Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01542 Eucalyptus grandis HOM05D008002 ORTHO05D010148 1.4e-116 422.9 206 100.0
MD05G1143100 Malus domestica HOM05D008002 ORTHO05D010148 1.0e-66 257.3 212 65.6
MD10G1142900 Malus domestica HOM05D008002 ORTHO05D010148 1.1e-65 253.8 216 63.4
Prupe.8G181900 Prunus persica HOM05D008002 ORTHO05D010148 1.1e-65 253.8 212 63.7
Thecc.02G147800 Theobroma cacao HOM05D008002 ORTHO05D010148 1.1e-65 253.8 219 61.2
PGR142G3621 Punica granatum HOM05D008002 ORTHO05D010148 4.2e-65 251.9 217 64.1
FvH4_2g17020 Fragaria vesca HOM05D008002 ORTHO05D010148 1.0e-63 247.3 213 62.4
RcHm_v2.0_Chr6g0281201 Rosa chinensis HOM05D008002 ORTHO05D010148 1.0e-63 247.3 219 62.1
FAN15G1289 Fragaria x ananassa HOM05D008002 ORTHO05D010148 1.4e-63 246.9 213 62.0
FAN27G2383 Fragaria x ananassa HOM05D008002 ORTHO05D010148 1.4e-63 246.9 213 62.4
FAN24G1487 Fragaria x ananassa HOM05D008002 ORTHO05D010148 3.9e-63 245.4 210 62.9
Duzib132G1147 Durio zibethinus HOM05D008002 ORTHO05D010148 2.6e-62 242.7 219 58.9
CANSAT25G0111 Cannabis sativa HOM05D008002 ORTHO05D010148 1.7e-61 240.0 209 61.7
QL11p056798 Quercus lobata HOM05D000114 ORTHO05D009898 1.7e-61 240.0 232 57.8
Duzib248G0441 Durio zibethinus HOM05D008002 ORTHO05D010148 6.9e-60 234.6 218 57.8
Gohir.D02G193300 Gossypium hirsutum HOM05D008002 ORTHO05D010148 9.1e-60 234.2 219 57.5
Hund00100 Selenicereus undatus HOM05D008002 ORTHO05D010148 9.1e-60 234.2 209 61.2
Gohir.A03G170200 Gossypium hirsutum HOM05D008002 ORTHO05D010148 1.2e-59 233.8 220 57.3
Potri.009G169400 Populus trichocarpa HOM05D008002 ORTHO05D010148 1.5e-59 233.4 208 60.1
Gorai.005G216100 Gossypium raimondii HOM05D008002 ORTHO05D010148 3.4e-59 232.3 220 56.8
Potri.004G208200 Populus trichocarpa HOM05D008002 ORTHO05D010148 1.0e-58 230.7 208 58.7
Gohir.A04G111300 Gossypium hirsutum HOM05D008002 ORTHO05D010148 6.5e-58 228.0 220 57.7
Gorai.012G138300 Gossypium raimondii HOM05D008002 ORTHO05D010148 6.5e-58 228.0 220 57.7
Sabra04G0140100 Salix brachista HOM05D008002 ORTHO05D010148 1.4e-57 226.9 207 59.9
COL.COLO4_03847 Corchorus olitorius HOM05D008002 ORTHO05D010148 4.2e-57 225.3 219 57.5
Gohir.D04G151600 Gossypium hirsutum HOM05D008002 ORTHO05D010148 5.5e-57 224.9 220 57.3
Actinidia17988 Actinidia chinensis HOM05D008002 ORTHO05D010148 1.0e-55 220.7 207 58.5
CiPaw.05G094700 Carya illinoinensis HOM05D008002 ORTHO05D010148 1.8e-55 219.9 192 60.4
Dinv14183 Davidia involucrata HOM05D008002 ORTHO05D010148 5.2e-55 218.4 211 57.3
TAR376G1088 Trochodendron aralioides HOM05D008002 ORTHO05D010148 6.7e-55 218.0 203 56.7
Haze_01959 Corylus avellana HOM05D008002 ORTHO05D010148 8.8e-55 217.6 207 57.5
Nn2g12628 Nelumbo nucifera HOM05D008002 ORTHO05D010148 3.3e-54 215.7 213 55.9
Actinidia20583 Actinidia chinensis HOM05D008002 ORTHO05D010148 7.4e-54 214.5 207 58.9
Atru.chr5.3576 Acer truncatum HOM05D008002 ORTHO05D010148 2.2e-53 213.0 208 54.8
Cfa005392 Carpinus fangiana HOM05D008002 ORTHO05D010148 1.4e-52 210.3 204 55.4
GSVIVG01023858001 Vitis vinifera HOM05D008002 ORTHO05D010148 4.5e-51 205.3 210 57.6
Nn8g40377 Nelumbo nucifera HOM05D008002 ORTHO05D010148 5.9e-51 204.9 212 54.7
TWI75G0824 Tripterygium wilfordii HOM05D008002 ORTHO05D010148 1.3e-50 203.8 214 53.3
Sc08g0002060 Simmondsia chinensis HOM05D008002 ORTHO05D010148 2.9e-50 202.6 207 55.1
Gohir.D13G057750 Gossypium hirsutum HOM05D008002 ORTHO05D010148 1.1e-49 200.7 218 54.1
