Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 3.0e-154 548.5 281 100.0
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 1.1e-55 221.1 266 53.0
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 3.5e-54 216.1 267 53.2
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 1.0e-53 214.5 283 49.5
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.3e-53 214.2 284 51.4
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 1.3e-53 214.2 280 50.4
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 1.3e-53 214.2 283 49.5
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 3.0e-53 213.0 283 49.1
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 6.6e-53 211.8 285 50.9
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 1.1e-52 211.1 284 51.1
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 1.9e-52 210.3 287 49.1
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 2.5e-52 209.9 290 50.0
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 2.5e-52 209.9 264 51.5
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 3.3e-52 209.5 289 50.5
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 3.3e-52 209.5 281 48.0
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 5.6e-52 208.8 282 49.3
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 5.6e-52 208.8 282 50.0
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.6e-51 207.2 281 49.8
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 3.6e-51 206.1 284 47.9
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 8.0e-51 204.9 284 49.3
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 8.0e-51 204.9 284 49.3
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 8.0e-51 204.9 284 49.3
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 8.0e-51 204.9 267 49.8
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 1.1e-50 204.5 287 49.1
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 5.2e-50 202.2 283 49.5
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 5.2e-50 202.2 287 48.8
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 1.2e-49 201.1 283 49.1
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 5.8e-49 198.7 294 48.0
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.7e-48 197.2 282 48.2
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 3.7e-48 196.1 283 49.8
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 4.9e-48 195.7 287 48.8
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.1e-47 194.5 284 46.8
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 4.1e-47 192.6 294 47.3
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 2.7e-46 189.9 287 44.6
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 2.7e-46 189.9 284 47.9
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 3.5e-46 189.5 272 43.4
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 6.0e-46 188.7 242 50.8
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 6.0e-46 188.7 294 46.3
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 1.7e-45 187.2 278 46.0
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.0e-45 186.4 260 48.8
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 6.6e-45 185.3 283 47.0
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 1.5e-44 184.1 266 46.6
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.5e-44 184.1 281 45.2
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 1.4e-42 177.6 269 46.5
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 2.3e-42 176.8 285 42.1
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 3.1e-42 176.4 267 46.8
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 7.5e-41 171.8 281 44.8
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.0e-37 161.4 281 44.1
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 1.0e-37 161.4 263 45.2
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 5.1e-37 159.1 281 43.8
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 3.3e-36 156.4 296 40.9
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 5.6e-36 155.6 226 48.2
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.6e-35 154.1 296 40.9
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 2.1e-35 153.7 273 41.0
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 4.7e-35 152.5 240 45.0
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 6.2e-35 152.1 266 41.7
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.4e-34 151.0 288 41.7
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.4e-34 151.0 287 42.9
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 4.0e-34 149.4 266 41.0
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 5.2e-34 149.1 273 40.3
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 6.8e-34 148.7 245 44.1
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 2.2e-32 143.7 291 37.8
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.2e-32 143.7 298 40.9
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 1.4e-31 141.0 271 38.7
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 7.1e-31 138.7 223 43.0
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 8.7e-29 131.7 247 39.7
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.5e-28 131.0 278 37.1
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 1.5e-28 131.0 294 35.7
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 4.3e-28 129.4 220 40.5
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 7.3e-28 128.6 285 34.4
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 4.7e-27 125.9 227 39.6
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.1e-26 124.8 285 35.1
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 3.1e-26 123.2 245 40.8
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 3.1e-26 123.2 212 40.1
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 3.1e-26 123.2 264 36.0
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 3.1e-26 123.2 289 35.3
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.2e-25 121.3 272 36.4
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 2.0e-25 120.6 301 34.9
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 4.4e-25 119.4 202 40.6
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 2.2e-24 117.1 243 40.3
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 3.8e-24 116.3 261 36.8
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 7.1e-23 112.1 126 54.8
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 7.1e-23 112.1 126 54.8
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 7.1e-23 112.1 126 54.8
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 7.1e-23 112.1 238 37.8
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 9.3e-23 111.7 268 33.6
