Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 3.0e-235 818.1 417 100.0
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 1.3e-150 537.0 416 66.1
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 9.8e-146 520.8 417 63.8
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 4.9e-145 518.5 425 63.8
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 6.0e-143 511.5 420 65.0
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 3.0e-142 509.2 417 64.0
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 3.3e-141 505.8 415 63.6
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 1.1e-139 500.7 413 62.2
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 4.0e-139 498.8 417 64.3
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 9.2e-136 487.6 416 61.8
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 3.0e-134 482.6 412 61.7
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 3.9e-134 482.3 416 62.0
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 1.5e-133 480.3 417 60.9
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 4.3e-133 478.8 418 60.8
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 2.8e-132 476.1 336 71.4
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 4.7e-132 475.3 336 71.4
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 2.3e-131 473.0 416 60.1
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 8.9e-131 471.1 395 62.8
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 7.6e-130 468.0 385 63.4
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 1.7e-129 466.8 415 60.2
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 6.4e-129 464.9 416 60.6
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 8.4e-129 464.5 413 59.8
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 1.1e-128 464.2 364 64.3
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 2.4e-128 463.0 420 58.8
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 3.2e-128 462.6 480 54.8
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.2e-128 462.6 416 58.9
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 9.2e-128 461.1 420 58.6
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 2.1e-127 459.9 416 60.3
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 3.5e-127 459.1 416 59.1
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 3.5e-127 459.1 417 58.5
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 6.6e-126 454.9 423 58.4
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 1.5e-125 453.8 396 59.8
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 2.5e-125 453.0 427 58.3
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 1.2e-124 450.7 447 54.8
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 3.6e-124 449.1 420 60.7
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 6.2e-124 448.4 413 58.6
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 1.1e-123 447.6 396 59.6
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 1.8e-123 446.8 416 59.1
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 3.1e-123 446.0 418 57.7
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 6.9e-123 444.9 381 59.6
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 8.9e-123 444.5 420 58.3
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 4.9e-121 438.7 421 58.2
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 1.1e-120 437.6 425 57.4
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 1.4e-120 437.2 432 53.9
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 5.4e-120 435.3 412 56.6
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.7e-119 433.0 413 56.9
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 1.0e-118 431.0 462 52.8
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 3.9e-118 429.1 413 55.2
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 8.7e-118 427.9 412 55.3
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 8.7e-118 427.9 418 57.2
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 4.3e-117 425.6 398 60.8
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 5.6e-117 425.2 341 64.8
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 5.3e-115 418.7 316 66.1
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 6.9e-115 418.3 416 55.3
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 1.2e-114 417.5 411 55.0
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 2.6e-114 416.4 416 57.0
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 4.5e-114 415.6 413 54.0
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 7.6e-114 414.8 366 57.9
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 1.3e-113 414.1 352 59.4
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 1.3e-113 414.1 422 54.7
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 1.7e-113 413.7 414 53.4
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 2.9e-113 412.9 411 54.0
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 4.2e-112 409.1 351 61.8
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 2.1e-111 406.8 411 54.0
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 2.7e-111 406.4 347 59.7
