Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 5.4e-170 600.9 304 100.0
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 1.1e-106 390.6 225 84.4
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 4.0e-104 382.1 225 82.2
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 8.9e-104 380.9 225 82.2
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 8.9e-104 380.9 228 82.0
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 2.0e-103 379.8 225 80.0
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 2.8e-102 375.9 227 80.6
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 3.2e-101 372.5 224 79.5
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 4.5e-100 368.6 225 79.1
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 5.9e-100 368.2 264 71.6
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 7.8e-100 367.9 227 80.6
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 1.0e-99 367.5 225 78.7
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 2.9e-99 365.9 227 80.2
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 5.0e-99 365.2 230 79.1
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.1e-98 364.0 230 78.7
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 2.5e-98 362.8 230 78.3
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 2.5e-98 362.8 227 79.3
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 2.5e-98 362.8 225 77.3
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 5.6e-98 361.7 225 77.8
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 7.3e-98 361.3 225 77.8
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 9.5e-98 360.9 219 79.5
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 1.6e-97 360.1 216 83.8
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 2.1e-97 359.8 241 74.3
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 1.4e-96 357.1 225 77.3
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 2.3e-96 356.3 225 78.2
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 4.0e-96 355.5 217 79.7
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 4.0e-96 355.5 225 77.8
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 5.2e-96 355.1 224 76.8
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 5.2e-96 355.1 221 77.8
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 5.2e-96 355.1 224 77.2
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 8.9e-96 354.4 224 76.3
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 1.2e-95 354.0 224 76.3
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 1.5e-95 353.6 250 71.6
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 2.0e-95 353.2 219 78.1
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 2.0e-95 353.2 224 76.3
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 3.4e-95 352.4 225 75.1
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 3.4e-95 352.4 225 76.0
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 4.4e-95 352.1 234 74.8
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 4.4e-95 352.1 225 77.3
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 7.5e-95 351.3 219 77.6
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 7.5e-95 351.3 224 77.2
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 9.8e-95 350.9 224 76.3
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 9.8e-95 350.9 225 74.7
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 9.8e-95 350.9 225 76.0
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 9.8e-95 350.9 225 75.1
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 1.3e-94 350.5 224 75.9
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 1.3e-94 350.5 219 78.1
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.7e-94 350.1 225 76.9
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 2.9e-94 349.4 223 77.6
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 3.7e-94 349.0 225 75.1
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 3.7e-94 349.0 219 76.3
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 3.7e-94 349.0 217 77.4
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 3.7e-94 349.0 222 76.6
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 3.7e-94 349.0 225 74.7
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 4.9e-94 348.6 225 76.9
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 6.4e-94 348.2 225 74.2
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 6.4e-94 348.2 217 77.0
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 6.4e-94 348.2 220 75.0
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 8.3e-94 347.8 224 75.9
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 1.1e-93 347.4 219 75.8
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 1.1e-93 347.4 225 74.7
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 1.1e-93 347.4 222 75.2
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 1.4e-93 347.1 228 75.4
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 1.4e-93 347.1 225 75.1
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 1.4e-93 347.1 225 75.6
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.9e-93 346.7 223 76.7
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 3.2e-93 345.9 218 75.7
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 5.4e-93 345.1 217 77.0
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 9.2e-93 344.4 225 73.8
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 9.2e-93 344.4 224 73.2
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 9.2e-93 344.4 225 74.2
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 1.2e-92 344.0 225 72.0
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.2e-92 344.0 225 76.4
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 2.0e-92 343.2 222 74.8
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 2.0e-92 343.2 220 75.9
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 2.7e-92 342.8 224 72.8
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 2.7e-92 342.8 225 74.2
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 3.5e-92 342.4 228 74.1
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 3.5e-92 342.4 224 72.8
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 3.5e-92 342.4 225 74.7
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 4.6e-92 342.0 219 75.3
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 6.0e-92 341.7 219 75.3
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 6.0e-92 341.7 225 74.7
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 7.8e-92 341.3 222 73.9
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 1.7e-91 340.1 228 73.7
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 2.3e-91 339.7 219 74.9
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 2.3e-91 339.7 228 73.2
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 5.0e-91 338.6 217 77.4
