Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01549 Eucalyptus grandis HOM05D006755 ORTHO05D008472 6.1e-125 451.4 350 100.0
PGR142G2394 Punica granatum HOM05D006755 ORTHO05D008472 4.1e-60 236.1 275 80.4
CANSAT25G1067 Cannabis sativa HOM05D006755 ORTHO05D008472 1.4e-41 174.5 351 60.4
CANSAT25G1651 Cannabis sativa HOM05D006755 ORTHO05D008472 1.4e-41 174.5 353 60.3
Oeu033356.1 Olea europaea HOM05D006755 ORTHO05D008472 1.4e-41 174.5 284 71.1
TAR376G0479 Trochodendron aralioides HOM05D006755 ORTHO05D008472 2.7e-40 170.2 241 80.5
Thecc.02G149300 Theobroma cacao HOM05D006755 ORTHO05D008472 6.1e-40 169.1 292 65.1
Manes.15G113000 Manihot esculenta HOM05D006755 ORTHO05D008472 2.3e-39 167.2 297 67.0
MSTRG.1737 Avicennia marina HOM05D006755 ORTHO05D008472 8.8e-39 165.2 273 70.0
Glyma.11G065700 Glycine max HOM05D006755 ORTHO05D008472 8.8e-39 165.2 239 72.4
Nitab4.5_0009982g0010 Nicotiana tabacum HOM05D006755 ORTHO05D008472 2.0e-38 164.1 290 68.6
Duzib052G1107 Durio zibethinus HOM05D006755 ORTHO05D008472 3.3e-38 163.3 290 65.9
Lj2g0006557 Lotus japonicus HOM05D006755 ORTHO05D008472 3.3e-38 163.3 308 62.0
Psat2g160920 Pisum sativum HOM05D006755 ORTHO05D008472 4.4e-38 162.9 265 69.1
Migut.E01827 Erythranthe guttata HOM05D006755 ORTHO05D008472 7.4e-38 162.2 279 67.4
Nitab4.5_0000943g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 7.4e-38 162.2 289 68.2
Peaxi162Scf00876g00046 Petunia axillaris HOM05D006755 ORTHO05D008472 7.4e-38 162.2 290 66.6
TPR.G18806 Trifolium pratense HOM05D006755 ORTHO05D008472 7.4e-38 162.2 258 71.3
Cc08_g09000 Coffea canephora HOM05D006755 ORTHO05D008472 9.7e-38 161.8 281 56.2
CAN.G947.37 Capsicum annuum HOM05D006755 ORTHO05D008472 1.3e-37 161.4 286 67.5
Ca_00389_v3 Cicer arietinum L. HOM05D006755 ORTHO05D008472 1.3e-37 161.4 275 69.8
Hma1.2p1_0052F.1_g030470 Hydrangea macrophylla HOM05D006755 ORTHO05D008472 1.7e-37 161.0 261 69.3
VMungo1215G0649 Vigna mungo HOM05D006755 ORTHO05D008472 2.8e-37 160.2 239 73.6
Aqoxy4G02640 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 4.8e-37 159.5 237 75.9
PGSC0003DMG400029290 Solanum tuberosum HOM05D006755 ORTHO05D008472 4.8e-37 159.5 303 63.4
Nitab4.5_0002859g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 6.3e-37 159.1 290 66.6
Solyc12g096140.3 Solanum lycopersicum HOM05D006755 ORTHO05D008472 8.2e-37 158.7 354 57.6
Glyma.01G176900 Glycine max HOM05D006755 ORTHO05D008472 1.1e-36 158.3 239 71.5
Phvul.002G027800 Phaseolus vulgaris HOM05D006755 ORTHO05D008472 1.8e-36 157.5 241 72.6
SGA_v2.0_scaffold21G09644 Striga asiatica HOM05D006755 ORTHO05D008472 2.4e-36 157.1 275 68.4
Medtr8g098445 Medicago truncatula HOM05D006755 ORTHO05D008472 5.3e-36 156.0 238 74.4
Nn6g31560 Nelumbo nucifera HOM05D006755 ORTHO05D008472 5.3e-36 156.0 262 70.6
Prupe.8G183200 Prunus persica HOM05D006755 ORTHO05D008472 9.1e-36 155.2 283 68.9
Sopen12g032020 Solanum pennellii HOM05D006755 ORTHO05D008472 1.2e-35 154.8 357 56.0
arahy.Tifrunner.gnm1.ann1.0IBU2N Arachis hypogaea HOM05D006755 ORTHO05D008472 1.6e-35 154.5 245 71.4