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 6.0e-111 405.2 414 52.2
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 1.8e-110 403.7 366 59.6
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 6.7e-110 401.7 425 52.0
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 1.5e-109 400.6 433 52.4
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 2.5e-109 399.8 364 59.3
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 2.1e-108 396.7 410 53.9
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 1.2e-106 391.0 437 51.5
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 2.6e-106 389.8 435 51.5
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 4.5e-106 389.0 418 52.9
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 1.7e-105 387.1 420 52.4
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 2.9e-105 386.3 420 52.1
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 6.4e-105 385.2 420 51.9
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 2.4e-104 383.3 420 51.7
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 3.2e-104 382.9 419 51.8
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 4.6e-103 379.0 396 54.8
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 5.1e-102 375.6 419 53.5
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 8.7e-102 374.8 337 59.9
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 5.6e-101 372.1 416 49.8
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 1.3e-100 370.9 414 53.1
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 4.5e-98 362.5 378 51.9
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 3.5e-95 352.8 421 50.4
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 1.0e-94 351.3 336 56.2
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 9.7e-93 344.7 415 49.6
HPP92_008341 Vanilla planifolia HOM05D006199 ORTHO05D006558 2.8e-92 343.2 424 49.3
Oeu050364.1 Olea europaea HOM05D006199 ORTHO05D006558 2.4e-91 340.1 253 68.0
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 7.6e-90 335.1 428 46.5
Cpa.g.sc37.143 Carica papaya HOM05D006199 ORTHO05D006558 1.0e-86 324.7 246 67.5
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 4.3e-85 319.3 418 46.2
Psat5g002720 Pisum sativum HOM05D006199 ORTHO05D006558 5.7e-85 318.9 419 46.1
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 9.7e-77 291.6 313 49.8
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 1.8e-75 287.3 336 49.4
CSS0017687 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 7.2e-72 275.4 191 72.3
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.6e-66 256.9 194 64.4
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 1.6e-58 231.1 166 66.3
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 2.5e-56 223.8 388 38.7
unitig_37.g12834 Utricularia gibba HOM05D006199 ORTHO05D006558 7.2e-56 222.2 323 43.7
Mapoly0068s0001 Marchantia polymorpha HOM05D006199 ORTHO05D006558 3.4e-53 213.4 337 38.9
AagrBONN_evm.TU.Sc2ySwM_362.2501 Anthoceros agrestis HOM05D006199 ORTHO05D006558 7.0e-51 205.7 387 35.7
FAN12G0591 Fragaria x ananassa HOM05D006199 ORTHO05D006558 9.5e-40 168.7 140 58.6
CSS0031508 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 1.8e-38 164.5 176 53.4
Actinidia20510 Actinidia chinensis HOM05D006199 ORTHO05D006558 5.2e-38 162.9 129 62.8
FAN06G5031 Fragaria x ananassa HOM05D006199 ORTHO05D006558 9.8e-37 158.7 123 61.0
FAN14G5753 Fragaria x ananassa HOM05D006199 ORTHO05D006558 6.4e-36 156.0 111 67.6
FvH4_1g02330 Fragaria vesca HOM05D006199 ORTHO05D006558 4.1e-35 153.3 111 65.8
AUR62027127 Chenopodium quinoa HOM05D006199 ORTHO05D006558 3.9e-33 146.7 199 46.7
FvH4_5g37420 Fragaria vesca HOM05D006199 ORTHO05D006558 5.0e-33 146.4 131 58.8
BcaB01g02961 Brassica carinata HOM05D006199 ORTHO05D006558 4.0e-30 136.7 255 38.0
FvH4_4g14930 Fragaria vesca HOM05D006199 ORTHO05D006558 1.9e-27 127.9 123 52.0
MCO03G518 Micromonas commoda HOM05D006199 ORTHO05D006558 9.2e-27 125.6 210 36.7
SGA_v2.0_scaffold58G20372 Striga asiatica HOM05D006199 ORTHO05D006558 9.2e-27 125.6 162 45.7
RcHm_v2.0_Chr5g0048301 Rosa chinensis HOM05D006199 ORTHO05D006558 3.1e-22 110.5 217 34.6
FAN06G2201 Fragaria x ananassa HOM05D006199 ORTHO05D006558 4.9e-20 103.2 140 45.7
FvH4_7g17270 Fragaria vesca HOM05D006199 ORTHO05D006558 8.3e-20 102.4 81 59.3
Cre07.g351400 Chlamydomonas reinhardtii HOM05D006199 ORTHO05D006558 1.4e-19 101.7 192 32.8
FAN24G0607 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.6e-18 98.2 77 57.1
FvH4_2g23470 Fragaria vesca HOM05D006199 ORTHO05D006558 1.7e-17 94.7 71 60.6
FAN14G4166 Fragaria x ananassa HOM05D006199 ORTHO05D006558 9.5e-16 89.0 63 63.5
CBR_g870 Chara braunii HOM05D006199 ORTHO05D006558 6.2e-15 86.3 263 26.6
HanXRQChr15g0479941 Helianthus annuus HOM05D006199 ORTHO05D006558 1.3e-12 78.6 78 50.0
CDE02G3657 Ceratophyllum demersum HOM05D006199 ORTHO05D006558 2.4e-11 74.3 97 47.4
Duzib248G0391 Durio zibethinus HOM05D006199 ORTHO05D006558 2.1e-07 61.2 52 57.7
FvH4_4g05800 Fragaria vesca HOM05D006199 ORTHO05D006558 4.7e-07 60.1 54 48.1


User provided reference genes

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