Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 7.1e-223 778.1 869 100.0
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 5.6e-103 379.8 875 77.5
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 4.5e-100 370.2 876 76.3
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 3.2e-98 364.0 866 73.0
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.1e-95 355.5 875 76.2
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 1.6e-94 351.7 873 75.7
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 5.9e-92 343.2 873 73.0
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 3.8e-91 340.5 871 71.1
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 3.8e-91 340.5 873 75.0
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 6.5e-91 339.7 874 74.8
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 8.4e-91 339.3 869 71.6
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 1.2e-89 335.5 872 74.7
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 2.1e-89 334.7 874 74.7
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 6.7e-88 329.7 875 74.9
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 8.7e-88 329.3 873 67.2
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 3.4e-84 317.4 865 74.6
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 1.0e-83 315.8 869 71.8
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 5.5e-82 310.1 869 67.8
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 3.6e-81 307.4 869 74.0
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 3.0e-80 304.3 871 72.9
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 5.7e-79 300.1 870 69.7
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 7.4e-79 299.7 874 62.5
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 1.3e-78 298.9 869 73.1
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 1.4e-77 295.4 874 71.1
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 3.4e-76 290.8 869 72.8
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 7.7e-76 289.7 872 69.5
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 8.5e-75 286.2 884 61.5
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 1.1e-71 275.8 861 65.6
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 2.0e-71 275.0 869 71.8
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 3.3e-71 274.2 872 70.5
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 1.7e-70 271.9 868 71.4
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 2.2e-70 271.6 872 70.8
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 2.4e-69 268.1 871 69.9
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 9.1e-69 266.2 872 64.7
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 7.7e-68 263.1 869 68.0
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 1.0e-67 262.7 869 68.1
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 2.2e-67 261.5 868 71.5
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 3.8e-67 260.8 873 61.5
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 1.2e-65 255.8 869 68.7
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 1.6e-65 255.4 869 67.8
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 2.1e-65 255.0 887 66.9
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 1.4e-64 252.3 866 70.6
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 2.0e-63 248.4 878 62.5
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 7.5e-63 246.5 878 66.3
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 7.5e-63 246.5 873 62.9
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 1.3e-62 245.7 882 60.4
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 1.7e-62 245.4 865 61.2
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 2.2e-62 245.0 872 69.4
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 6.3e-62 243.4 872 69.3
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 1.8e-61 241.9 801 72.7
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 2.4e-61 241.5 872 69.3
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 7.0e-61 240.0 869 61.8
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 7.0e-61 240.0 866 65.8
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 9.1e-61 239.6 781 77.2
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 1.2e-60 239.2 872 68.2
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 1.3e-59 235.7 869 69.2
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 1.9e-58 231.9 875 70.2
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 2.5e-58 231.5 868 68.7
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 3.2e-58 231.1 868 70.0
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 2.7e-57 228.0 866 66.2
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 3.0e-56 224.6 870 62.0
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 4.0e-56 224.2 872 61.9
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 4.0e-56 224.2 872 61.9
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 1.2e-55 222.6 870 70.1
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 7.5e-55 219.9 867 70.7
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 6.3e-54 216.9 867 66.8
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 1.4e-53 215.7 873 69.9
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 1.8e-53 215.3 860 64.2
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 7.0e-53 213.4 873 66.6
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 3.5e-52 211.1 870 70.0
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 1.7e-51 208.8 372 67.7
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 5.0e-51 207.2 438 54.8
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 1.9e-50 205.3 872 68.0
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 3.2e-50 204.5 365 68.2
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 6.1e-49 200.3 878 65.6
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.4e-48 199.1 193 53.4
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 1.8e-48 198.7 365 67.9
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 8.8e-48 196.4 877 69.2
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 2.0e-47 195.3 367 67.3
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 4.4e-47 194.1 834 68.6
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 2.4e-45 188.3 361 64.5
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 2.4e-45 188.3 834 68.6
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 2.3e-43 181.8 382 62.8
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 3.8e-43 181.0 192 51.0
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 8.6e-43 179.9 378 64.6
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 4.3e-42 177.6 379 63.6
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 5.2e-40 170.6 891 51.6
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 1.2e-39 169.5 366 64.2
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 1.2e-33 149.4 854 61.9
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 2.3e-32 145.2 743 73.9
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 8.9e-32 143.3 382 57.1
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 2.0e-31 142.1 178 40.4
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 4.4e-31 141.0 412 46.8
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 2.0e-28 132.1 333 30.6
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 1.0e-27 129.8 376 57.2
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 1.7e-27 129.0 880 54.8
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 4.3e-26 124.4 385 56.4
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 2.3e-24 118.6 147 43.5
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 1.1e-21 109.8 185 33.5
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 1.4e-21 109.4 67 73.1
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 1.9e-21 109.0 187 35.3
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 2.4e-21 108.6 93 55.9
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 6.6e-19 100.5 393 53.4
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 2.9e-14 85.1 144 36.1
THA.LOC104807397 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 2.9e-14 85.1 115 42.6
VMungo0251G1721 Vigna mungo HOM05D007101 ORTHO05D008632 2.5e-10 72.0 98 40.8
Gorai.010G128600 Gossypium raimondii HOM05D024651 ORTHO05D019476 1.2e-07 63.2 55 54.5
Gohir.D06G112750 Gossypium hirsutum HOM05D007101 ORTHO05D019476 2.0e-07 62.4 65 47.7


User provided reference genes

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