Rhsim12G0052500 Rhododendron simsii HOM05D006755 ORTHO05D008472 1.6e-35 154.5 290 65.9
Peaxi162Scf00193g00005 Petunia axillaris HOM05D006755 ORTHO05D008472 2.0e-35 154.1 290 66.6
arahy.Tifrunner.gnm1.ann1.HWJ5MG Arachis hypogaea HOM05D006755 ORTHO05D008472 2.6e-35 153.7 245 71.0
COL.COLO4_04807 Corchorus olitorius HOM05D006755 ORTHO05D008472 2.6e-35 153.7 285 63.5
Lalb_Chr09g0322551 Lupinus albus HOM05D006755 ORTHO05D008472 2.6e-35 153.7 255 67.8
Sp7g37600 Schrenkiella parvula HOM05D006755 ORTHO05D008472 4.5e-35 152.9 273 64.5
Aqoxy6G03058 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 7.7e-35 152.1 237 74.3
Gorai.013G065500 Gossypium raimondii HOM05D006755 ORTHO05D008472 1.3e-34 151.4 290 65.9
QL11p057006 Quercus lobata HOM05D006755 ORTHO05D008472 1.3e-34 151.4 274 60.9
CSS0044736 Camellia sinensis var. sinensis HOM05D006755 ORTHO05D008472 1.7e-34 151.0 230 77.8
Duzib132G0679 Durio zibethinus HOM05D006755 ORTHO05D008472 1.7e-34 151.0 293 62.8
Gohir.D13G058100 Gossypium hirsutum HOM05D006755 ORTHO05D008472 2.2e-34 150.6 240 75.0
Lj9P409T68 Lonicera japonica HOM05D006755 ORTHO05D008472 3.8e-34 149.8 275 68.0
EL10Ac9g21570 Beta vulgaris HOM05D006755 ORTHO05D008472 6.5e-34 149.1 234 73.1
Gohir.A13G063800 Gossypium hirsutum HOM05D006755 ORTHO05D008472 1.1e-33 148.3 290 50.0
ECA233G3571 Erigeron canadensis HOM05D006755 ORTHO05D008472 1.5e-33 147.9 232 68.1
Aa31LG6G16930 Aethionema arabicum HOM05D006755 ORTHO05D008472 1.9e-33 147.5 288 59.4
CDE04G3036 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 1.9e-33 147.5 231 75.8
Ciclev10028759m.g Citrus clementina HOM05D006755 ORTHO05D008472 1.9e-33 147.5 299 65.2
Dinv41852 Davidia involucrata HOM05D006755 ORTHO05D008472 1.9e-33 147.5 237 75.1
Carub.0007s0004 Capsella rubella HOM05D006755 ORTHO05D008472 2.5e-33 147.1 276 64.5
Lj2g0026453 Lotus japonicus HOM05D006755 ORTHO05D008472 2.5e-33 147.1 237 74.3
BcaC06g31423 Brassica carinata HOM05D006755 ORTHO05D008472 3.2e-33 146.7 274 60.6
HanXRQChr07g0186241 Helianthus annuus HOM05D006755 ORTHO05D008472 7.2e-33 145.6 237 66.2
Medtr5g019860 Medicago truncatula HOM05D006755 ORTHO05D008472 9.4e-33 145.2 231 73.2
AL7G10050 Arabidopsis lyrata HOM05D006755 ORTHO05D008472 1.2e-32 144.8 272 63.2
CiPaw.06G113100 Carya illinoinensis HOM05D006755 ORTHO05D008472 2.7e-32 143.7 274 61.3
DCAR_025005 Daucus carota HOM05D006755 ORTHO05D008472 3.6e-32 143.3 297 63.0
MD05G1145100 Malus domestica HOM05D006755 ORTHO05D008472 3.6e-32 143.3 284 66.2
Nitab4.5_0001968g0030 Nicotiana tabacum HOM05D006755 ORTHO05D008472 3.6e-32 143.3 232 75.9
CARHR293910 Cardamine hirsuta HOM05D006755 ORTHO05D008472 4.7e-32 142.9 266 64.7
Thhalv10005467m.g Eutrema salsugineum HOM05D006755 ORTHO05D008472 4.7e-32 142.9 266 66.2
CDE02G4616 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 6.1e-32 142.5 285 61.4
PSO541G3341 Papaver somniferum HOM05D006755 ORTHO05D008472 6.1e-32 142.5 273 48.7
THA.LOC104823440 Tarenaya hassleriana HOM05D006755 ORTHO05D008472 1.0e-31 141.7 273 61.5