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 6.6e-91 338.2 239 72.0
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 6.6e-91 338.2 228 74.1
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 1.1e-90 337.4 216 75.5
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 3.3e-90 335.9 225 73.8
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 9.5e-90 334.3 214 75.7
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 9.5e-90 334.3 214 75.7
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 3.6e-89 332.4 224 73.2
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.6e-89 332.4 233 72.5
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 6.2e-89 331.6 222 73.4
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.4e-88 330.5 276 64.9
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 1.8e-88 330.1 225 71.1
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 6.8e-88 328.2 300 59.7
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 1.5e-87 327.0 233 70.4
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 5.8e-87 325.1 215 72.6
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 5.8e-87 325.1 225 69.8
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 1.7e-86 323.6 205 75.1
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 2.2e-86 323.2 208 75.0
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 2.2e-86 323.2 202 75.2
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 2.9e-86 322.8 228 71.1
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 3.7e-86 322.4 227 70.9
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 3.7e-86 322.4 219 68.9
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 8.3e-86 321.2 225 72.0
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 1.9e-85 320.1 201 76.6
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 1.9e-85 320.1 202 77.2
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 5.4e-85 318.5 225 70.2
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 7.1e-85 318.2 208 72.1
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 2.7e-84 316.2 208 74.0
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 2.7e-84 316.2 208 74.0
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 3.5e-84 315.8 200 76.5
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 3.5e-84 315.8 210 70.5
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 1.0e-83 314.3 211 73.0
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 6.6e-83 311.6 200 74.5
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 3.3e-82 309.3 201 74.6
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 5.6e-82 308.5 203 72.9
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 9.5e-82 307.8 240 65.4
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.8e-80 303.5 203 72.9
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 6.8e-80 301.6 212 67.9
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 4.4e-79 298.9 215 66.0
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 4.9e-78 295.4 198 74.2
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 9.2e-77 291.2 202 68.3
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 3.9e-75 285.8 214 65.0
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 1.9e-74 283.5 197 70.1
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 2.5e-74 283.1 215 68.8
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 5.6e-74 282.0 225 65.3
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 5.6e-74 282.0 186 73.7
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 5.6e-74 282.0 216 66.7
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 1.4e-72 277.3 227 62.1
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 7.1e-69 265.0 225 61.8
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 1.6e-68 263.8 173 74.6
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 7.8e-68 261.5 214 63.6
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 4.8e-65 252.3 159 78.6
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 4.8e-65 252.3 231 58.9
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 4.0e-64 249.2 207 62.3
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 9.0e-64 248.1 204 64.7
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 9.0e-64 248.1 212 59.0
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 6.4e-62 241.9 232 58.2
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 1.9e-61 240.4 149 81.2
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 7.1e-61 238.4 215 56.7
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 1.2e-60 237.7 157 75.2
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 1.6e-60 237.3 196 61.2
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 3.9e-59 232.6 222 54.1
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 7.3e-58 228.4 211 58.8
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 6.2e-57 225.3 223 53.4
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 2.0e-55 220.3 183 64.5
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 4.5e-55 219.2 186 62.9
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.8e-54 216.1 238 52.9
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 4.6e-52 209.1 214 51.9
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 5.1e-43 179.1 236 43.2
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 9.6e-42 174.9 117 75.2
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 1.5e-39 167.5 215 50.7
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.6e-39 166.8 224 44.2
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 9.3e-37 158.3 252 38.9
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 1.0e-35 154.8 215 42.3
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 1.8e-35 154.1 103 72.8
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 3.9e-35 152.9 109 67.9
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 1.6e-33 147.5 99 70.7
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 1.8e-32 144.1 119 66.4
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.6e-28 131.0 123 59.3
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 2.2e-25 120.6 166 40.4
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 2.2e-25 120.6 78 75.6
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 2.8e-25 120.2 81 72.8
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 6.5e-22 109.0 83 68.7
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 2.4e-16 90.5 201 29.9
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 7.0e-16 89.0 70 61.4
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 1.1e-10 71.6 105 41.9
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 4.1e-08 63.2 40 60.0
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 3.5e-07 60.1 77 51.9
CBR_g3510 Chara braunii HOM05D003994 ORTHO05D043992 4.5e-07 59.7 71 45.1


User provided reference genes

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