702.6 1093 40.8
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 5.5e-199 699.1 1159 38.1
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 1.2e-198 698.0 1159 38.1
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 6.1e-198 695.7 1162 37.4
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 4.0e-197 693.0 1159 38.6
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 2.6e-196 690.3 1262 36.9
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 7.5e-196 688.7 1158 37.8
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 4.8e-195 686.0 1162 38.7
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.8e-194 684.1 1155 38.8
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 1.8e-194 684.1 1180 36.1
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 1.8e-194 684.1 1175 38.5
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 2.4e-194 683.7 1156 37.6
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 3.1e-194 683.3 1181 38.1
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 1.2e-193 681.4 1155 37.2
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 7.7e-193 678.7 1181 37.9
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 7.7e-193 678.7 1181 37.9
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 3.8e-192 676.4 1168 37.5
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 5.0e-192 676.0 1159 36.9
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 5.0e-192 676.0 1161 37.0
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 6.5e-192 675.6 1169 37.2
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 8.6e-192 675.2 1170 38.0
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 1.5e-191 674.5 1151 36.8
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 1.5e-191 674.5 1182 37.6
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 2.5e-191 673.7 1159 37.8
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 1.2e-190 671.4 1157 36.9
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 8.8e-189 665.2 1176 36.4
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 3.1e-186 656.8 1161 36.3
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 5.9e-185 652.5 1159 35.4
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 5.9e-185 652.5 1164 36.8
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.9e-184 650.2 1176 36.1
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 2.9e-184 650.2 1159 36.7
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 3.0e-181 640.2 940 40.5
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 4.4e-180 636.3 1177 36.2
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 5.7e-180 636.0 1168 36.3
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 2.9e-179 633.6 990 39.7
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 6.4e-179 632.5 1188 35.5
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 8.3e-179 632.1 1033 39.2
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 8.3e-171 605.5 1168 33.9
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 1.1e-170 605.1 906 38.2
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 1.9e-170 604.4 1156 34.9
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 3.2e-170 603.6 1174 34.8
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 1.0e-168 598.6 1168 35.1
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 4.7e-166 589.7 1174 33.6
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 1.2e-164 585.1 1181 33.6
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 7.6e-156 555.8 1214 33.8
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 2.9e-155 553.9 1151 34.2
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 2.8e-150 537.3 1151 32.5
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 3.6e-150 537.0 1166 33.2
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 2.1e-145 521.2 1105 32.9
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 6.0e-145 519.6 1207 31.9
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 6.9e-141 506.1 956 34.5
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 4.2e-138 496.9 993 34.9
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 3.2e-130 470.7 1258 28.3
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 4.8e-126 456.8 1247 28.3
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 9.0e-125 452.6 654 39.6
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 1.5e-124 451.8 892 34.5
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 2.9e-107 394.4 895 31.5
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 1.1e-98 365.9 891 31.1
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 1.6e-84 318.9 805 31.3
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 2.7e-84 318.2 430 45.3
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 1.8e-80 305.4 1267 24.5
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 2.7e-76 291.6 313 51.1
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 2.5e-74 285.0 425 39.1
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 7.2e-74 283.5 304 51.0
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 2.8e-73 281.6 304 52.0
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 2.8e-73 281.6 304 51.6
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 8.0e-73 280.0 304 51.0
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 6.8e-72 276.9 304 51.0
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 1.4e-69 269.2 1276 23.8
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 1.9e-66 258.8 276 52.2
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 3.1e-64 251.5 311 46.0
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 1.7e-62 245.7 311 45.0
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 3.2e-61 241.5 304 46.4
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 6.6e-59 233.8 239 53.1
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 2.8e-57 228.4 1118 25.1
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 4.7e-57 227.6 412 35.0
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 5.8e-55 220.7 177 68.4
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 7.5e-55 220.3 360 39.4
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 1.0e-51 209.9 296 40.5
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 2.3e-51 208.8 239 47.3
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 2.0e-47 195.7 197 57.4
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 3.5e-44 184.9 189 54.0
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 4.6e-44 184.5 178 56.7
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 2.3e-43 182.2 177 54.8
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 3.0e-43 181.8 864 25.5
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.6e-41 176.0 177 55.4
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 5.8e-39 167.5 172 57.0
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 1.4e-32 146.4 361 29.9
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 2.7e-28 132.1 237 35.9
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 3.5e-28 131.7 129 52.7
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 9.6e-26 123.6 320 28.8
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 8.1e-25 120.6 303 29.4
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 4.0e-24 118.2 494 24.9
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 3.4e-23 115.2 226 32.3
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 3.2e-21 108.6 440 27.7
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 1.1e-16 93.6 108 46.3
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.1e-13 83.6 211 28.4
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.6e-12 79.7 106 48.1
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 3.9e-11 75.1 108 44.4
C03p82750 Brassica napus HOM05D000005 ORTHO05D000449 1.1e-10 73.6 79 48.1
BolC3t20557H Brassica oleracea HOM05D000005 ORTHO05D000449 1.9e-10 72.8 78 48.7
SHI28140 Sapria himalayana HOM05D004959 ORTHO05D005961 3.7e-09 68.6 64 56.2
BcaC01g00655 Brassica carinata HOM05D004959 ORTHO05D005961 5.3e-08 64.7 129 38.0
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 5.3e-08 64.7 89 47.2
Os01g0103700 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 9.0e-08 63.9 131 29.0
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 8.4e-06 57.4 43 60.5


User provided reference genes

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