BraA06t27405Z Brassica rapa HOM05D006755 ORTHO05D008472 4.0e-31 139.8 273 64.1
BcaC06g34295 Brassica carinata HOM05D006755 ORTHO05D008472 5.2e-31 139.4 274 66.8
BolC7t43606H Brassica oleracea HOM05D006755 ORTHO05D008472 6.8e-31 139.0 274 66.1
HPP92_025325 Vanilla planifolia HOM05D006755 ORTHO05D008472 8.8e-31 138.7 189 87.3
A06p45360 Brassica napus HOM05D006755 ORTHO05D008472 1.2e-30 138.3 273 63.7
TWI75G0077 Tripterygium wilfordii HOM05D006755 ORTHO05D008472 1.2e-30 138.3 292 62.3
SHI05798 Sapria himalayana HOM05D006755 ORTHO05D008472 2.0e-30 137.5 197 75.6
vmacro08131 Vaccinium macrocarpon HOM05D006755 ORTHO05D008472 2.0e-30 137.5 187 85.0
C07p30650 Brassica napus HOM05D006755 ORTHO05D008472 2.6e-30 137.1 274 66.1
Lsat_1_v5_gn_6_28960 Lactuca sativa HOM05D006755 ORTHO05D008472 2.6e-30 137.1 236 71.2
Sc18g0006850 Simmondsia chinensis HOM05D006755 ORTHO05D008472 3.4e-30 136.7 233 74.7
PSO675G0405 Papaver somniferum HOM05D006755 ORTHO05D008472 9.7e-30 135.2 259 49.0
Sed0010179 Sechium edule HOM05D006755 ORTHO05D008472 1.7e-29 134.4 244 69.3
Os01g0546500 Oryza sativa ssp. japonica HOM05D006755 ORTHO05D008472 4.8e-29 132.9 242 68.2
CsaV3_7G002250 Cucumis sativus L. HOM05D006755 ORTHO05D008472 6.3e-29 132.5 236 71.2
AUR62010217 Chenopodium quinoa HOM05D006755 ORTHO05D008472 8.3e-29 132.1 252 69.0
Sabra04G0141300 Salix brachista HOM05D006755 ORTHO05D008472 1.1e-28 131.7 242 67.4
HPP92_007220 Vanilla planifolia HOM05D006755 ORTHO05D008472 1.8e-28 131.0 189 82.0
Actinidia26119 Actinidia chinensis HOM05D006755 ORTHO05D008472 3.1e-28 130.2 189 79.4
AT4G38150 Arabidopsis thaliana HOM05D006755 ORTHO05D008472 9.1e-28 128.6 146 56.2
Ah.01g010520 Amaranthus hybridus HOM05D006755 ORTHO05D008472 2.0e-27 127.5 235 71.1
MELO3C024165.2 Cucumis melo HOM05D006755 ORTHO05D008472 2.0e-27 127.5 249 67.1
Zm00001eb342190 Zea mays HOM05D006755 ORTHO05D008472 2.0e-27 127.5 273 58.2
Potri.004G209500 Populus trichocarpa HOM05D006755 ORTHO05D008472 2.7e-27 127.1 239 66.5
Cfa005407 Carpinus fangiana HOM05D006755 ORTHO05D008472 5.9e-27 125.9 305 54.8
FvH4_2g17180 Fragaria vesca HOM05D006755 ORTHO05D008472 9.4e-25 118.6 289 63.3
RcHm_v2.0_Chr6g0281671 Rosa chinensis HOM05D006755 ORTHO05D008472 1.2e-24 118.2 282 63.5
AUR62013213 Chenopodium quinoa HOM05D006755 ORTHO05D008472 1.6e-24 117.9 231 69.3
FAN15G2937 Fragaria x ananassa HOM05D006755 ORTHO05D008472 1.6e-24 117.9 292 62.7
Nn3g19301 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.6e-24 117.9 132 55.3
FAN27G0618 Fragaria x ananassa HOM05D006755 ORTHO05D008472 3.0e-23 113.6 289 63.0
Nn1g06229 Nelumbo nucifera HOM05D006755 ORTHO05D008472 2.0e-22 110.9 113 56.6
Actinidia20592 Actinidia chinensis HOM05D006755 ORTHO05D008472 3.4e-22 110.2 58 91.4
ATR0605G371 Amborella trichopoda HOM05D006755 ORTHO05D008472 5.7e-22 109.4 141 50.4
ClCG02G003160 Citrullus lanatus HOM05D006755 ORTHO05D008472 5.7e-22 109.4 266 61.7
Haze_01948 Corylus avellana HOM05D006755 ORTHO05D008472 7.5e-22 109.0 176 43.2
SalBow1G4250 Salvia bowleyana HOM05D006755 ORTHO05D008472 2.2e-21 107.5 271 44.6