Gorai.013G065000 Gossypium raimondii HOM05D008002 ORTHO05D010148 1.5e-49 200.3 218 54.1
CsaV3_7G002100 Cucumis sativus L. HOM05D008002 ORTHO05D010148 7.2e-49 198.0 207 52.7
Rhsim11G0198500 Rhododendron simsii HOM05D008002 ORTHO05D010148 1.6e-48 196.8 176 60.8
MELO3C015697.2 Cucumis melo HOM05D008002 ORTHO05D010148 4.7e-48 195.3 207 51.7
Ciclev10029829m.g Citrus clementina HOM05D008002 ORTHO05D010148 6.1e-48 194.9 207 53.1
CiPaw.06G114200 Carya illinoinensis HOM05D008002 ORTHO05D010148 1.0e-47 194.1 204 52.9
Eucgr.H05000 Eucalyptus grandis HOM05D008002 ORTHO05D010148 5.2e-47 191.8 199 50.3
Sed0014792 Sechium edule HOM05D008002 ORTHO05D010148 6.3e-45 184.9 147 63.9
Haze_01969 Corylus avellana HOM05D008002 ORTHO05D010148 1.8e-44 183.3 174 56.3
Oeu006116.1 Olea europaea HOM05D008002 ORTHO05D010148 7.7e-43 177.9 219 47.9
Lsat_1_v5_gn_3_48401 Lactuca sativa HOM05D008002 ORTHO05D010148 2.0e-38 163.3 151 56.3
AT4G38213 Arabidopsis thaliana HOM05D008002 ORTHO05D010148 1.3e-37 160.6 148 56.8
Thhalv10027398m.g Eutrema salsugineum HOM05D008002 ORTHO05D010148 6.3e-37 158.3 149 55.0
Carub.0007s0013 Capsella rubella HOM05D008002 ORTHO05D010148 4.1e-36 155.6 149 52.3
PSO541G1248 Papaver somniferum HOM05D008002 ORTHO05D010148 4.1e-36 155.6 164 51.8
Aqoxy6G02976 Aquilegia oxysepala HOM05D008002 ORTHO05D010148 2.3e-34 149.8 235 41.7
Sp7g37530 Schrenkiella parvula HOM05D008002 ORTHO05D010148 5.0e-34 148.7 140 55.0
ClCG02G003270 Citrullus lanatus HOM05D008002 ORTHO05D010148 5.5e-33 145.2 115 63.5
CSS0003373 Camellia sinensis var. sinensis HOM05D008002 ORTHO05D010148 2.3e-31 139.8 110 66.4
SEGI_35818 Sequoiadendron giganteum HOM05D008002 ORTHO05D010148 4.4e-30 135.6 139 50.4
Zm00001eb035270 Zea mays HOM05D008002 ORTHO05D010148 9.8e-30 134.4 163 48.5
Os08g0512100 Oryza sativa ssp. japonica HOM05D008002 ORTHO05D010148 2.7e-27 126.3 177 44.6
HanXRQChr15g0490081 Helianthus annuus HOM05D008002 ORTHO05D010148 8.6e-26 121.3 113 54.9
PSO675G9248 Papaver somniferum HOM05D008002 ORTHO05D010148 4.3e-25 119.0 127 51.2
AL7G10120 Arabidopsis lyrata HOM05D008002 ORTHO05D010148 5.6e-25 118.6 182 44.0
CDE10G0514 Ceratophyllum demersum HOM05D008002 ORTHO05D010148 2.3e-23 113.2 186 43.0
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 1.5e-22 110.5 100 58.0
MBI01_g17256_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 2.0e-22 110.2 87 65.5
HanXRQChr15g0479771 Helianthus annuus HOM05D008002 ORTHO05D010148 2.6e-22 109.8 111 52.3
HPP92_007470 Vanilla planifolia HOM05D008002 ORTHO05D010148 3.4e-22 109.4 222 34.2
ATR0763G180 Amborella trichopoda HOM05D008002 ORTHO05D010148 3.2e-20 102.8 107 53.3
TAR628G1479 Trochodendron aralioides HOM05D008002 ORTHO05D010148 7.8e-19 98.2 92 58.7
CARHR293990 Cardamine hirsuta HOM05D008002 ORTHO05D010148 3.0e-18 96.3 119 46.2
MBI12_g13710_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022477 4.7e-16 89.0 91 53.8
MBI03_g24838_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 1.4e-15 87.4 90 53.3
Gohir.A13G064166 Gossypium hirsutum HOM05D008002 ORTHO05D010148 1.8e-15 87.0 60 68.3
MBI18_g48147_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022477 8.9e-15 84.7 92 53.3
CDE10G0941 Ceratophyllum demersum HOM05D008002 ORTHO05D010148 9.8e-14 81.3 91 53.8
CSS0029866 Camellia sinensis var. sinensis HOM05D008403 ORTHO05D010317 1.7e-10 70.5 83 51.8


User provided reference genes

Program Settings