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 9.3e-23 111.7 269 33.8
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 9.3e-23 111.7 267 36.3
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 9.3e-23 111.7 137 53.3
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 1.6e-22 110.9 265 36.6
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 6.0e-22 109.0 260 34.6
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 7.8e-22 108.6 128 53.9
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 1.3e-21 107.8 276 34.8
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 2.3e-21 107.1 264 34.8
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.3e-21 107.1 112 56.2
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 3.9e-21 106.3 287 33.8
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 8.7e-21 105.1 261 33.7
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 4.3e-20 102.8 257 33.1
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 4.3e-20 102.8 259 33.6
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 2.8e-19 100.1 270 33.3
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 6.2e-19 99.0 273 32.6
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 1.8e-18 97.4 276 34.1
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 1.8e-18 97.4 258 31.8
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 2.4e-18 97.1 258 31.8
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 3.1e-18 96.7 260 35.0
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 5.3e-18 95.9 285 31.9
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.5e-17 94.4 257 32.7
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 2.6e-17 93.6 115 52.2
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.7e-16 90.9 133 46.6
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 2.9e-16 90.1 275 32.4
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 2.9e-16 90.1 71 66.2
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 4.9e-16 89.4 261 30.7
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 6.4e-16 89.0 71 66.2
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 1.4e-15 87.8 71 64.8
arahy.Tifrunner.gnm1.ann1.X4XIB4 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.4e-15 87.8 177 37.9
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 1.4e-15 87.8 213 37.6
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 2.4e-15 87.0 71 64.8
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 2.4e-15 87.0 264 29.9
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 3.2e-15 86.7 72 63.9
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 3.2e-15 86.7 139 40.3
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.2e-15 86.3 255 32.5
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 7.1e-15 85.5 259 32.0
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 9.3e-15 85.1 270 32.6
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 9.3e-15 85.1 248 33.5
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 9.3e-15 85.1 257 32.7
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 9.3e-15 85.1 259 32.8
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 1.6e-14 84.3 266 33.8
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 2.1e-14 84.0 72 61.1
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 4.6e-14 82.8 74 56.8
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 4.6e-14 82.8 278 33.5
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 7.9e-14 82.0 270 30.7
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 7.9e-14 82.0 70 65.7
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 7.9e-14 82.0 117 47.9
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.8e-13 80.9 222 34.2
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.8e-13 80.9 76 56.6
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 3.0e-13 80.1 253 30.8
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 6.7e-13 79.0 187 36.4
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 6.7e-13 79.0 174 37.9
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 1.1e-12 78.2 70 61.4
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.5e-12 77.8 230 32.6
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.5e-12 77.0 257 30.0
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 3.3e-12 76.6 76 57.9
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 4.3e-12 76.3 268 29.5
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 5.6e-12 75.9 241 29.9
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 7.4e-12 75.5 262 29.0
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 1.3e-11 74.7 184 34.2
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 1.6e-11 74.3 67 62.7
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 2.1e-11 73.9 67 62.7
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 4.8e-11 72.8 259 30.9
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.1e-10 71.6 65 58.5
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 2.4e-10 70.5 67 59.7
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 3.1e-10 70.1 261 29.1
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 5.3e-10 69.3 134 38.1
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 1.5e-09 67.8 68 55.9
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 1.5e-09 67.8 77 48.1
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 2.0e-09 67.4 69 53.6
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 2.6e-09 67.0 213 28.2
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 3.4e-09 66.6 78 51.3
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 7.6e-09 65.5 77 45.5
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.3e-08 64.7 77 50.6
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 1.3e-08 64.7 253 27.7
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.3e-08 64.7 71 46.5
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 2.2e-08 63.9 66 53.0
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 3.8e-08 63.2 55 60.0
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 8.4e-08 62.0 243 26.7
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 1.1e-07 61.6 72 52.8
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 1.9e-07 60.8 66 50.0
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.4e-07 60.5 234 28.6
SMO347G0358 Selaginella moellendorffii HOM05D003937 ORTHO05D004583 1.6e-06 57.8 135 34.8
SGA_v2.0_scaffold58G20314 Striga asiatica HOM05D003937 ORTHO05D004583 1.6e-06 57.8 177 29.4
CDE06G2177 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 3.5e-06 56.6 71 46.5
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 6.0e-06 55.8 233 27.9


User provided reference genes

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