GSVIVG01023844001 Vitis vinifera HOM05D006755 ORTHO05D008472 3.7e-21 106.7 294 32.0
MBI01_g31986_MAGBIO Magnolia biondii HOM05D006755 ORTHO05D008472 4.1e-20 103.2 242 64.9
Hund00104 Selenicereus undatus HOM05D006755 ORTHO05D001720 1.2e-19 101.7 119 52.1
Ah.01g017780 Amaranthus hybridus HOM05D006755 ORTHO05D008472 3.5e-19 100.1 231 68.4
Sed0025141 Sechium edule HOM05D006755 ORTHO05D008472 7.7e-19 99.0 106 51.9
Nn6g31556 Nelumbo nucifera HOM05D006755 ORTHO05D008472 6.6e-18 95.9 173 57.8
SEGI_20822 Sequoiadendron giganteum HOM05D006755 ORTHO05D008472 3.3e-17 93.6 216 69.4
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 2.4e-12 77.4 63 54.0
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 9.2e-12 75.5 62 54.8
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 9.2e-12 75.5 63 54.0
Lj6P318T4 Lonicera japonica HOM05D006755 ORTHO05D008472 1.6e-11 74.7 37 97.3
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 3.9e-10 70.1 64 53.1
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 3.9e-10 70.1 64 53.1
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 8.6e-10 68.9 63 50.8
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.9e-09 67.8 62 51.6
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 1.9e-09 67.8 62 53.2
PGSC0003DMG400018230 Solanum tuberosum HOM05D002804 ORTHO05D003755 4.3e-09 66.6 63 46.0
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 7.3e-09 65.9 123 35.8
MD05G1145400 Malus domestica HOM05D006755 ORTHO05D008472 1.2e-08 65.1 148 83.8
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 1.2e-08 65.1 63 44.4
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 2.1e-08 64.3 63 46.0
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 2.1e-08 64.3 62 48.4
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 2.8e-08 63.9 63 46.0
Nn5g27110 Nelumbo nucifera HOM05D006755 ORTHO05D008472 2.8e-08 63.9 146 76.0
Oeu053880.1 Olea europaea HOM05D043847 ORTHO05D008472 2.8e-08 63.9 46 69.6
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 6.1e-08 62.8 62 46.8
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 6.1e-08 62.8 62 46.8
Peaxi162Scf00194g00625 Petunia axillaris HOM05D002804 ORTHO05D003755 6.1e-08 62.8 63 44.4
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 6.1e-08 62.8 63 44.4
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 1.4e-07 61.6 104 33.7
PGR119G1767 Punica granatum HOM05D002804 ORTHO05D003755 1.8e-07 61.2 63 44.4
Lsat_1_v5_gn_9_84161 Lactuca sativa HOM05D002804 ORTHO05D003755 3.1e-07 60.5 110 32.7
Lj5g0005878 Lotus japonicus HOM05D002804 ORTHO05D003755 3.1e-07 60.5 63 47.6
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 6.8e-07 59.3 144 32.6
Gohir.A09G116900 Gossypium hirsutum HOM05D002804 ORTHO05D003755 6.8e-07 59.3 59 44.1
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 8.9e-07 58.9 49 51.0
VMungo0720G2485 Vigna mungo HOM05D002804 ORTHO05D003755 1.2e-06 58.5 63 44.4
Lalb_Chr02g0147321 Lupinus albus HOM05D002804 ORTHO05D003755 2.6e-06 57.4 64 42.2


User provided reference genes

Program Settings